-
1
-
-
0030310296
-
Fast protein fold recognition via sequence to structure alignment and contact capacity potentials
-
Singapore: World Scientific Publishing Co
-
Alexandrov N. N., Nussinov R., Zimmer R. M. Fast protein fold recognition via sequence to structure alignment and contact capacity potentials. Pacific Symposium on Biocomputing. 1996;World Scientific Publishing Co, Singapore.
-
(1996)
Pacific Symposium on Biocomputing
-
-
Alexandrov, N.N.1
Nussinov, R.2
Zimmer, R.M.3
-
2
-
-
0023660022
-
Correlation of co-ordinate amino acid substitutions with function in viruses related to tobacco mosaic virus
-
Altschuh D., Lesk A. M., Bloomer A. C., Klug A. Correlation of co-ordinate amino acid substitutions with function in viruses related to tobacco mosaic virus. J. Mol. Biol. 193:1987;693-707.
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 693-707
-
-
Altschuh, D.1
Lesk, A.M.2
Bloomer, A.C.3
Klug, A.4
-
3
-
-
0025303764
-
Protein multiple sequence alignment and flexible pattern matching
-
Barton G. J. Protein multiple sequence alignment and flexible pattern matching. Methods Enzymol. 183:1990;403-428.
-
(1990)
Methods Enzymol.
, vol.183
, pp. 403-428
-
-
Barton, G.J.1
-
4
-
-
0027412196
-
Alscript: A tool to format multiple sequence alignments
-
Barton G. J. Alscript: a tool to format multiple sequence alignments. Protein Eng. 6:1993;37-40.
-
(1993)
Protein Eng.
, vol.6
, pp. 37-40
-
-
Barton, G.J.1
-
5
-
-
0023518540
-
A strategy for the rapid multiple alignment of protein sequences: Confidence levels from tertiary structure comparisons
-
Barton G. J., Sternberg M. J. E. A strategy for the rapid multiple alignment of protein sequences: confidence levels from tertiary structure comparisons. J. Mol. Biol. 198:1987;327-337.
-
(1987)
J. Mol. Biol.
, vol.198
, pp. 327-337
-
-
Barton, G.J.1
Sternberg, M.J.E.2
-
7
-
-
0020483945
-
Evolution of proteins formed by β-sheets. I. Plastocyanin and azurin
-
Chothia C., Lesk A. M. Evolution of proteins formed by β-sheets. I. Plastocyanin and azurin. J. Mol. Biol. 160:1982;309-323.
-
(1982)
J. Mol. Biol.
, vol.160
, pp. 309-323
-
-
Chothia, C.1
Lesk, A.M.2
-
8
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia C., Lest A. M. The relation between the divergence of sequence and structure in proteins. EMBO J. 5:1986;823-826.
-
(1986)
EMBO J.
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lest, A.M.2
-
9
-
-
0009130599
-
A structural explanation of the twilight zone or protein sequence homology
-
Chung S. Y., Subbiah S. A structural explanation of the twilight zone or protein sequence homology. Curr. Biol. 4:1996;1123-1127.
-
(1996)
Curr. Biol.
, vol.4
, pp. 1123-1127
-
-
Chung, S.Y.1
Subbiah, S.2
-
10
-
-
0000228203
-
A model of evolutionary change in proteins, matrices for detecting distant relationships
-
Washington: National Biomedical Research Foundation
-
Dayhoff M. O., Schwartz R. M., Orcutt B. C. A model of evolutionary change in proteins, matrices for detecting distant relationships. Atlas of Protein Sequence and Structure. 1978;National Biomedical Research Foundation, Washington.
-
(1978)
Atlas of Protein Sequence and Structure
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
11
-
-
0029874551
-
Protein fold recognition using sequence-derived predictions
-
Fischer D., Eisenberg D. Protein fold recognition using sequence-derived predictions. Protein Sci. 5:1996;947-955.
-
(1996)
Protein Sci.
, vol.5
, pp. 947-955
-
-
Fischer, D.1
Eisenberg, D.2
-
12
-
-
0027485083
-
Comparison of conformational characteristics in structurally similar protein pairs
-
Flores T. P., Orengo C. A., Moss D. S., Thornton J. M. Comparison of conformational characteristics in structurally similar protein pairs. Protein Sci. 2:1993;1811-1826.
-
(1993)
Protein Sci.
, vol.2
, pp. 1811-1826
-
-
Flores, T.P.1
Orengo, C.A.2
Moss, D.S.3
Thornton, J.M.4
-
13
-
-
0026656815
-
Exhaustive matching of the entire protein sequence database
-
Gonnet G. H., Cohen M. A., Benner S. A. Exhaustive matching of the entire protein sequence database. Science. 256:1992;1443-1444.
-
(1992)
Science
, vol.256
, pp. 1443-1444
-
-
Gonnet, G.H.1
Cohen, M.A.2
Benner, S.A.3
-
14
-
-
0026602877
-
Comparison of the hemocyanin β-barrel with other greek key β-barrels: Possible improtance of the "β-zipper" in protein structure and folding
-
Hazes B., Hol W. G. J. Comparison of the hemocyanin β-barrel with other greek key β-barrels: possible improtance of the "β-zipper" in protein structure and folding. Proteins: Struct. Funct. Genet. 12:1992;278-298.
-
(1992)
Proteins: Struct. Funct. Genet.
, vol.12
, pp. 278-298
-
-
Hazes, B.1
Hol, W.G.J.2
-
15
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff S., Henikoff J. G. Amino acid substitution matrices from protein blocks. Proc. Natl Acad. Sci. USA. 89:1992;10915-10919.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
16
-
-
0029785147
-
Mapping the protein universe
-
Holm L., Sander C. Mapping the protein universe. Science. 273:1996a;595-602.
-
(1996)
Science
, vol.273
, pp. 595-602
-
-
Holm, L.1
Sander, C.2
-
17
-
-
0029918694
-
The fssp database - Fold classification based on structure alignment of proteins
-
Holm L., Sander C. The fssp database - fold classification based on structure alignment of proteins. Nucl. Acids Res. 24:1996b;206-209.
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 206-209
-
-
Holm, L.1
Sander, C.2
-
18
-
-
0000338489
-
Comparison of solvent-inaccessible cores of homologous proteins - Definitions useful for protein modelling
-
Hubbard T. J. P., Blundell T. L. Comparison of solvent-inaccessible cores of homologous proteins - definitions useful for protein modelling. Protein Eng. 1:1987;159-171.
-
(1987)
Protein Eng.
, vol.1
, pp. 159-171
-
-
Hubbard, T.J.P.1
Blundell, T.L.2
-
19
-
-
0027305858
-
Alignment and searching for common protein folds using a data bank of structural templates
-
Johnson M. S., Overginton J. P., Blundell T. L. Alignment and searching for common protein folds using a data bank of structural templates. J. Mol. Biol. 231:1993;735-752.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 735-752
-
-
Johnson, M.S.1
Overginton, J.P.2
Blundell, T.L.3
-
20
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones D. T., Taylor W. R., Thornton J. M. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:1992;275-282.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
21
-
-
0020997912
-
A dictionary of protein secondary structure
-
Kabsch W., Sander C. A dictionary of protein secondary structure. Biopolymers. 22:1983;2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
22
-
-
0028579713
-
Different protein sequences can give rise to highly similar folds through different stabilizing interactions
-
Laurents D. V., Subbiah S., Levitt M. Different protein sequences can give rise to highly similar folds through different stabilizing interactions. Protein Sci. 3:1994;1938-1944.
-
(1994)
Protein Sci.
, vol.3
, pp. 1938-1944
-
-
Laurents, D.V.1
Subbiah, S.2
Levitt, M.3
-
23
-
-
0028818340
-
Protein-structure prediction by threading methods - Evaluation of current techniques
-
Lemer C. M. R., Rooman M. J., Wodak S. J. Protein-structure prediction by threading methods - evaluation of current techniques. Proteins: Struct. Funct. Genet. 23:1995;337-355.
-
(1995)
Proteins: Struct. Funct. Genet.
, vol.23
, pp. 337-355
-
-
Lemer, C.M.R.1
Rooman, M.J.2
Wodak, S.J.3
-
24
-
-
0019332167
-
How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
-
Lesk A. M., Chothia C. How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. J. Mol. Biol. 136:1980;225-270.
-
(1980)
J. Mol. Biol.
, vol.136
, pp. 225-270
-
-
Lesk, A.M.1
Chothia, C.2
-
25
-
-
0020429363
-
Evolution of proteins formed by β-sheets II. The core of the immunoglobulin domains
-
Lesk A. M., Chothia C. Evolution of proteins formed by β-sheets II. The core of the immunoglobulin domains. J. Mol. Biol. 160:1982;325-342.
-
(1982)
J. Mol. Biol.
, vol.160
, pp. 325-342
-
-
Lesk, A.M.1
Chothia, C.2
-
26
-
-
0029165589
-
Thioredoxin - A fold for all reasons
-
Martin J. L. Thioredoxin - a fold for all reasons. Structure. 3:1995;245-250.
-
(1995)
Structure
, vol.3
, pp. 245-250
-
-
Martin, J.L.1
-
27
-
-
0027373949
-
Crystal structure of the DsbA protein required for disulphide bond formation in vivo
-
Martin J. L., Bardwell J. C. A., Kuriyan J. Crystal structure of the DsbA protein required for disulphide bond formation in vivo. Nature. 365:1993;464-468.
-
(1993)
Nature
, vol.365
, pp. 464-468
-
-
Martin, J.L.1
Bardwell, J.C.A.2
Kuriyan, J.3
-
28
-
-
0028019007
-
Structural similarity between the p17 matrix protein of HIV-1 and interferon-γ
-
Matthews S., Barlow P., Boyd J., Barton G., Russell R., Mills H., Cunningham M., Meyers N., Burns N., Clark N., Kingsman S., Kingsman A., Campbell I. Structural similarity between the p17 matrix protein of HIV-1 and interferon-γ Nature. 370:1994;666-668.
-
(1994)
Nature
, vol.370
, pp. 666-668
-
-
Matthews, S.1
Barlow, P.2
Boyd, J.3
Barton, G.4
Russell, R.5
Mills, H.6
Cunningham, M.7
Meyers, N.8
Burns, N.9
Clark, N.10
Kingsman, S.11
Kingsman, A.12
Campbell, I.13
-
29
-
-
0028961335
-
Scop: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin A., Brenner S. E., Hubbard T., Chothia C. scop: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247:1995;536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
30
-
-
0027162768
-
Sweet tasting protein monellin is related to the cystatin family of thiol proteinase inhibitors
-
Murzin A. G. Sweet tasting protein monellin is related to the cystatin family of thiol proteinase inhibitors. J. Mol. Biol. 230:1993a;689-694.
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 689-694
-
-
Murzin, A.G.1
-
31
-
-
0027372804
-
Can homologous proteins evolve different enzymatic activities?
-
Murzin A. G. Can homologous proteins evolve different enzymatic activities? J. Mol. Biol. 18:1993b;403-405.
-
(1993)
J. Mol. Biol.
, vol.18
, pp. 403-405
-
-
Murzin, A.G.1
-
32
-
-
0026556882
-
β-trefoil fold patterns of structure and sequence in the Kunitz inhibitors interleukins-1β and 1α and fibroblast growth factors
-
Murzin A. G., Lesk A. M., Chothia C. β-trefoil fold patterns of structure and sequence in the Kunitz inhibitors interleukins-1β and 1α and fibroblast growth factors. J. Mol. Biol. 223:1992;531-543.
-
(1992)
J. Mol. Biol.
, vol.223
, pp. 531-543
-
-
Murzin, A.G.1
Lesk, A.M.2
Chothia, C.3
-
33
-
-
0027479161
-
OB(oligonucleotide/oligosaccharide binding)-fold: Common structural and functional solution for non-homologous sequences
-
Murzin A. Z. OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences. EMBO J. 12:1993;861-867.
-
(1993)
EMBO J.
, vol.12
, pp. 861-867
-
-
Murzin, A.Z.1
-
34
-
-
0026540411
-
The alpha/beta hydrolase fold
-
Ollis D. L., Cheah E., Cygler M., Dijkstra B., Frolow S. M., Ranken S. M., Harel M., Remington S. J., Silman I., Schrag J. The alpha/beta hydrolase fold. Protein Eng. 5:1992;197-211.
-
(1992)
Protein Eng.
, vol.5
, pp. 197-211
-
-
Ollis, D.L.1
Cheah, E.2
Cygler, M.3
Dijkstra, B.4
Frolow, S.M.5
Ranken, S.M.6
Harel, M.7
Remington, S.J.8
Silman, I.9
Schrag, J.10
-
35
-
-
0028593509
-
Protein superfamilies and domain superfolds
-
Orengo C. A., Jones D. T., Thornton J. M. Protein superfamilies and domain superfolds. Nature. 372:1994;631-634.
-
(1994)
Nature
, vol.372
, pp. 631-634
-
-
Orengo, C.A.1
Jones, D.T.2
Thornton, J.M.3
-
36
-
-
0025104478
-
Tertiary structural constraints on protein evolutionary diversity: Templates, key residues and structure prediction
-
Overington J., Johnson M. S., Sali A., Blundell T. L. Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction. Proc. Roy. Soc. ser. B. 241:1990;132-145.
-
(1990)
Proc. Roy. Soc. Ser. B
, vol.241
, pp. 132-145
-
-
Overington, J.1
Johnson, M.S.2
Sali, A.3
Blundell, T.L.4
-
37
-
-
0026511848
-
A data bank merging related protein structures and sequences
-
Pascarella S., Argos P. A data bank merging related protein structures and sequences. Protein Eng. 5:1992;121-137.
-
(1992)
Protein Eng.
, vol.5
, pp. 121-137
-
-
Pascarella, S.1
Argos, P.2
-
38
-
-
0026452698
-
Evaluation of the sequence template method for protein structure prediction. Discrimination of the β/α-barrel fold
-
Pickett S. D., Saqi M. A. S., Sternberg M. J. E. Evaluation of the sequence template method for protein structure prediction. Discrimination of the β/α-barrel fold. J. Mol. Biol. 228:1992;170-187.
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 170-187
-
-
Pickett, S.D.1
Saqi, M.A.S.2
Sternberg, M.J.E.3
-
39
-
-
0029186289
-
TOPITS: Treading one-dimensional predictions into three-dimensional structures
-
C. Rawlings, D. Clark, R. Altman, L. Hunter, T. Lengauer, & S. Wodak. Menlo Park: AAAI Press
-
Rost B. TOPITS: treading one-dimensional predictions into three-dimensional structures. Rawlings C., Clark D., Altman R., Hunter L., Lengauer T., Wodak S. Proc. 3rd. Int. Conf. Intel. Sys. Mol. Biol. 1995;AAAI Press, Menlo Park.
-
(1995)
Proc. 3rd. Int. Conf. Intel. Sys. Mol. Biol.
-
-
Rost, B.1
-
40
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost B., Sander C. Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol. 232:1993;584-599.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
41
-
-
0028109886
-
Conservation and prediction of solvent accessibility in protein families
-
Rost B., Sander C. Conservation and prediction of solvent accessibility in protein families. Proteins: Struct. Funct. Genet. 20:1994;216-226.
-
(1994)
Proteins: Struct. Funct. Genet.
, vol.20
, pp. 216-226
-
-
Rost, B.1
Sander, C.2
-
42
-
-
0028064006
-
Redefining the goals of protein secondary structure prediction
-
Rost B., Sander C., Schneider R. Redefining the goals of protein secondary structure prediction. J. Mol. Biol. 235:1994;13-26.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 13-26
-
-
Rost, B.1
Sander, C.2
Schneider, R.3
-
43
-
-
0026743174
-
Multiple protein sequence alignment from tertiary structure comparison: Assignment of global and residue confidence levels
-
Russell R. B., Barton G. J. Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels. Proteins: Struct. Funct. Genet. 14:1992;309-323.
-
(1992)
Proteins: Struct. Funct. Genet.
, vol.14
, pp. 309-323
-
-
Russell, R.B.1
Barton, G.J.2
-
44
-
-
0027765576
-
The limits of protein secondary structure prediction accuracy from multiple sequence alignment
-
Russell R. B., Barton G. J. The limits of protein secondary structure prediction accuracy from multiple sequence alignment. J. Mol. Biol. 234:1993;951-957.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 951-957
-
-
Russell, R.B.1
Barton, G.J.2
-
45
-
-
0028081403
-
Structural features can be unconserved in proteins with similar folds: An analysis of side-chain to side-chain contacts, secondary structure and accessibility
-
Russell R. B., Barton G. J. Structural features can be unconserved in proteins with similar folds: An analysis of side-chain to side-chain contacts, secondary structure and accessibility. J. Mol. Biol. 244:1994;332-350.
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 332-350
-
-
Russell, R.B.1
Barton, G.J.2
-
46
-
-
84995072940
-
Protein fold recognition from secondary structure assignments
-
L. Hunter, & B.D. Shriver. Los Alamitos: IEEE Computer Society Press
-
Russell R. B., Copley R. R., Barton G. J. Protein fold recognition from secondary structure assignments. Hunter L., Shriver B. D. Proc. 28th Hawaii. Int. Conf. Sys. Sci. 1995;IEEE Computer Society Press, Los Alamitos.
-
(1995)
Proc. 28th Hawaii. Int. Conf. Sys. Sci.
-
-
Russell, R.B.1
Copley, R.R.2
Barton, G.J.3
-
47
-
-
0029951995
-
Protein fold recognition by mapping predicted secondary structures
-
Russell R. B., Copley R. R., Barton G. J. Protein fold recognition by mapping predicted secondary structures. J. Mol. Biol. 259:1996;349-365.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 349-365
-
-
Russell, R.B.1
Copley, R.R.2
Barton, G.J.3
-
48
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith T. F., Waterman M. S. Identification of common molecular subsequences. J. Mol. Biol. 147:1981;195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
49
-
-
0022591495
-
Classification of amino acid conservation
-
Taylor W. R. Classification of amino acid conservation. J. Theoret. Biol. 119:1986;205-218.
-
(1986)
J. Theoret. Biol.
, vol.119
, pp. 205-218
-
-
Taylor, W.R.1
|