A functional ribosomal RNA tertiary structure involves a base triple interaction

Biochemistry

Volumn 37, Issue 34, 1998, Pages 11980-11988

  Conn, Graeme L ^a   Gutell, Robin R ^b   Draper, David E ^a  

^a JOHNS HOPKINS UNIVERSITY   (United States)

^b UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA;

ARTICLE; BASE PAIRING; MOLECULAR INTERACTION; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN FOLDING; RIBOSOME; RNA CONFORMATION; RNA SEQUENCE;

BACILLUS STEAROTHERMOPHILUS; BASE COMPOSITION; BASE SEQUENCE; MODELS, CHEMICAL; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; NUCLEIC ACID CONFORMATION; PHYLOGENY; RIBOSOMAL PROTEINS; RNA, BACTERIAL; RNA, RIBOSOMAL, 23S; SEQUENCE ALIGNMENT; THIOSTREPTON; ULTRAVIOLET RAYS;

EID: 0032566329     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi980825+     Document Type: Article

References (45)

1. Quigly, G. J., and Rich, A. (1976) Science 194, 796-806.
2. Sussman, J. L., and Kim, S.-H. (1976) Science 176, 853-858.
3. Green, R., and Szostak, J. W. (1994) J. Mol. Biol. 235, 140-155.
4. Jaeger, L., Michel, F., and Westhof, E. (1994) J. Mol. Biol. 236, 1271-1276.
5. Murphy, F. L., and Cech, T. R. (1994) J. Mol. Biol. 236, 49-63.
6. Tanner, M. A., and Cech, T. R. (1997) Science 275, 847-849.
7. Brown, J. W., Nolan, J. M., Haas, E. S., Rubio, M. A. T., Major, F., and Pace, N. R. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 3001-3006.
8. Gutell, R. R. (1996) in Ribosomal RNA, Structure, Evolution, Processing and Function in Protein Biosynthesis (Zimmerman, R. A., and Dahlberg, A. E., Eds.) pp 111-128, CRC Press, Boca Raton, FL.
9. Kalurachchi, K., Uma, K., Zimmermann, R. A., and Nikonowicz, E. P. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 2139-2144.
10. Tao, J., Chen, L., and Frankel, A. D. (1997) Biochemistry 36, 3491-3495.
11. Gautheret, D., Damberger, S. H., and Gutell, R. R. (1995) J. Mol. Biol. 248, 27-43.
12. Noller, H. F., Kop, J., Wheaton, V., Brosius, J., Gutell, R. R., Kopylov, A. M., Dohme, F., Herr, W., Stahl, D. A., Gupta, R., and Woese, C. R. (1981) Nucleic Acids Res. 9, 6167-6189.
13. Gutell, R. R., Gray, M. W., and Schnare, M. N. (1993) Nucleic Acids Res. 21, 3055-3074 [Database issue].
14. Stark, M. R. J., Cundliffe, E., Dijk, J., and Stöffler, G. (1980) Mol. Gen. Genet. 180, 11-15.
15. Xing, Y., and Draper, D. E. (1995) J. Mol. Biol. 249, 319-331.
16. Egebjerg, J., Douthwaite, S. R., and Garrett, R. A. (1989) EMBO J. 8, 607-611.
17. Lu, M., and Draper, D. E. (1995) Nucleic Acids Res. 23, 3426-3433.
18. Rosendahl, G., and Douthwaite, S. (1994) Nucleic Acids Res. 22, 357-363.
19. Wang, Y. X., Lu, M., and Draper, D. E. (1993) Biochemistry 32, 12279-12282.
20. Laing, L. G., Gluick, T. C., and Draper, D. E. (1994) J. Mol. Biol. 237, 577-587.
21. Laing, L. G., and Draper, D. E. (1994) J. Mol. Biol. 237, 560-576.
22. Deng, W. P., and Nickoloff, J. A. (1992) Anal. Biochem. 200, 81-88.
23. Gurevich, V. V. (1996) Methods Enzymol. 275, 382-397.
24. Xing, Y., and Draper, D. E. (1996) Biochemistry 35, 1581-1588.
25. Ryan, P. C., and Draper, D. E. (1989) Biochemistry 28, 9949-9956.
26. Lu, M., and Draper, D. E. (1994) J. Mol. Biol. 244, 572-585.
27. Bukhman, Y. V., and Draper, D. E. (1997) J. Mol. Biol. 273, 1020-1031.
28. Saenger, W. (1984) Principles of Nucleic Acid Structure, pp 107-110, Springer-Verlag, New York.
29. Yang, A.-S., and Honig, B. (1994) J. Mol. Biol. 237, 602-614.
30. Oliveberg, M., and Fersht, A. R. (1996) Biochemistry 35, 6795-6805.
31. Gutell, R. R. (1993) Curr. Opin. Struct. Biol. 3, 313-322.
32. Michel, F., and Westhof, E. (1990) J. Mol. Biol. 216, 585-610.
33. Thompson, J., Schmidt, F., and Cundliffe, E. (1982) J. Biol. Chem. 257, 7915-7917.
34. Xing, Y., GuhaThakurta, D., and Draper, D. E. (1997) Nat. Struct. Biol. 4, 24-27.
35. Hinck, A. P., Markus, M. A., and Torchia, D. A. (1997) J. Mol. Biol. 274, 101-113.
36. Rosendahl, G., and Douthwaite, S. (1993) J. Mol. Biol. 234, 1013-1020.
37. Egebjerg, J., Douthwaite, S. R., Liljas, A., and Garrett, R. A. (1990) J. Mol. Biol. 213, 275-288.
38. Klinck, R., Liquier, J., Taillandier, E., Gouyette, C., Huynh-Dinh, T., and Guittet, E. (1995) Eur. J. Biochem. 233, 544-553.
39. Holland, J. A., and Hoffman, D. W. (1996) Nucleic Acids Res. 24, 2841-2848.
40. Auffinger, P., Louise-May, S., and Westhof, E. (1996) J. Am. Chem. Soc. 118, 1181-1189.
41. Lynch, S. R., and Tinoco, I., Jr. (1998) Nucleic Acids Res. 26, 980-987.
42. Puglisi, E. V., Green, R., Noller, H. F., and Puglisi, J. D. (1997) Nat. Struct. Biol. 4, 775-778.
43. Huang, S., Wang, X.-Y., and Draper, D. E. (1996) J. Mol. Biol. 258, 308-321.
44. Stallings, S. C., and Moore, P. B. (1997) Structure 5, 1173-1185.
45. Serra, M. J., Axenson, T. J., and Turner, D. H. (1994) Biochemistry 33, 14289-144296.