메뉴 건너뛰기




Volumn 94, Issue 6, 2002, Pages 552-556

In situ identification of microorganisms in biofilm communities

Author keywords

Biofilm community; Microbial ecology; Nitrifying bacteria; Spatial organization

Indexed keywords

BIOFILMS; METABOLISM; WASTEWATER TREATMENT;

EID: 0036968736     PISSN: 13891723     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1389-1723(02)80194-3     Document Type: Review
Times cited : (29)

References (28)
  • 1
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann, R. I., Krumholz, L., and Stahl, D. A.: Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol., 172, 762-770 (1990).
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 2
    • 0033952180 scopus 로고    scopus 로고
    • Environmentally relevant microorganisms
    • Watanabe, K. and Baker, P.W.: Environmentally relevant microorganisms. J. Biosci. Bioeng., 89, 1-11 (2000).
    • (2000) J. Biosci. Bioeng. , vol.89 , pp. 1-11
    • Watanabe, K.1    Baker, P.W.2
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation identification
    • Amann, R. I., Ludwig, W., and Schleifer, K-H.: Phylogenetic identification and in situ detection of individual microbial cells without cultivation identification. Microbiol. Rev., 59, 143-169 (1995).
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 4
    • 0032986790 scopus 로고    scopus 로고
    • Combination of fluorescent in situ hybridization and microautoradiography - A new tool for structure-function analyses in microbial ecology
    • Lee, N., Nielsen, P. H., Andreasen, K. H., Juretschko, S., Nielsen, J. L., Shleifer, K-H., and Wagner, M.: Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology. Appl. Environ. Microbiol., 65, 1289-1297 (1999).
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1289-1297
    • Lee, N.1    Nielsen, P.H.2    Andreasen, K.H.3    Juretschko, S.4    Nielsen, J.L.5    Shleifer, K.-H.6    Wagner, M.7
  • 5
    • 0036136673 scopus 로고    scopus 로고
    • Phylogenetic identification and substrate uptake patterns of sulfate reducing bacteria inhabiting an oxicanoxic sewer biofilm determined by combining microautoradiography and fluorescent in situ hybridization
    • Ito, T., Nielsen, J. L., Okabe, S., Watanabe, Y., and Nielsen, P. H.: Phylogenetic identification and substrate uptake patterns of sulfate reducing bacteria inhabiting an oxicanoxic sewer biofilm determined by combining microautoradiography and fluorescent in situ hybridization. Appl. Environ. Microbiol., 68, 356-364 (2002).
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 356-364
    • Ito, T.1    Nielsen, J.L.2    Okabe, S.3    Watanabe, Y.4    Nielsen, P.H.5
  • 6
    • 0035512205 scopus 로고    scopus 로고
    • In situ characterization of Nitrospira-like nitrite oxidizing bacteria active in wastewater treatment plants
    • Daims, H., Nielsen, J. L., Nielsen, P. H., Schleifer, K-H., and Wagner, M.: In situ characterization of Nitrospira-like nitrite oxidizing bacteria active in wastewater treatment plants. Appl. Environ. Microbiol., 67, 5273-5284 (2001).
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5273-5284
    • Daims, H.1    Nielsen, J.L.2    Nielsen, P.H.3    Schleifer, K.-H.4    Wagner, M.5
  • 7
    • 0027375701 scopus 로고
    • 2S in photosynthetic biofilms determined by oligonucleotide probes and microelectrodes
    • 2S in photosynthetic biofilms determined by oligonucleotide probes and microelectrodes. Appl. Environ. Microbiol., 59, 3840-3849 (1993).
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 3840-3849
    • Ramsing, N.B.1    Kuhl, M.2    Jorgensen, B.B.3
  • 8
    • 0029659250 scopus 로고    scopus 로고
    • Structure and function of a nitrifying biofilm as determined by in situ hybridization and use of microelectrodes
    • Schramm, A., Larsen, L. H., Revsbech, N. P., Ramsing, N. B., Amann, R., and Schleifer, K. H.: Structure and function of a nitrifying biofilm as determined by in situ hybridization and use of microelectrodes. Appl. Environ. Microbiol., 62, 4641-4647 (1996).
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4641-4647
    • Schramm, A.1    Larsen, L.H.2    Revsbech, N.P.3    Ramsing, N.B.4    Amann, R.5    Schleifer, K.H.6
  • 9
    • 0031684927 scopus 로고    scopus 로고
    • Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor
    • Schramm, A., de Beer, D., Wagner, M., and Amann, R.: Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor. Appl. Environ. Microbiol., 64, 3480-3485 (1998).
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3480-3485
    • Schramm, A.1    De Beer, D.2    Wagner, M.3    Amann, R.4
  • 10
    • 0032812283 scopus 로고    scopus 로고
    • Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor: Quantification by in situ hybridization and the use of microsensors
    • Schramm, A., de Beer, D., Wagner, M., Heuvel, J., Ottengraf, S., and Amann, R.: Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use of microsensors. Appl. Environ. Microbiol., 65, 3690-3696 (1999).
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3690-3696
    • Schramm, A.1    De Beer, D.2    Wagner, M.3    Heuvel, J.4    Ottengraf, S.5    Amann, R.6
  • 11
    • 0032976059 scopus 로고    scopus 로고
    • In situ analysis of nitrifying biofilms as determined by in situ hybridization and the use of microelectrodes
    • Okabe, S., Satoh, H., and Watanabe, Y.: In situ analysis of nitrifying biofilms as determined by in situ hybridization and the use of microelectrodes. Appl. Environ. Microbiol., 65, 3182-3191 (1999).
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3182-3191
    • Okabe, S.1    Satoh, H.2    Watanabe, Y.3
  • 12
    • 0027338866 scopus 로고
    • Survival of nonculturable Aermonas salmonecidac in lake water
    • Morgan, J. A. W., Rhodes, G., and Pickup, R. W.: Survival of nonculturable Aermonas salmonecidac in lake water. Appl. Environ. Microbiol., 59, 874-880 (1993).
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 874-880
    • Morgan, J.A.W.1    Rhodes, G.2    Pickup, R.W.3
  • 13
    • 0027506596 scopus 로고
    • Reliability of calcein acetoxy methyl ester and ethidium homodimer or propidium iodide for viability assessment of microbes
    • Kaneshiro, E. S., Wyder, M. A., Wu, Y. P., and Cushion, M.T.: Reliability of calcein acetoxy methyl ester and ethidium homodimer or propidium iodide for viability assessment of microbes. J. Microbiol. Methods, 17, 1-16 (1993).
    • (1993) J. Microbiol. Methods , vol.17 , pp. 1-16
    • Kaneshiro, E.S.1    Wyder, M.A.2    Wu, Y.P.3    Cushion, M.T.4
  • 14
    • 0029161178 scopus 로고
    • A new fluorescence staining assay for visualizing living microorganisms in soil
    • Tsuji, T., Kawasaki, Y., Takeshima, S., Sekiya, T., and Tanaka, S.: A new fluorescence staining assay for visualizing living microorganisms in soil. Appl. Environ. Microbiol., 61, 3415-3421 (1995).
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3415-3421
    • Tsuji, T.1    Kawasaki, Y.2    Takeshima, S.3    Sekiya, T.4    Tanaka, S.5
  • 15
    • 0026642952 scopus 로고
    • Use of a fluorescent redox probe for direct visualization of actively respiring bacteria
    • Rodregez, G. G., Phipps, D., Ishiguro, K., and Ridgeway, H.F.: Use of a fluorescent redox probe for direct visualization of actively respiring bacteria. Appl. Environ. Microbiol., 58, 1801-1808 (1992).
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 1801-1808
    • Rodregez, G.G.1    Phipps, D.2    Ishiguro, K.3    Ridgeway, H.F.4
  • 16
    • 0018423107 scopus 로고
    • A tentative direct microscopic method for counting living marine bacteria
    • Kogure, K., Simidu, U., and Taga, N.: A tentative direct microscopic method for counting living marine bacteria. Can. J. Microbiol., 25, 415-420 (1979).
    • (1979) Can. J. Microbiol. , vol.25 , pp. 415-420
    • Kogure, K.1    Simidu, U.2    Taga, N.3
  • 17
    • 0028862922 scopus 로고
    • In situ PCR for visualization of microscale distribution of specific gene and gene products in prokaryotic communities
    • Hodson, R. E., Dustman, W. A., Garg, R. P., and Moran, M. A.: In situ PCR for visualization of microscale distribution of specific gene and gene products in prokaryotic communities. Appl. Environ. Microbiol., 61, 4074-4082 (1995).
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 4074-4082
    • Hodson, R.E.1    Dustman, W.A.2    Garg, R.P.3    Moran, M.A.4
  • 18
    • 0346853568 scopus 로고
    • Development of a direct in situ PCR method for detection of specific bacteria in natural environments
    • Tani, K., Kurokawa, K., and Nasu, M.: Development of a direct in situ PCR method for detection of specific bacteria in natural environments. Appl. Environ. Microbiol., 61, 4074-4082 (1995).
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 4074-4082
    • Tani, K.1    Kurokawa, K.2    Nasu, M.3
  • 19
    • 0035514155 scopus 로고    scopus 로고
    • Direct detection by in situ PCR of the amoA gene in biofilm resulting from a nitrogen removal process
    • Hoshino, T., Noda, N., Tsuneda, S., Hirata, A., and Inamori, Y.: Direct detection by in situ PCR of the amoA gene in biofilm resulting from a nitrogen removal process. Appl. Environ. Microbiol., 67, 5261-5266 (2001).
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5261-5266
    • Hoshino, T.1    Noda, N.2    Tsuneda, S.3    Hirata, A.4    Inamori, Y.5
  • 20
    • 23444431611 scopus 로고
    • Green fluorescent protein as a marker for gene expression
    • Chalfie, M., Tu, Y., Euskirchen, G., Ward, W. W., and Prasher, D.C.: Green fluorescent protein as a marker for gene expression. Science, 263, 802-805 (1994).
    • (1994) Science , vol.263 , pp. 802-805
    • Chalfie, M.1    Tu, Y.2    Euskirchen, G.3    Ward, W.W.4    Prasher, D.C.5
  • 21
    • 0030688049 scopus 로고    scopus 로고
    • Visualization of specific gene expression in individual Salmonella typhimurium cells by in situ PCR
    • Tolker-Nielsen, T., Holmstrøm, K., and Molin, S.: Visualization of specific gene expression in individual Salmonella typhimurium cells by in situ PCR. Appl. Environ. Microbiol., 63, 4196-4203 (1997).
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4196-4203
    • Tolker-Nielsen, T.1    Holmstrøm, K.2    Molin, S.3
  • 22
    • 0034019423 scopus 로고    scopus 로고
    • In situ reverse transcription-PCR for monitoring gene expression in individual Methanosarcina mazei S-6 cells
    • Lange, M., Tolker-Nielsen, T., Molin, S., and Ahring, B. K.: In situ reverse transcription-PCR for monitoring gene expression in individual Methanosarcina mazei S-6 cells. Appl. Environ. Microbiol., 66, 1796-1800 (2000).
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1796-1800
    • Lange, M.1    Tolker-Nielsen, T.2    Molin, S.3    Ahring, B.K.4
  • 23
    • 0342813011 scopus 로고    scopus 로고
    • In situ reverse transcription an approach to characterize genetic diversity and activities of prokaryotes
    • Chen, E, Gonzalez, J. M., Dustman, W. A., Moran, M. A., and Hodson, R. E.: In situ reverse transcription an approach to characterize genetic diversity and activities of prokaryotes. Appl. Environ. Microbiol., 63, 4907-4913 (1997).
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4907-4913
    • Chen, E.1    Gonzalez, J.M.2    Dustman, W.A.3    Moran, M.A.4    Hodson, R.E.5
  • 24
    • 0033732906 scopus 로고    scopus 로고
    • Tailoring of highly efficient nitrifying biofilms in fluidized bed for ammonia-rich industrial wastewater treatment
    • Tsuneda, S., Miyoshi, T., Aoi, Y., and Hirata, A.: Tailoring of highly efficient nitrifying biofilms in fluidized bed for ammonia-rich industrial wastewater treatment. Wat. Sci. Tech., 42, 357-362 (2000).
    • (2000) Wat. Sci. Tech. , vol.42 , pp. 357-362
    • Tsuneda, S.1    Miyoshi, T.2    Aoi, Y.3    Hirata, A.4
  • 25
    • 0026542152 scopus 로고
    • Immobilization of nitrifying bacteria by polyethylene glycol prepolymer
    • Sumino, T., Nakamura, H., Mori, N., and Kawaguchi, Y.: Immobilization of nitrifying bacteria by polyethylene glycol prepolymer. J. Ferment. Bioeng., 73, 37-42 (1992).
    • (1992) J. Ferment. Bioeng. , vol.73 , pp. 37-42
    • Sumino, T.1    Nakamura, H.2    Mori, N.3    Kawaguchi, Y.4
  • 26
    • 0036184048 scopus 로고    scopus 로고
    • Three-dimensional immobilization of bacterial cells with a fibrous network and its application in a high-rate fixed-bed nitrifying bioreactor
    • Hayashi, H., Ono, M., Tsuneda, S., and Hirata, A.: Three-dimensional immobilization of bacterial cells with a fibrous network and its application in a high-rate fixed-bed nitrifying bioreactor. J. Chem. Eng. Jpn., 35, 68-75 (2002).
    • (2002) J. Chem. Eng. Jpn. , vol.35 , pp. 68-75
    • Hayashi, H.1    Ono, M.2    Tsuneda, S.3    Hirata, A.4
  • 27
    • 0034281838 scopus 로고    scopus 로고
    • Microbial ecology of nitrifying bacteria in wastewater treatment process examined by fluorescence in situ hybridization
    • Aoi, Y., Miyoshi, T., Okamoto, T., Tsuneda, S, Hirata, A., Kitayama, A., and Nagamune, T.: Microbial ecology of nitrifying bacteria in wastewater treatment process examined by fluorescence in situ hybridization. J. Biosci. Bioeng., 90, 234-240 (2000).
    • (2000) J. Biosci. Bioeng. , vol.90 , pp. 234-240
    • Aoi, Y.1    Miyoshi, T.2    Okamoto, T.3    Tsuneda, S.4    Hirata, A.5    Kitayama, A.6    Nagamune, T.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.