-
1
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch A, Apweiler R: The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res 2000, 28:45-48.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
2
-
-
0035172240
-
Protein Information Resource: A community resource for expert annotation of protein data
-
Barker WC, Garavelli JS, Huang H, McGarvey PB, Orcutt BC, Srinivasarao GY, Xiao C, Yeh LS, Ledley RS, Janda JF et al.: Protein Information Resource: a community resource for expert annotation of protein data. Nucleic Acids Res 2001, 29:29-32.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 29-32
-
-
Barker, W.C.1
Garavelli, J.S.2
Huang, H.3
McGarvey, P.B.4
Orcutt, B.C.5
Srinivasarao, G.Y.6
Xiao, C.7
Yeh, L.S.8
Ledley, R.S.9
Janda, J.F.10
-
3
-
-
0032952229
-
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
-
Bateman A, Birney E, Durbin R, Eddy SR, Finn RD, Sonnhammer EL: Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Res 1999, 27:260-262.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 260-262
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Finn, R.D.5
Sonnhammer, E.L.6
-
4
-
-
0032919370
-
SMART: Identification and annotation of domains from signalling and extracellular protein sequences
-
Ponting CP, Schultz J, Milpetz F, Bork P: SMART: identification and annotation of domains from signalling and extracellular protein sequences. Nucleic Acids Res 1999, 27:229-232.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 229-232
-
-
Ponting, C.P.1
Schultz, J.2
Milpetz, F.3
Bork, P.4
-
5
-
-
0033957801
-
PRINTS-S: The database formerly known as PRINTS
-
Attwood TK, Croning MDR, Flower DR, Lewis AP, Mabey JE, Scordis P, Selley J, Wright W: PRINTS-S: the database formerly known as PRINTS. Nucleic Acids Res 2000, 28:225-227.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 225-227
-
-
Attwood, T.K.1
Croning, M.D.R.2
Flower, D.R.3
Lewis, A.P.4
Mabey, J.E.5
Scordis, P.6
Selley, J.7
Wright, W.8
-
6
-
-
0035166973
-
InterPro database, an integrated documentation resource for protein families, domains and functional sites
-
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MDR et al.: InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res 2001, 29:37-40.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 37-40
-
-
Apweiler, R.1
Attwood, T.K.2
Bairoch, A.3
Bateman, A.4
Birney, E.5
Biswas, M.6
Bucher, P.7
Cerutti, L.8
Corpet, F.9
Croning, M.D.R.10
-
7
-
-
18444402182
-
The Ensembi genome database project
-
Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T et al.: The Ensembi genome database project. Nucleic Acids Res 2002, 30:38-41.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Cameron, G.4
Chen, Y.5
Clark, L.6
Cox, T.7
Cuff, J.8
Curwen, V.9
Down, T.10
-
8
-
-
0033757806
-
The Protein Data Bank and the challenge of structural genomics
-
Berman HM, Bhat TN, Bourne PE, Feng Z, Gilliland G, Weissig H, Westbrook J: The Protein Data Bank and the challenge of structural genomics. Nat Struct Biol 2000, 7:957-959.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 957-959
-
-
Berman, H.M.1
Bhat, T.N.2
Bourne, P.E.3
Feng, Z.4
Gilliland, G.5
Weissig, H.6
Westbrook, J.7
-
9
-
-
0036084625
-
SCOP database in 2002: Refinements accommodates structural genomics
-
Lo Conte L, Brenner SE, Hubbard TJP, Chothia C, Murzin A: SCOP database in 2002: refinements accommodates structural genomics. Nucleic Acid Res 2002, 30:264-267.
-
(2002)
Nucleic Acid Res
, vol.30
, pp. 264-267
-
-
Lo Conte, L.1
Brenner, S.E.2
Hubbard, T.J.P.3
Chothia, C.4
Murzin, A.5
-
10
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C: SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol Biol 1995, 247:536-540.
-
(1995)
J. Mol. Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
11
-
-
0033985050
-
Assigning genomic sequences to CATH
-
Pearl FM, Lee D, Bray JE, Sillitoe I, Todd AE, Harrison AP, Thornton JM, Orengo CA: Assigning genomic sequences to CATH. Nucleic Acids Res 2000, 28:277-282.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 277-282
-
-
Pearl, F.M.1
Lee, D.2
Bray, J.E.3
Sillitoe, I.4
Todd, A.E.5
Harrison, A.P.6
Thornton, J.M.7
Orengo, C.A.8
-
12
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
13
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
14
-
-
0036087630
-
CDD: A database of conserved domain alignments with links to domain three-dimensional structure
-
Marchler-Bauer A, Panchenko AR, Shoemaker BA, Thiessen PA, Geer LY, Bryant SH: CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res 2002, 30:281-283.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 281-283
-
-
Marchler-Bauer, A.1
Panchenko, A.R.2
Shoemaker, B.A.3
Thiessen, P.A.4
Geer, L.Y.5
Bryant, S.H.6
-
15
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR: Profile hidden Markov models. Bioinformatics 1998, 14:755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
16
-
-
0032613203
-
Predicting protein structure using only sequence information
-
Karplus K, Barrett C, Cline M, Diekhans M, Grate L, Hughey R: Predicting protein structure using only sequence information. Proteins 1999, 37:121-125.
-
(1999)
Proteins
, vol.37
, pp. 121-125
-
-
Karplus, K.1
Barrett, C.2
Cline, M.3
Diekhans, M.4
Grate, L.5
Hughey, R.6
-
17
-
-
0027162768
-
Sweet-tasting protein monellin is related to the cystatin family of thiol proteinase inhibitors
-
Murzin AG: Sweet-tasting protein monellin is related to the cystatin family of thiol proteinase inhibitors. J Mol Biol 1993, 230:689-694.
-
(1993)
J. Mol. Biol
, vol.230
, pp. 689-694
-
-
Murzin, A.G.1
-
18
-
-
0031566432
-
Recognition of analogous and homologous protein folds: Analysis of sequence and structure conservation
-
Russell RB, Saqi MA, Sayle RA, Bates PA, Sternberg MJ: Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation. J Mol Biol 1997, 269:423-439.
-
(1997)
J. Mol. Biol
, vol.269
, pp. 423-439
-
-
Russell, R.B.1
Saqi, M.A.2
Sayle, R.A.3
Bates, P.A.4
Sternberg, M.J.5
-
19
-
-
0034595501
-
Enhanced genome annotation using structural profiles in the program 3D-PSSM
-
Kelley LA, MacCallum RM, Sternberg MJ: Enhanced genome annotation using structural profiles in the program 3D-PSSM. J Mol Biol 2000, 299:499-520.
-
(2000)
J. Mol. Biol
, vol.299
, pp. 499-520
-
-
Kelley, L.A.1
MacCallum, R.M.2
Sternberg, M.J.3
-
20
-
-
0035967880
-
FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
-
Shi J, Blundell TL, Mizuguchi K: FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J Mol Biol 2001, 310:243-257.
-
(2001)
J. Mol. Biol
, vol.310
, pp. 243-257
-
-
Shi, J.1
Blundell, T.L.2
Mizuguchi, K.3
-
21
-
-
0026690571
-
A new approach to protein fold recognition
-
Jones DT, Taylor WR, Thornton JM: A new approach to protein fold recognition. Nature 1992, 358:86-89.
-
(1992)
Nature
, vol.358
, pp. 86-89
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
22
-
-
0033537993
-
GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
-
Jones DT: GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences. J Mol Biol 1999, 287:797-815.
-
(1999)
J. Mol. Biol
, vol.287
, pp. 797-815
-
-
Jones, D.T.1
-
23
-
-
0032605879
-
Successful recognition of protein folds using threading methods biased by sequence similarity and predicted secondary structure
-
Jones DT, Tress M, Bryson K, Hadley C: Successful recognition of protein folds using threading methods biased by sequence similarity and predicted secondary structure. Proteins 1999, 37:104-111.
-
(1999)
Proteins
, vol.37
, pp. 104-111
-
-
Jones, D.T.1
Tress, M.2
Bryson, K.3
Hadley, C.4
-
24
-
-
0035830505
-
A biological atlas of functional maps
-
Vidal M: A biological atlas of functional maps. Cell 104:333-339.
-
Cell
, vol.104
, pp. 333-339
-
-
Vidal, M.1
-
25
-
-
0035941106
-
The influence of the proinflammatory cytokine, osteopontin, on autoimmune demyelinating disease
-
Chabas D, Baranzini SE, Mitchell D, Bernard CC, Rittling SR, Denhardt DT, Sobel RA, Lock C, Karpuj M, Pedotti R et al.: The influence of the proinflammatory cytokine, osteopontin, on autoimmune demyelinating disease. Science 2001, 294:1731-1735.
-
(2001)
Science
, vol.294
, pp. 1731-1735
-
-
Chabas, D.1
Baranzini, S.E.2
Mitchell, D.3
Bernard, C.C.4
Rittling, S.R.5
Denhardt, D.T.6
Sobel, R.A.7
Lock, C.8
Karpuj, M.9
Pedotti, R.10
-
26
-
-
0034029917
-
Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics
-
Lai CH, Chou CY, Ch'ang LY, Liu CS, Lin W: Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. Genome Res 2000, 10:703-713.
-
(2000)
Genome Res
, vol.10
, pp. 703-713
-
-
Lai, C.H.1
Chou, C.Y.2
Ch'ang, L.Y.3
Liu, C.S.4
Lin, W.5
-
27
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA et al.: The sequence of the human genome. Science 2001, 291:1304-1351.
-
(2000)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
-
28
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W et al.: Initial sequencing and analysis of the human genome. Nature 2001, 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
29
-
-
0034995092
-
Completeness in structural genomics
-
Vitkup D, Melamud E, Moult J, Sander C: Completeness in structural genomics. Nat Struct Biol 2001, 8:559-566.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 559-566
-
-
Vitkup, D.1
Melamud, E.2
Moult, J.3
Sander, C.4
-
30
-
-
0036228122
-
Structural similarity to link sequence space: New potential superfamilies and implications for structural genomics
-
Aloy P, Oliva B, Querol E, Aviles FX, Russell RB: Structural similarity to link sequence space: New potential superfamilies and implications for structural genomics. Protein Sci 2002, 11:1101-1116.
-
(2002)
Protein Sci
, vol.11
, pp. 1101-1116
-
-
Aloy, P.1
Oliva, B.2
Querol, E.3
Aviles, F.X.4
Russell, R.B.5
-
31
-
-
0034601917
-
8 barrels: Implications for the evolution of metabolic pathways
-
8 barrels: implications for the evolution of metabolic pathways. J Mol Biol 2000,
-
(2000)
J. Mol. Biol
, vol.303
, pp. 627-641
-
-
Copley, R.R.1
Bork, P.2
|