메뉴 건너뛰기




Volumn 273, Issue 5, 1997, Pages 1020-1031

Affinities and selectivities of bivalent cation binding sites within an RNA tertiary structure

Author keywords

Binding polynomial; Ribosomal protein L11; Ribosomal RNA; RNA folding; Thermal denaturation

Indexed keywords

AMMONIA; BACTERIAL PROTEIN; BACTERIAL RNA; BARIUM ION; CALCIUM ION; MAGNESIUM ION; MANGANESE; POTASSIUM ION; RIBOSOME RNA; SODIUM ION; STRONTIUM; BARIUM; CALCIUM; MAGNESIUM; RIBOSOMAL PROTEIN L11; RIBOSOME PROTEIN; RNA 23S;

EID: 0031567680     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.1383     Document Type: Article
Times cited : (82)

References (49)
  • 3
    • 0022433369 scopus 로고
    • Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA
    • Brown, R. S., Dewan, J. C. & Klug, A. (1985). Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA. Biochemistry, 24, 4785-4801.
    • (1985) Biochemistry , vol.24 , pp. 4785-4801
    • Brown, R.S.1    Dewan, J.C.2    Klug, A.3
  • 4
    • 0030587890 scopus 로고    scopus 로고
    • Metal-binding sites in the major groove of a large ribozyme domain
    • Cate, J. H. & Doudna, J. A. (1996). Metal-binding sites in the major groove of a large ribozyme domain. Structure, 4, 1221-1229.
    • (1996) Structure , vol.4 , pp. 1221-1229
    • Cate, J.H.1    Doudna, J.A.2
  • 6
    • 0015272578 scopus 로고
    • tRNA structure and binding sites for cations
    • Danchin, A. (1972). tRNA structure and binding sites for cations. Biopolymers, 11, 1317-1333.
    • (1972) Biopolymers , vol.11 , pp. 1317-1333
    • Danchin, A.1
  • 7
    • 0026601458 scopus 로고
    • Site-directed mutagenesis of virtually any plasmid by eliminating a unique site
    • Deng, W. P. & Nickoloff, J. A. (1992). Site-directed mutagenesis of virtually any plasmid by eliminating a unique site. Anal. Biochem. 200, 81-88.
    • (1992) Anal. Biochem. , vol.200 , pp. 81-88
    • Deng, W.P.1    Nickoloff, J.A.2
  • 9
    • 0029044463 scopus 로고
    • Thermodynamics of RNA unfolding: Stabilization of a ribosomal RNA tertiary structure by thiostrepton and ammonium ion
    • Draper, D. E., Xing, Y. & Laing, L. (1995). Thermodynamics of RNA unfolding: stabilization of a ribosomal RNA tertiary structure by thiostrepton and ammonium ion. J. Mol. Biol. 249, 231-238.
    • (1995) J. Mol. Biol. , vol.249 , pp. 231-238
    • Draper, D.E.1    Xing, Y.2    Laing, L.3
  • 11
    • 0014422451 scopus 로고
    • Interaction of metal ions with polynucleotides and related compounds. XII. The relative effects of various metal ions on DNA helicity
    • Eichorn, G. L. & Shin, Y. A. (1968). Interaction of metal ions with polynucleotides and related compounds. XII. The relative effects of various metal ions on DNA helicity. J. Am. Chem. Soc. 90, 7323-7325.
    • (1968) J. Am. Chem. Soc. , vol.90 , pp. 7323-7325
    • Eichorn, G.L.1    Shin, Y.A.2
  • 12
    • 73049154846 scopus 로고
    • Cation selective glass electrodes and their mode of operation
    • Eisenman, G. (1962). Cation selective glass electrodes and their mode of operation. Biophys. J. 2, 259-323.
    • (1962) Biophys. J. , vol.2 , pp. 259-323
    • Eisenman, G.1
  • 13
    • 0021070747 scopus 로고
    • Ionic selectivity revisited: The role of kinetic and equilibrium processes in ion permeation through channels
    • Eisenman, G. & Horn, R. (1983). Ionic selectivity revisited: the role of kinetic and equilibrium processes in ion permeation through channels. J. Membr. Biol. 76, 197-225.
    • (1983) J. Membr. Biol. , vol.76 , pp. 197-225
    • Eisenman, G.1    Horn, R.2
  • 15
    • 0027932176 scopus 로고
    • Thermodynamics of folding a pseudoknotted mRNA fragment
    • Gluick, T. C. & Draper, D. E. (1994). Thermodynamics of folding a pseudoknotted mRNA fragment. J. Mol. Biol. 241, 246-262.
    • (1994) J. Mol. Biol. , vol.241 , pp. 246-262
    • Gluick, T.C.1    Draper, D.E.2
  • 16
    • 0026539417 scopus 로고
    • A compilation of large subunit (23 S and 23 S-like) ribosomal RNA structures
    • Gutell, R. R., Schnare, M. N. & Gray, M. W. (1992). A compilation of large subunit (23 S and 23 S-like) ribosomal RNA structures. Nucl. Acids Res. 20(Suppl.), 2095-2109.
    • (1992) Nucl. Acids Res. , vol.20 , Issue.SUPPL. , pp. 2095-2109
    • Gutell, R.R.1    Schnare, M.N.2    Gray, M.W.3
  • 17
    • 0021930512 scopus 로고
    • Interactions of some naturally occurring cat-ions with phenylalanine and initiator tRNA from yeast as reflected by their thermal stability
    • Heerschap, A., Walters, J. A. L. I. & Hilbers, C. W. (1985). Interactions of some naturally occurring cat-ions with phenylalanine and initiator tRNA from yeast as reflected by their thermal stability. Biophys. Chem. 22, 205-217.
    • (1985) Biophys. Chem. , vol.22 , pp. 205-217
    • Heerschap, A.1    Walters, J.A.L.I.2    Hilbers, C.W.3
  • 19
    • 0029998660 scopus 로고    scopus 로고
    • Structure of a hexanucleotide RNA hairpin loop conserved in ribosomal RNAs
    • Huang, S., Wang, Y. X. & Draper, D. E. (1996). Structure of a hexanucleotide RNA hairpin loop conserved in ribosomal RNAs. J. Mol. Biol. 258, 308-321.
    • (1996) J. Mol. Biol. , vol.258 , pp. 308-321
    • Huang, S.1    Wang, Y.X.2    Draper, D.E.3
  • 21
    • 0017361887 scopus 로고
    • A crystallographic study of metal-binding to yeast phenylalanine transfer RNA
    • Jack, A., Ladner, J. E., Rhodes, D., Brown, R. S. & Klug, A. (1977). A crystallographic study of metal-binding to yeast phenylalanine transfer RNA. J. Mol. Biol. 111, 315-328.
    • (1977) J. Mol. Biol. , vol.111 , pp. 315-328
    • Jack, A.1    Ladner, J.E.2    Rhodes, D.3    Brown, R.S.4    Klug, A.5
  • 23
    • 0020475128 scopus 로고
    • Magnesium ion inner sphere complex in the anticodon loop of phenylalanine transfer ribonucleic acid
    • Labuda, D. & Pörschke, D. (1982). Magnesium ion inner sphere complex in the anticodon loop of phenylalanine transfer ribonucleic acid. Biochemistry, 21, 49-53.
    • (1982) Biochemistry , vol.21 , pp. 49-53
    • Labuda, D.1    Pörschke, D.2
  • 24
    • 0028234517 scopus 로고
    • Thermodynamics of RNA folding in a highly conserved ribosomal RNA domain
    • Laing, L. G. & Draper, D. E. (1994). Thermodynamics of RNA folding in a highly conserved ribosomal RNA domain. J. Mol. Biol. 237, 560-576.
    • (1994) J. Mol. Biol. , vol.237 , pp. 560-576
    • Laing, L.G.1    Draper, D.E.2
  • 26
    • 0028102703 scopus 로고
    • Bases defining an ammonium and magnesium ion-dependent tertiary structure within the large subunit ribosomal RNA
    • Lu, M. & Draper, D. E. (1994). Bases defining an ammonium and magnesium ion-dependent tertiary structure within the large subunit ribosomal RNA. J. Mol. Biol. 244, 572-585.
    • (1994) J. Mol. Biol. , vol.244 , pp. 572-585
    • Lu, M.1    Draper, D.E.2
  • 27
    • 0017411336 scopus 로고
    • Theory of the delocalized binding of Mg(II) to DNA: Preliminary analysis for low binding levels
    • Manning, G. S. (1977). Theory of the delocalized binding of Mg(II) to DNA: preliminary analysis for low binding levels. Biophys. Chem. 7, 141-145.
    • (1977) Biophys. Chem. , vol.7 , pp. 141-145
    • Manning, G.S.1
  • 29
    • 0027173193 scopus 로고
    • An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme
    • Murphy, F. L. & Cech, T. R. (1993). An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme. Biochemistry, 32, 5291-5300.
    • (1993) Biochemistry , vol.32 , pp. 5291-5300
    • Murphy, F.L.1    Cech, T.R.2
  • 30
    • 0028063567 scopus 로고
    • Three-dimensional structure of a hammerhead ribozyme
    • Pley, H. W., Flaherty, K. M. & McKay, D. B. (1994). Three-dimensional structure of a hammerhead ribozyme. Nature, 372, 68-74.
    • (1994) Nature , vol.372 , pp. 68-74
    • Pley, H.W.1    Flaherty, K.M.2    McKay, D.B.3
  • 31
    • 0017826433 scopus 로고
    • Thermodynamic analysis of transfer RNA unfolding
    • Privalov, P. L. & Filimonov, V. V. (1978). Thermodynamic analysis of transfer RNA unfolding. J. Mol. Biol. 122, 447-464.
    • (1978) J. Mol. Biol. , vol.122 , pp. 447-464
    • Privalov, P.L.1    Filimonov, V.V.2
  • 32
    • 0022555893 scopus 로고
    • Scanning microcalorimetry in studying temperature-induced changes in proteins
    • Privalov, P. L. & Potekhin, S. A. (1986). Scanning microcalorimetry in studying temperature-induced changes in proteins. Methods Enzymol. 131, 4-51.
    • (1986) Methods Enzymol. , vol.131 , pp. 4-51
    • Privalov, P.L.1    Potekhin, S.A.2
  • 33
    • 0027183545 scopus 로고
    • Ribozymes: A distinct class of metalloenzymes
    • Pyle, A. M. (1993). Ribozymes: a distinct class of metalloenzymes. Science, 261, 709-714.
    • (1993) Science , vol.261 , pp. 709-714
    • Pyle, A.M.1
  • 34
    • 0017146579 scopus 로고
    • Ion effects on ligand-nucleic acid interactions
    • Record, M. T., Lohman, T. M. & Haseth de, P. (1976). Ion effects on ligand-nucleic acid interactions. J. Mol. Biol. 107, 145-158.
    • (1976) J. Mol. Biol. , vol.107 , pp. 145-158
    • Record, M.T.1    Lohman, T.M.2    De Haseth, P.3
  • 35
    • 0017667044 scopus 로고
    • Interpretation of monovalent and divalent cation effects on the lac repressor-operator interaction
    • Record, M. T., deHaseth, P. L. & Lohman, T. M. (1977). Interpretation of monovalent and divalent cation effects on the lac repressor-operator interaction. Biochemistry, 16, 4791-4796.
    • (1977) Biochemistry , vol.16 , pp. 4791-4796
    • Record, M.T.1    DeHaseth, P.L.2    Lohman, T.M.3
  • 36
    • 0016732394 scopus 로고
    • tRNA conformation and magnesium binding
    • Römer, R. & Hach, R. (1975). tRNA conformation and magnesium binding. Eur. J. Biochem. 55, 271-284.
    • (1975) Eur. J. Biochem. , vol.55 , pp. 271-284
    • Römer, R.1    Hach, R.2
  • 37
    • 0025999688 scopus 로고
    • Recognition of the highly conserved GTPase center of 23 S ribosomal RNA by ribosomal protein L11 and the antibiotic thiostrepton
    • Ryan, P. C., Lu, M. & Draper, D. E. (1991). Recognition of the highly conserved GTPase center of 23 S ribosomal RNA by ribosomal protein L11 and the antibiotic thiostrepton. J. Mol. Biol. 221, 1257-1268.
    • (1991) J. Mol. Biol. , vol.221 , pp. 1257-1268
    • Ryan, P.C.1    Lu, M.2    Draper, D.E.3
  • 39
    • 0016699207 scopus 로고
    • Macromolecular binding
    • Schellman, J. A. (1975). Macromolecular binding. Biopolymers, 14, 999-1018.
    • (1975) Biopolymers , vol.14 , pp. 999-1018
    • Schellman, J.A.1
  • 40
    • 0029073091 scopus 로고
    • The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
    • Scott, W. G., Finch, J. T. & Klug, A. (1995). The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage. Cell, 81, 991-1002.
    • (1995) Cell , vol.81 , pp. 991-1002
    • Scott, W.G.1    Finch, J.T.2    Klug, A.3
  • 41
    • 0030476765 scopus 로고    scopus 로고
    • Capturing the structure of a catalytic RNA intermediate: The hammerhead ribozyme
    • Scott, W. G., Murray, J. B., Arnold, J. R. P., Stoddard, B. L. & Klug, A. (1996). Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme. Science, 274, 2065-2069.
    • (1996) Science , vol.274 , pp. 2065-2069
    • Scott, W.G.1    Murray, J.B.2    Arnold, J.R.P.3    Stoddard, B.L.4    Klug, A.5
  • 42
    • 0017295709 scopus 로고
    • Conformational changes of transfer RNA. The role of magnesium(II)
    • Stein, A. & Crothers, D. M. (1976a). Conformational changes of transfer RNA. The role of magnesium(II). Biochemistry, 15, 160-167.
    • (1976) Biochemistry , vol.15 , pp. 160-167
    • Stein, A.1    Crothers, D.M.2
  • 44
    • 0000030704 scopus 로고
    • Electrostatics and biological systems
    • Tam, S.-C. & Williams, R. J. P. (1985). Electrostatics and biological systems. Struct. Bonding, 65, 103-151.
    • (1985) Struct. Bonding , vol.65 , pp. 103-151
    • Tam, S.-C.1    Williams, R.J.P.2
  • 45
    • 0029258928 scopus 로고
    • Keeping RNA happy
    • Uhlenbeck, O. C. (1995). Keeping RNA happy. RNA, 1, 4-6.
    • (1995) RNA , vol.1 , pp. 4-6
    • Uhlenbeck, O.C.1
  • 48
    • 0029063715 scopus 로고
    • Stabilization of a riboso-mal RNA tertiary structure by ribosomal protein L11
    • Xing, Y. & Draper, D. E. (1995). Stabilization of a riboso-mal RNA tertiary structure by ribosomal protein L11. J. Mol. Biol 249, 319-331.
    • (1995) J. Mol. Biol , vol.249 , pp. 319-331
    • Xing, Y.1    Draper, D.E.2
  • 49
    • 0030020855 scopus 로고    scopus 로고
    • Cooperative interactions of RNA and thiostrepton antibiotic with two domains of ribosomal protein L11
    • Xing, Y. & Draper, D. E. (1996). Cooperative interactions of RNA and thiostrepton antibiotic with two domains of ribosomal protein L11. Biochemistry, 35, 1581-1588.
    • (1996) Biochemistry , vol.35 , pp. 1581-1588
    • Xing, Y.1    Draper, D.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.