메뉴 건너뛰기




Volumn 13, Issue 8, 2002, Pages 936-945

Electrospray tandem mass spectrometry of mixed-sequence RNA/DNA oligonucleotides

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MASS SPECTROMETRY; RNA;

EID: 0036676658     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1044-0305(02)00413-0     Document Type: Article
Times cited : (68)

References (32)
  • 1
    • 0023619361 scopus 로고
    • Sequence-Specific Cleavage of Double Helical DNA by Triple Helix Formation
    • Moser H.E., Dervan P.B. Sequence-Specific Cleavage of Double Helical DNA by Triple Helix Formation. Science. 238:1987;645-650.
    • (1987) Science , vol.238 , pp. 645-650
    • Moser, H.E.1    Dervan, P.B.2
  • 3
    • 0000390381 scopus 로고    scopus 로고
    • Indirect Mass Spectrometric Methods for Characterizing and Sequencing Oligonucleotides
    • Limbach P.A. Indirect Mass Spectrometric Methods for Characterizing and Sequencing Oligonucleotides. Mass Spectrom. Rev. 15:1996;297-336.
    • (1996) Mass Spectrom. Rev. , vol.15 , pp. 297-336
    • Limbach, P.A.1
  • 4
    • 0029851893 scopus 로고    scopus 로고
    • DNA Sequencing by Mass Spectrometry
    • Murray K.K. DNA Sequencing by Mass Spectrometry. J. Mass Spectrom. 31:1996;1203-1215.
    • (1996) J. Mass Spectrom. , vol.31 , pp. 1203-1215
    • Murray, K.K.1
  • 7
    • 0001678484 scopus 로고
    • Ion Trap Tandem Mass Spectrometry Applied to Small Multiply Charged Oligonucleotides with a Modified Base
    • McLuckey S.A., Habibi-Goudarzi S. Ion Trap Tandem Mass Spectrometry Applied to Small Multiply Charged Oligonucleotides with a Modified Base. J. Am. Soc. Mass Spectrom. 5:1994;740-747.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 740-747
    • McLuckey, S.A.1    Habibi-Goudarzi, S.2
  • 8
    • 0000529864 scopus 로고
    • Decomposition of Multiply Charged Oligonucleotide Anions
    • McLuckey S.A., Habibi-Goudarzi S. Decomposition of Multiply Charged Oligonucleotide Anions. J. Am. Chem. Soc. 115:1993;12085-12096.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 12085-12096
    • McLuckey, S.A.1    Habibi-Goudarzi, S.2
  • 9
    • 0029025875 scopus 로고
    • Mass and Sequence Verification of Modified Oligonucleotides Using Electrospray Tandem Mass Spectrometry
    • Barry J.P., Vouros P., Van Schepdael A., Law S.-J. Mass and Sequence Verification of Modified Oligonucleotides Using Electrospray Tandem Mass Spectrometry. J. Mass Spectrom. 30:1995;993-1006.
    • (1995) J. Mass Spectrom. , vol.30 , pp. 993-1006
    • Barry, J.P.1    Vouros, P.2    Van Schepdael, A.3    Law, S.-J.4
  • 10
    • 0029911204 scopus 로고    scopus 로고
    • Sequence Information from 42-108 mer DNAs (Complete for a 50 mer) by Tandem Mass Spectrometry
    • Little D.P., Aaserud D.J., Valaskovic G.A., McLafferty F.W. Sequence Information from 42-108 mer DNAs (Complete for a 50 mer) by Tandem Mass Spectrometry. J. Am. Chem. Soc. 118:1996;9352-9359.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 9352-9359
    • Little, D.P.1    Aaserud, D.J.2    Valaskovic, G.A.3    McLafferty, F.W.4
  • 11
    • 0032960828 scopus 로고    scopus 로고
    • Oligonucleotide Sequencing Using Guanine-Specific Methylation and Electrospray Ionization Ion Trap Mass Spectrometry
    • Marzilli L.A., Barry J.A., Sells T., Law S.-J., Vouros P., Harsch A. Oligonucleotide Sequencing Using Guanine-Specific Methylation and Electrospray Ionization Ion Trap Mass Spectrometry. J. Mass Spectrom. 34:1999;276-280.
    • (1999) J. Mass Spectrom. , vol.34 , pp. 276-280
    • Marzilli, L.A.1    Barry, J.A.2    Sells, T.3    Law, S.-J.4    Vouros, P.5    Harsch, A.6
  • 12
    • 0035561176 scopus 로고    scopus 로고
    • Elucidation of the Initial Step of Oligonucleotide Fragmentation in Matrix-Assisted Laser Desorption/Ionization Using Modified Nucleic Acids
    • Christian N.P., Reilly J.P., Mokler V.R., Wincott F.E., Ellington A.D. Elucidation of the Initial Step of Oligonucleotide Fragmentation in Matrix-Assisted Laser Desorption/Ionization Using Modified Nucleic Acids. J. Am. Soc. Mass Spectrom. 12:2001;744-753.
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 744-753
    • Christian, N.P.1    Reilly, J.P.2    Mokler, V.R.3    Wincott, F.E.4    Ellington, A.D.5
  • 13
    • 0032232683 scopus 로고    scopus 로고
    • Investigations of the Metastable Decay of DNA under Ultraviolet Matrix-Assisted Laser Desorption/Ionization Conditions with Post-Source-Decay Analysis and Hydrogen/Deuterium Exchange
    • Gross J., Leisner A., Hillenkamp F., Hahner S., Karas M., Schäfer J., Lützenkirchen F., Nordhoff E. Investigations of the Metastable Decay of DNA under Ultraviolet Matrix-Assisted Laser Desorption/Ionization Conditions with Post-Source-Decay Analysis and Hydrogen/Deuterium Exchange. J. Am. Soc. Mass Spectrom. 9:1998;866-878.
    • (1998) J. Am. Soc. Mass Spectrom. , vol.9 , pp. 866-878
    • Gross, J.1    Leisner, A.2    Hillenkamp, F.3    Hahner, S.4    Karas, M.5    Schäfer, J.6    Lützenkirchen, F.7    Nordhoff, E.8
  • 15
    • 0023187427 scopus 로고
    • Fast Atom Bombardment Combined with Tandem Mass Spectrometry for Determining Structures of Small Oligonucleotides
    • Cerny R.L., Tomer K.B., Gross M.L., Grotjahn L. Fast Atom Bombardment Combined with Tandem Mass Spectrometry for Determining Structures of Small Oligonucleotides. Anal. Biochem. 165:1987;175-182.
    • (1987) Anal. Biochem. , vol.165 , pp. 175-182
    • Cerny, R.L.1    Tomer, K.B.2    Gross, M.L.3    Grotjahn, L.4
  • 16
    • 33749248364 scopus 로고
    • Low-Energy Collision-Induced Dissociation of Deprotonated Dinucleotides: Determination of the Energetically Favored Dissociation Pathways and the Relative Acidities of the Nucleic Acid Bases
    • Rodgers M.T., Campbell S., Marzluff E.M., Beauchamp J.L. Low-Energy Collision-Induced Dissociation of Deprotonated Dinucleotides Determination of the Energetically Favored Dissociation Pathways and the Relative Acidities of the Nucleic Acid Bases . Int. J. Mass Spectrom. Ion Processes. 137:1994;121-149.
    • (1994) Int. J. Mass Spectrom. Ion Processes , vol.137 , pp. 121-149
    • Rodgers, M.T.1    Campbell, S.2    Marzluff, E.M.3    Beauchamp, J.L.4
  • 17
    • 0029164899 scopus 로고
    • Charged versus Neutral Nucleobase Loss from Multiply Charged Oligonucleotide Anions
    • McLuckey S.A., Vaidyanathan G., Habibi-Goudarzi S. Charged versus Neutral Nucleobase Loss from Multiply Charged Oligonucleotide Anions. J. Mass Spectrom. 30:1995;1222-1229.
    • (1995) J. Mass Spectrom. , vol.30 , pp. 1222-1229
    • McLuckey, S.A.1    Vaidyanathan, G.2    Habibi-Goudarzi, S.3
  • 18
    • 0032232419 scopus 로고    scopus 로고
    • Structure and Fragmentation Mechanisms of Isomeric T-Rich Oligodeoxynucleotides: A Comparison of Four Tandem Mass Spectrometric Methods
    • Wang Z., Wan K.X., Ramanathan R., Taylor J.S., Gross M.L. Structure and Fragmentation Mechanisms of Isomeric T-Rich Oligodeoxynucleotides A Comparison of Four Tandem Mass Spectrometric Methods . J. Am. Soc. Mass Spectrom. 9:1998;683-691.
    • (1998) J. Am. Soc. Mass Spectrom. , vol.9 , pp. 683-691
    • Wang, Z.1    Wan, K.X.2    Ramanathan, R.3    Taylor, J.S.4    Gross, M.L.5
  • 19
    • 0035567094 scopus 로고    scopus 로고
    • Fragmentation Mechanisms of Oligodeoxynucleotides: Effects of Replacing Phosphates with Methylphosphonates and Thymines with Other Bases in T-rich Sequences
    • Wan K.X., Gross M.L. Fragmentation Mechanisms of Oligodeoxynucleotides Effects of Replacing Phosphates with Methylphosphonates and Thymines with Other Bases in T-rich Sequences . J. Am. Soc. Mass Spectrom. 12:2001;580-589.
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 580-589
    • Wan, K.X.1    Gross, M.L.2
  • 20
    • 0020802538 scopus 로고
    • Bioorganic Applications of Mass Spectrometry. 3. Fast-Atom-Bombardment-Induced Zwitterionic Oligonucleotide Quasimolecular Ions Sequenced by MS/MS
    • Panico M., Sindona G., Uccella N. Bioorganic Applications of Mass Spectrometry. 3. Fast-Atom-Bombardment-Induced Zwitterionic Oligonucleotide Quasimolecular Ions Sequenced by MS/MS. J. Am. Chem. Soc. 105:1983;5607-5610.
    • (1983) J. Am. Chem. Soc. , vol.105 , pp. 5607-5610
    • Panico, M.1    Sindona, G.2    Uccella, N.3
  • 21
    • 0035564363 scopus 로고    scopus 로고
    • Metastable Decay of Negatively Charged Oligodeoxynucleotides Analyzed With Ultraviolet Matrix-Assisted Laser Desorption/Ionization Post-Source Decay and Deuterium Exchange
    • Gross J., Hillenkamp F., Wan K.X., Gross M.L. Metastable Decay of Negatively Charged Oligodeoxynucleotides Analyzed With Ultraviolet Matrix-Assisted Laser Desorption/Ionization Post-Source Decay and Deuterium Exchange. J. Am. Soc. Mass Spectrom. 12:2001;180-192.
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 180-192
    • Gross, J.1    Hillenkamp, F.2    Wan, K.X.3    Gross, M.L.4
  • 22
    • 0035561180 scopus 로고    scopus 로고
    • Fragmentation Mechanisms of Oligodeoxynucleotides Studied by H/D Exchange and Electrospray Ionization Tandem Mass Spectrometry
    • Wan K.X., Gross J., Hillenkamp F., Gross M.L. Fragmentation Mechanisms of Oligodeoxynucleotides Studied by H/D Exchange and Electrospray Ionization Tandem Mass Spectrometry. J. Am. Soc. Mass Spectrom. 12:2001;193-205.
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 193-205
    • Wan, K.X.1    Gross, J.2    Hillenkamp, F.3    Gross, M.L.4
  • 23
    • 0030200945 scopus 로고    scopus 로고
    • Interpretation of Oligonucleotide Mass Spectra for Determination of Sequence Using Electrospray Ionization and Tandem Mass Spectrometry
    • Ni J., Pomerantz S.C., Rozenski J., Zhang Y., McClosky J.A. Interpretation of Oligonucleotide Mass Spectra for Determination of Sequence Using Electrospray Ionization and Tandem Mass Spectrometry. Anal. Chem. 68:1996;1989-1999.
    • (1996) Anal. Chem. , vol.68 , pp. 1989-1999
    • Ni, J.1    Pomerantz, S.C.2    Rozenski, J.3    Zhang, Y.4    McClosky, J.A.5
  • 24
    • 0031081531 scopus 로고    scopus 로고
    • Controlling DNA Fragmentation in MALDI-MS by Chemical Modification
    • Tang W., Zhu L., Smith L.M. Controlling DNA Fragmentation in MALDI-MS by Chemical Modification. Anal Chem. 69:1997;302-312.
    • (1997) Anal Chem. , vol.69 , pp. 302-312
    • Tang, W.1    Zhu, L.2    Smith, L.M.3
  • 25
    • 0033585581 scopus 로고    scopus 로고
    • Targeted Site-Specific Gas-Phase Cleavage of Oligoribonucleotides. Application in Mass Spectrometry-Based Identification of Ligand Binding Sites
    • Griffey R.H., Greig M.J., An H., Sasmor H., Manalili S. Targeted Site-Specific Gas-Phase Cleavage of Oligoribonucleotides. Application in Mass Spectrometry-Based Identification of Ligand Binding Sites. J. Am. Chem. Soc. 121:1999;474-475.
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 474-475
    • Griffey, R.H.1    Greig, M.J.2    An, H.3    Sasmor, H.4    Manalili, S.5
  • 26
    • 0035154953 scopus 로고    scopus 로고
    • RNA Fragmentation Studied in a Matrix-Assisted Laser Desorption/Ionization Tandem Quadrupole/Orthogonal Time-of-Flight Mass Spectrometer
    • Kirpekar F., Krogh T.N. RNA Fragmentation Studied in a Matrix-Assisted Laser Desorption/Ionization Tandem Quadrupole/Orthogonal Time-of-Flight Mass Spectrometer. Rapid Commun. Mass Spectrom. 15:2001;8-14.
    • (2001) Rapid Commun. Mass Spectrom. , vol.15 , pp. 8-14
    • Kirpekar, F.1    Krogh, T.N.2
  • 27
    • 0035929674 scopus 로고    scopus 로고
    • Conformational Diversity versus Nucleic Acid Triplex Stability, a Combinatorial Study
    • Méndez-Bernal E., Leumann C.J. Conformational Diversity versus Nucleic Acid Triplex Stability, a Combinatorial Study. J. Biol. Chem. 276:2001;35320-35327.
    • (2001) J. Biol. Chem. , vol.276 , pp. 35320-35327
    • Méndez-Bernal, E.1    Leumann, C.J.2
  • 29
    • 0025596909 scopus 로고
    • Gas-Phase Proton Affinity of Deoxyribonucleosides and Related Nucleobases by Fast Atom Bombardment Tandem Mass Spectrometry
    • Greco F., Liguori A., Sindona G., Uccella N. Gas-Phase Proton Affinity of Deoxyribonucleosides and Related Nucleobases by Fast Atom Bombardment Tandem Mass Spectrometry. J. Am. Chem. Soc. 112:1990;9092-9096.
    • (1990) J. Am. Chem. Soc. , vol.112 , pp. 9092-9096
    • Greco, F.1    Liguori, A.2    Sindona, G.3    Uccella, N.4
  • 30
    • 0033975219 scopus 로고    scopus 로고
    • Survey of the Proton Affinities of Adenine, Cytosine, Thymine and Uracil Dideoxyribonucleosides, Deoxyribonucleosides and Ribonucleosides
    • Liguori A., Napoli A., Sindona G. Survey of the Proton Affinities of Adenine, Cytosine, Thymine and Uracil Dideoxyribonucleosides, Deoxyribonucleosides and Ribonucleosides. J. Mass Spectrom. 35:2000;139-144.
    • (2000) J. Mass Spectrom. , vol.35 , pp. 139-144
    • Liguori, A.1    Napoli, A.2    Sindona, G.3
  • 31
    • 0014229812 scopus 로고
    • Interactions of Polynucleotides and Their Components: I. Dissociation Constants of the Bases and Their Derivatives
    • Clauwaert J., Stockx J. Interactions of Polynucleotides and Their Components I. Dissociation Constants of the Bases and Their Derivatives . Z. Naturforsch. B. 23:1968;25-30.
    • (1968) Z. Naturforsch. B , vol.23 , pp. 25-30
    • Clauwaert, J.1    Stockx, J.2
  • 32
    • 0029851586 scopus 로고    scopus 로고
    • The Effect of Backbone Charge on the Collision-Induced Dissociation of Oligonucleotides
    • Bartlett M.G., McCloskey J.A., Manalili S., Griffey R.H. The Effect of Backbone Charge on the Collision-Induced Dissociation of Oligonucleotides. J. Mass Spectrom. 31:1996;1277-1283.
    • (1996) J. Mass Spectrom. , vol.31 , pp. 1277-1283
    • Bartlett, M.G.1    McCloskey, J.A.2    Manalili, S.3    Griffey, R.H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.