The three-dimensional structure of the ribosome and its components

Annual Review of Biophysics and Biomolecular Structure

Volumn 27, Issue , 1998, Pages 35-58

  Moore, Peter B ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

Crystallography; NMR; Ribonucleoproteins; Ribosomal proteins; rRNA

Indexed keywords

RIBOSOME PROTEIN; RIBOSOME RNA;

CHEMICAL COMPOSITION; ELECTRON MICROSCOPY; HUMAN; NONHUMAN; PRIORITY JOURNAL; PROTEIN QUATERNARY STRUCTURE; REVIEW; RIBOSOME; RIBOSOME SUBUNIT; RNA SEQUENCE; RNA STRUCTURE;

ANIMALS; CRYSTALLOGRAPHY, X-RAY; ESCHERICHIA COLI; MODELS, MOLECULAR; MODELS, STRUCTURAL; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACID CONFORMATION; PROTEIN CONFORMATION; RIBOSOMAL PROTEINS; RIBOSOMES; RNA, RIBOSOMAL;

EID: 0031803521     PISSN: 10568700     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.biophys.27.1.35     Document Type: Review

References (22)

1. Aevarsson A, Brazhnikov E, Garber M, Zheltonorova J, Chirgadze Y, et al. 1994. Three-dimensional structure of the ribosomal translocase: elongation factor G from Themus thermophilus. EMBO J. 13:3669-77
2. Agrawal RK, Penczek P, Grassucci RA, Li Y, Leith A, et al. 1996. Direct visualization of A-, P-, and E-site transfer RNAs in the Escherichia coli ribosome. Science 271:1000-2
3. Berglund H, Rak A, Serganov A, Garber M, Hard T. 1997. Solution structure of the ribosomal RNA binding protein S15 from Thermits thermophilus. Nat. Struct. Biol. 4:20-23
4. Bemabeu C, Lake JA. 1982. Nascent polypeptide chains emerge from the exit domain of the large ribosomal subunit: immune mapping of the nascent chain. Proc. Natl. Acad. Sci. USA 79:3111-15
5. Betzel C, Lorenz S, Fuerste JP, Bald R, Zhang M, et al. 1994. Crystal structure of domain A of Thermus flavus 5S rRNA and the contribution of water to its structure. FEES Lett. 351:159-64
6. Brimacombe R. 1995. The structure of ribosomal RNA: a three-dimensional jigsaw puzzle. (Review). Eur J. Biochem. 230:365-83
7. Brownlee GG, Sanger F, Barrell BG. 1968. The sequence of 5S ribosomal ribonucleic acid. J. Mol. Biol. 34:379-112
8. 7a. Butcher SE, Dieckmann T, Feigon J. 1997. Solution structure of the conserved 16S-like ribosomal RNA UGAA tetraloop. J. Mol. Biol. 268:348-58
9. Bycroft M, Hubbard TJP, Proctor M, Freund SMV, Murzin AG. 1997. The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold. Cell 88:235-42
10. Capel MS, Engelman DM, Freeborn BR, Kjeldgaard M, Langer JA, et al. 1987. A complete mapping of the proteins in the small ribosomal subunit of E. coli. Science 238:1403-6
11. Capel MS, Kjeldgaard M, Engelman DM, Moore PB. 1988. The positions of S2, S13, S16, S17, S19, and S21 in the 30S ribosomal subunit of Escherichia coli. J. Mol. Biol. 200:65-87
12. Cate J, Gooding AR, Podell E, Zhou K, Golden BL, et al. 1996. Crystal structure of a group I ribozyme domain: principles of RNA packing. Science 273:1678-85
13. Cheong C, Varani G, Tinoco I. 1990. Solution structure of an unusually stable RNA hairpin, 5′GGAC(UUCG)GUCC. Nature 346:680-82
14. Correll CC, Freeborh B, Moore PB, Steitz TA. 1998. Metals, motifs and recognition in the crystal structure of a 5S rRNA domain. Cell. In press
15. Dallas AD, Moore PB. 1998. The solution structure of the loop E/loop D region of E. coli 5S rRNA. Structure. In press
16. Davies C, Ramakrishnan V, White SW. 1996. Structural evidence for specific S8-RNA and S8-protein interactions with the 30S ribosomal subunit: ribosomal protein S8 from Bacillus stearothermophilus at 1.9 C resolution. Structure 4:1093-1105
17. Davies C, White SW, Ramakrishnan V. 1996. The crystal structure of ribosomal protein L14 reveals an important organizational component of the translational apparatus. Structure 4:55-66
18. Dokudovskaya S, Dontsova O, Shpanchenko O, Bogdanov A, Brimacombe R. 1996. Loop IV of 5S ribosomal RNA has contacts both to domain II and to domain V of the 23S RNA. RNA 2:146-52
19. Easterwood TR, Harvey SC. 1995. Modeling the structure of the ribosome. Biochem. Cell Biol. 73:751-56
20. Endo Y, Mitsui M, Motizuki M, Tsurugi K. 1987. The mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes. The site and the characteristics of the modification in 28S ribosomal RNA caused by the toxins. J. Biol. Chem. 262:5908-12
21. Endo Y, Wool IG. 1982. The site of action of alpha sarcin on eukaryotic ribosomes. J. Biol. Chem. 257:9054-60
22. Engelman DM, Moore PB. 1972. A new method for the determination of biological quaternary structure by neutron scattering. Proc. Natl. Acad. Sci. USA 69:1997-99