A chloroplast DNA phylogeny of eastern Phlox (Polemoniaceae): Implications of congruence and incongruence with the ITS phylogeny

American Journal of Botany

Volumn 89, Issue 8, 2002, Pages 1324-1335

  Ferguson, Carolyn J ^a   Jansen, Robert K ^b  

^a KANSAS STATE UNIVERSITY   (United States)

^b UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

Hybridization; Incongruence; Introgression; Phlox; Phylogeny; Polemoniaceae; Restriction site data

Indexed keywords

DNA; HYBRIDIZATION; PHYLOGENY;

(EAST); NORTH AMERICA;

EMBRYOPHYTA; PHLOX; PHLOX GLABERRIMA; PHLOX PILOSA; POLEMONIACEAE;

EID: 0036679216     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.89.8.1324     Document Type: Article

References (99)

1. Introgressive hybridization in Phlox bifida
2. Gene trees and organismal histories: A phylogenetic approach to population biology
3. Numerous chloroplast DNA polymorphisms are shared among different populations and species in the aureoid Senecio (Packera) complex
4. Biogeography and floral evolution of Baobabs (Adansonia, Bombacaceae) as inferred from multiple data sets
5. Molecular phylogeny and biogeography of Linanthus (Polemoniaceae)
6. Sectional integrity in Linanthus (Polemoniaceae): A molecular phylogeny of section Dianthoides
7. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction
8. The likelihood of homoploid hybrid speciation
9. Partitioning and combining data in phylogenetic analysis
10. Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae)
11. Can three incongruence tests predict when data should be combined?
12. Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods
13. Phylogenetic relationships of Dipsacales based on rbcL sequences
14. A rapid DNA isolation procedure for small quantities of fresh leaf tissue
15. The retention index and homoplasy excess
16. Testing significance of incongrueuce
17. Confidence limits on phylogenies: An approach using the bootstrap
18. Relationships of eastern North American Phlox (Polemoniaceae) based on ITS sequence data
19. 1 hybrids
20. Obtaining common pruned trees
21. Multiple data sets, congruence, and hypothesis testing for the phylogeny of basal groups of the lizard genus Sceloporus (Squamata, Phrynosomatidae)
22. Likelihood-based tests of topologies in phylogenetics
23. Primary classification and phylogeny of the Polemoniaceae, with comment on molecular cladistics
24. Nomenclature of the main subdivisions of Phlox (Polemoniaceae)
25. Revision of the North American Polemoniaceae
26. Diversification of the North American shrub genus Ceanothus (Rhamnaceae): Conflicting phylogenies from nuclear ribosomal DNA and chloroplast DNA
27. Molecular versus morphological approaches to systematics
28. Approaches for assessing phylogenetic accuracy
29. Combining data in phylogenetic analysis
30. Comparative utility of chloroplast DNA restriction site and DNA sequence data for phylogenetic studies in plants
31. Chloroplast DNA variation and phylogeny of the Ranunculaceae
32. Monophyly and generic relationships of Polemoniaceae based on matK sequences
33. Assessing congruence: Empirical examples from molecular data
34. Heteroplasmy of chloroplast DNA in Medicago
35. When genes tell different stories: The diploid genera of Triticeae (Gramineae)
36. Comparisons of phylogenetic hypotheses among different data sets in dwarf dandelions (Krigia, Asteraceae): Additional information from internal transcribed spacer sequences of nuclear ribosomal DNA
37. Quantitative phyletics and the evolution of anurans
38. An algorithm to find agreement subtrees
39. The comparison of morphological and molecular data in phylogenetic systematics
40. Tree robustness and clade significance
41. The Phlox pilosa complex: Crossing and chromosome relationships
42. Hybridization between annual species of Phlox: Population structure
43. The genome constitutions of eastern North American Phlox amphiploids
44. Genetic variation in annual Phlox: Self-compatible versus self-incompatible species
45. Reticulate evolution in Phlox as seen through protein electrophoresis
46. Hybridization and evolution in the Phlox pilosa complex
47. Novel flavonoids and reticulate evolution in the Phlox pilosa-P. drummondii complex
48. The novel flavonoid chemistry and phylogenetic origin of Phlox floridana
49. The taxonomic status of Microsteris Greene
50. Biparental inheritance of the chloroplast genome in Coreopsis (Asteraceae)
51. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae)
52. The implications of congruence in Menidia
53. Testing species phylogenies and phylogenetic methods with congruence
54. A chloroplast DNA phylogeny of the Solanaceae: Subfamilial relationships and character evolution
55. Chloroplast DNA systematics: A review of methods and data analysis
56. Combining data in phylogenetic systematics: An empirical approach using three molecular data sets in the Solanaceae
57. Isolation and structural analysis of chloroplast DNA
58. Polemoniaceae: Phlox
59. Phylogeny of Polemoniaceae based on nuclear ribosomal internal transcribed spacer DNA sequences
60. Phylogenetic relationships of Polemoniaceae: Inferences from mitochondrial nad1b intron sequences
61. A phylogenetic classification of Polemoniaceae
62. A new species of Phlox (Polemoniaceae) from northern Mexico with an expanded circumscription of subsection Divaricatae
63. Polemoniaceae phylogeny and classification: Implications of sequence data from the chloroplast gene ndhF
64. Pathways, mechanisms, and rates of polyploid formation in flowering plants
65. Analyzing tables of statistical tests
66. Hybrid origins of plant species
67. Phylogenetic consequences of cytoplasmic gene flow in plants
68. Molecular marker incongruence in plant hybrid zones and phylogenetic trees
69. Consensus indices for comparing classifications
70. Patterns of variation in levels of homoplasy
71. The relationship between homoplasy and confidence in a phylogenetic tree
72. Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: Implications for biogeography and concerted evolution
73. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)
74. Reconstructing hybrid speciation using sequences of low copy nuclear genes: Hybrid origins of five Paeonia species based on Adh gene phylogenies
75. Testing hybridization hypotheses based on incongruent gene trees
76. Congruence and consensus in the cotton tribe (Malvaceae)
77. Karyotypes of eastern North American Phlox
78. Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae)
79. The dynamic nature of polyploid genomes
80. Polyploidy: Recurrent formation and genome evolution
81. Phylogenetic analyses of Polemoniaceae using nucleotide sequences of the plastid gene matK
82. When are phylogeny estimates from molecular and morphological data incongruent?
83. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes
84. Molecular phylogenetics and mitochondrial genomic evolution in the Chamaeleonidae (Reptilia, Squamata)
85. Genome evolution in polyploids
86. Phylogenetic incongruence: Window into genome history and molecular evolution
87. An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression
88. Microsteris, Phlox, and an intermediate
89. The genus Phlox
90. Subtribal and generic relationships of Maxillarieae (Orchidaceae) with emphasis on Stanhopeinae: Combined molecular evidence
91. Failure of the ILD to determine data combinability for slow loris phylogeny