-
1
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann RD, Adams MD, White O, et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 1995;269:496-512
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
-
2
-
-
0011591815
-
-
NCBI. Genome Resources. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Genome.
-
-
-
-
3
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD, Myers EW, et al. The sequence of the human genome. Science 2001;291:1304-51.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
-
4
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, et al. Initial sequencing and analysis of the human genome. Nature 2001;409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
5
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
-
Yu J, Hu S, Wang J, et al. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 2002;296:79-92.
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Yu, J.1
Hu, S.2
Wang, J.3
-
6
-
-
0037023349
-
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
-
Goff SA, Ricke D, Lan TH, et al. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 2002;296:92-100.
-
(2002)
Science
, vol.296
, pp. 92-100
-
-
Goff, S.A.1
Ricke, D.2
Lan, T.H.3
-
7
-
-
0033083072
-
Comparative genomics: The key to understanding the Human Genome Project
-
Clark MS. Comparative genomics: The key to understanding the Human Genome Project. Bioessays 1999;21:121-30.
-
(1999)
Bioessays
, vol.21
, pp. 121-130
-
-
Clark, M.S.1
-
8
-
-
0033569387
-
The promise of comparative genomics in mammals
-
O'Brien SJ, Menotti-Raymond M, Murphy WJ, et al. The promise of comparative genomics in mammals. Science 1999;286:458-62, 479-481.
-
(1999)
Science
, vol.286
, pp. 458-462
-
-
O'Brien, S.J.1
Menotti-Raymond, M.2
Murphy, W.J.3
-
9
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990;215:403-10.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
10
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, et al. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
-
11
-
-
0033861549
-
Human and mouse gene structure: Comparative analysis and application to exon prediction
-
Batzoglou S, Pachter L, Mesirov JP, Berger B, Lander ES. Human and mouse gene structure: Comparative analysis and application to exon prediction. Genome Res 2000;10:950-8.
-
(2000)
Genome Res
, vol.10
, pp. 950-958
-
-
Batzoglou, S.1
Pachter, L.2
Mesirov, J.P.3
Berger, B.4
Lander, E.S.5
-
13
-
-
0033153375
-
Alignment of whole genomes
-
Delcher AL, Kasif S, Fleischmann RD, Peterson J, White O, Salzberg SL. Alignment of whole genomes. Nucleic Acids Res 1999;27:2369-76.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 2369-2376
-
-
Delcher, A.L.1
Kasif, S.2
Fleischmann, R.D.3
Peterson, J.4
White, O.5
Salzberg, S.L.6
-
14
-
-
0034020416
-
PipMaker - A web server for aligning two genomic DNA sequences
-
Schwartz S, Zhang Z, Frazer KA, et al. PipMaker - A web server for aligning two genomic DNA sequences. Genome Res 2000;10:577-86.
-
(2000)
Genome Res
, vol.10
, pp. 577-586
-
-
Schwartz, S.1
Zhang, Z.2
Frazer, K.A.3
-
15
-
-
0034518158
-
VISTA: Visualizing global DNA sequence alignments of arbitrary length
-
Mayor C, Brudno M, Schwartz JR, et al. VISTA: Visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 2000;16:1046-7.
-
(2000)
Bioinformatics
, vol.16
, pp. 1046-1047
-
-
Mayor, C.1
Brudno, M.2
Schwartz, J.R.3
-
16
-
-
0033832676
-
Conservation, regulation, synteny, and introns in a large-scale C. briggsae - C. elegans genomic alignment
-
Kent WJ, Zahler AM. Conservation, regulation, synteny, and introns in a large-scale C. briggsae - C. elegans genomic alignment. Genome Res 2000;10:1115-25.
-
(2000)
Genome Res
, vol.10
, pp. 1115-1125
-
-
Kent, W.J.1
Zahler, A.M.2
-
17
-
-
0036202921
-
Pattern Hunter: Faster and more sensitive homology search
-
Ma B, Tromp J, Li M. Pattern Hunter: Faster and more sensitive homology search. Bioinformatics 2002;18:440-5.
-
(2002)
Bioinformatics
, vol.18
, pp. 440-445
-
-
Ma, B.1
Tromp, J.2
Li, M.3
-
18
-
-
0036518814
-
The computational challenges of applying comparative-based computational methods to whole genomes
-
Dubchak I, Pachter L. The computational challenges of applying comparative-based computational methods to whole genomes. Brief Bioinform 2002;3:18-22.
-
(2002)
Brief Bioinform
, vol.3
, pp. 18-22
-
-
Dubchak, I.1
Pachter, L.2
-
19
-
-
0035011227
-
Comparison of genomic DNA sequences: Solved and unsolved problems
-
Miller W. Comparison of genomic DNA sequences: Solved and unsolved problems. Bioinformatics 2001;17:391-7.
-
(2001)
Bioinformatics
, vol.17
, pp. 391-397
-
-
Miller, W.1
-
20
-
-
0034329429
-
Genome sequence comparisons: Hurdles in the fast lane to functional genomics
-
Wiehe T, Guigo R, Miller W. Genome sequence comparisons: Hurdles in the fast lane to functional genomics. Brief Bioinform 2000;1:381-8.
-
(2000)
Brief Bioinform
, vol.1
, pp. 381-388
-
-
Wiehe, T.1
Guigo, R.2
Miller, W.3
-
21
-
-
0034919548
-
Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis
-
Cliften PF, Hillier LW, Fulton L, et al. Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis. Genome Res 2001;11:1175-86.
-
(2001)
Genome Res
, vol.11
, pp. 1175-1186
-
-
Cliften, P.F.1
Hillier, L.W.2
Fulton, L.3
-
22
-
-
6644225936
-
Human chromosome 19 and related regions in mouse: Conservative and lineage-specific evolution
-
Dehal P, Predki P, Olsen AS, et al. Human chromosome 19 and related regions in mouse: Conservative and lineage-specific evolution. Science 2001;293:104-11.
-
(2001)
Science
, vol.293
, pp. 104-111
-
-
Dehal, P.1
Predki, P.2
Olsen, A.S.3
-
23
-
-
0035924324
-
The DNA sequence and comparative analysis of human chromosome 20
-
Deloukas P, Matthews LH, Ashurst J, et al. The DNA sequence and comparative analysis of human chromosome 20. Nature 2001;414:865-71.
-
(2001)
Nature
, vol.414
, pp. 865-871
-
-
Deloukas, P.1
Matthews, L.H.2
Ashurst, J.3
-
24
-
-
0034762015
-
Evolutionarily conserved sequences on human chromosome 21
-
Frazer KA, Sheehan JB, Stokowski RP, et al. Evolutionarily conserved sequences on human chromosome 21. Genome Res 2001;11:1651-9.
-
(2001)
Genome Res
, vol.11
, pp. 1651-1659
-
-
Frazer, K.A.1
Sheehan, J.B.2
Stokowski, R.P.3
-
25
-
-
0037204994
-
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome
-
Mural RJ, Adams MD, Myers EW, et al. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science 2002;296:1661-71.
-
(2002)
Science
, vol.296
, pp. 1661-1671
-
-
Mural, R.J.1
Adams, M.D.2
Myers, E.W.3
-
26
-
-
0033552961
-
Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
-
Alm RA, Ling LS, Moir DT, et al. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 1999;397:176-80.
-
(1999)
Nature
, vol.397
, pp. 176-180
-
-
Alm, R.A.1
Ling, L.S.2
Moir, D.T.3
-
27
-
-
0033529862
-
Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA
-
Campbell A, Mrazek J, Karlin S. Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA. Proc Natl Acad Sci USA 1999;96:9184-9.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 9184-9189
-
-
Campbell, A.1
Mrazek, J.2
Karlin, S.3
-
28
-
-
0036606406
-
Synteny between Arabidopsis thaliana and rice at the genome level: A tool to identify conservation in the ongoing rice genome sequencing project
-
Salse J, Piegu B, Cooke R, Delseny M. Synteny between Arabidopsis thaliana and rice at the genome level: A tool to identify conservation in the ongoing rice genome sequencing project. Nucleic Acids Res 2002;30:2316-28.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2316-2328
-
-
Salse, J.1
Piegu, B.2
Cooke, R.3
Delseny, M.4
-
29
-
-
0036073174
-
Comparative sequence analysis of the x-inactivation center region in mouse, human, and bovine
-
Chureau C, Prissette M, Bourdet A, et al. Comparative sequence analysis of the x-inactivation center region in mouse, human, and bovine. Genome Res 2002;12:894-908.
-
(2002)
Genome Res
, vol.12
, pp. 894-908
-
-
Chureau, C.1
Prissette, M.2
Bourdet, A.3
-
30
-
-
14344273992
-
Prevalence of small inversions in yeast gene order evolution
-
Seoighe C, Federspiel N, Jones T, et al. Prevalence of small inversions in yeast gene order evolution. Proc Natl Acad Sci USA 2000;97:14433-7.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 14433-14437
-
-
Seoighe, C.1
Federspiel, N.2
Jones, T.3
-
31
-
-
0030811859
-
Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium
-
Himmelreich R, Plagens H, Hilbert H, Reiner B, Herrmann R. Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium. Nucleic Acids Res 1997;25:701-12.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 701-712
-
-
Himmelreich, R.1
Plagens, H.2
Hilbert, H.3
Reiner, B.4
Herrmann, R.5
-
32
-
-
0030111235
-
Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli
-
Tatusov RL, Mushegian AR, Bork P, et al. Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli. Curr Biol 1996;6:279-91.
-
(1996)
Curr Biol
, vol.6
, pp. 279-291
-
-
Tatusov, R.L.1
Mushegian, A.R.2
Bork, P.3
-
33
-
-
0035058359
-
Evolution of prokaryotic gene order: Genome rearrangements in closely related species
-
Suyama M, Bork P. Evolution of prokaryotic gene order: Genome rearrangements in closely related species. Trends Genet 2001;17:10-3.
-
(2001)
Trends Genet
, vol.17
, pp. 10-13
-
-
Suyama, M.1
Bork, P.2
-
34
-
-
0036211065
-
GRIMM: Genome rearrangements web server
-
Tesler G. GRIMM: Genome rearrangements web server. Bioinformatics 2002;18:492-3.
-
(2002)
Bioinformatics
, vol.18
, pp. 492-493
-
-
Tesler, G.1
-
35
-
-
0030870076
-
EST_GENOME: A program to align spliced DNA sequences to unspliced genomic DNA
-
Mott R. EST_GENOME: A program to align spliced DNA sequences to unspliced genomic DNA. Comput Appl Biosci 1997;13:477-8.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 477-478
-
-
Mott, R.1
-
36
-
-
2642630755
-
Analysis of EST-driven gene annotation in human genomic sequence
-
Bailey Jr LC, Searls DB, Overton GC. Analysis of EST-driven gene annotation in human genomic sequence. Genome Res 1998;8:362-76.
-
(1998)
Genome Res
, vol.8
, pp. 362-376
-
-
Bailey L.C., Jr.1
Searls, D.B.2
Overton, G.C.3
-
37
-
-
0031732094
-
A computer program for aligning a cDNA sequence with a genomic DNA sequence
-
Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res 1998;8:967-74.
-
(1998)
Genome Res
, vol.8
, pp. 967-974
-
-
Florea, L.1
Hartzell, G.2
Zhang, Z.3
Rubin, G.M.4
Miller, W.5
-
38
-
-
0029897488
-
PairWise and SearchWise: Finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames
-
Birney E, Thompson JD, Gibson TJ. PairWise and SearchWise: Finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames. Nucleic Acids Res 1996;24:2730-9.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 2730-2739
-
-
Birney, E.1
Thompson, J.D.2
Gibson, T.J.3
-
39
-
-
0035177648
-
Gene recognition in eukaryotic DNA by comparison of genomic sequences
-
Novichkov PS, Gelfand MS, Mironov AA. Gene recognition in eukaryotic DNA by comparison of genomic sequences. Bioinformatics 2001;17:1011-8.
-
(2001)
Bioinformatics
, vol.17
, pp. 1011-1018
-
-
Novichkov, P.S.1
Gelfand, M.S.2
Mironov, A.A.3
-
41
-
-
0030623944
-
Two methods for improving performance of an HMM and their application for gene finding
-
Krogh A. Two methods for improving performance of an HMM and their application for gene finding. Proc Int Conf Intell Syst Mol Biol 1997;5:179-86.
-
(1997)
Proc Int Conf Intell Syst Mol Biol
, vol.5
, pp. 179-186
-
-
Krogh, A.1
-
42
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
Burge C, Karlin S. Prediction of complete gene structures in human genomic DNA. J Mol Biol 1997;268:78-94.
-
(1997)
J Mol Biol
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
44
-
-
0032519353
-
GeneMark.hmm: New solutions for gene finding
-
Lukashin AV, Borodovsky M. GeneMark.hmm: New solutions for gene finding. Nucleic Acids Res 1998;26:1107-15.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
45
-
-
0028696343
-
Characteristic features of the nucleotide sequences of yeast mitochondrial ribosomal protein genes as analyzed by computer program GeneMark
-
Isono K, McIninch JD, Borodovsky M. Characteristic features of the nucleotide sequences of yeast mitochondrial ribosomal protein genes as analyzed by computer program GeneMark. DNA Res 1994;1:263-9.
-
(1994)
DNA Res
, vol.1
, pp. 263-269
-
-
Isono, K.1
McIninch, J.D.2
Borodovsky, M.3
-
46
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. Improved microbial gene identification with GLIMMER. Nucleic Acids Res 1999;27:4636-41.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
48
-
-
17444437765
-
Integrating genomic homology into gene structure prediction
-
Korf I, Flicek P, Duan D, Brent MR. Integrating genomic homology into gene structure prediction. Bioinformatics 2001; 17(Suppl 1):S140-8.
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL. 1
-
-
Korf, I.1
Flicek, P.2
Duan, D.3
Brent, M.R.4
-
49
-
-
0034832202
-
SGP-1: Prediction and validation of homologous genes based on sequence alignments
-
Wiehe T, Gebauer-Jung S, Mitchell-Olds T, Guigo R. SGP-1: Prediction and validation of homologous genes based on sequence alignments. Genome Res 2001;11:1574-83.
-
(2001)
Genome Res
, vol.11
, pp. 1574-1583
-
-
Wiehe, T.1
Gebauer-Jung, S.2
Mitchell-Olds, T.3
Guigo, R.4
-
50
-
-
0036739126
-
UniBlast: A system to filter, cluster, and display BLAST results and assign unique gene annotation
-
Zhou Y, Huang GM, Wei L. UniBlast: A system to filter, cluster, and display BLAST results and assign unique gene annotation. Bioinformatics 2002;18(9):1268-9.
-
(2002)
Bioinformatics
, vol.18
, Issue.9
, pp. 1268-1269
-
-
Zhou, Y.1
Huang, G.M.2
Wei, L.3
-
51
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000;28:27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
52
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, et al. Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000;25:25-9.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
-
53
-
-
0035956977
-
Comparative genomics of the restriction-modification systems in Helicobacter pylori
-
Lin LF, Posfai J, Roberts RJ, Kong H. Comparative genomics of the restriction-modification systems in Helicobacter pylori. Proc Natl Acad Sci USA 2001;98:2740-5.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 2740-2745
-
-
Lin, L.F.1
Posfai, J.2
Roberts, R.J.3
Kong, H.4
-
54
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
-
Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO. Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles. Proc Natl Acad Sci USA 1999;96:4285-8.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
55
-
-
0033055062
-
The use of gene clusters to infer functional coupling
-
Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N. The use of gene clusters to infer functional coupling. Proc Natl Acad Sci USA 1999;96:2896-901.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 2896-2901
-
-
Overbeek, R.1
Fonstein, M.2
D'Souza, M.3
Pusch, G.D.4
Maltsev, N.5
-
56
-
-
0035085816
-
Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context
-
Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. Genome Res 2001;11:356-72.
-
(2001)
Genome Res
, vol.11
, pp. 356-372
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Kondrashov, A.S.3
Koonin, E.V.4
-
57
-
-
0033618555
-
Detecting protein function and protein-protein interactions from genome sequences
-
Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D. Detecting protein function and protein-protein interactions from genome sequences. Science 1999;285:751-3.
-
(1999)
Science
, vol.285
, pp. 751-753
-
-
Marcotte, E.M.1
Pellegrini, M.2
Ng, H.L.3
Rice, D.W.4
Yeates, T.O.5
Eisenberg, D.6
-
58
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright AJ, Iliopoulos I, Kyrpides NC, Ouzounis CA. Protein interaction maps for complete genomes based on gene fusion events. Nature 1999;402:86-90.
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
Iliopoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
59
-
-
0034284481
-
Conserved noncoding sequences are reliable guides to regulatory elements
-
Hardison RC. Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet 2000;16:369-72.
-
(2000)
Trends Genet
, vol.16
, pp. 369-372
-
-
Hardison, R.C.1
-
60
-
-
0034763055
-
Evolutionarily conserved noncoding DNA in the human genome: How much and what for?
-
Meisler MH. Evolutionarily conserved noncoding DNA in the human genome: How much and what for? Genome Res 2001;11:1617-8.
-
(2001)
Genome Res
, vol.11
, pp. 1617-1618
-
-
Meisler, M.H.1
-
61
-
-
0035261381
-
Genomic strategies to identify mammalian regulatory sequences
-
Pennacchio LA, Rubin EM. Genomic strategies to identify mammalian regulatory sequences. Nat Rev Genet 2001;2:100-9.
-
(2001)
Nat Rev Genet
, vol.2
, pp. 100-109
-
-
Pennacchio, L.A.1
Rubin, E.M.2
-
62
-
-
0033775978
-
Human-mouse genome comparisons to locate regulatory sites
-
Wasserman WW, Palumbo M, Thompson W, Fickett JW, Lawrence CE. Human-mouse genome comparisons to locate regulatory sites. Nat Genet 2000;26:225-8.
-
(2000)
Nat Genet
, vol.26
, pp. 225-228
-
-
Wasserman, W.W.1
Palumbo, M.2
Thompson, W.3
Fickett, J.W.4
Lawrence, C.E.5
-
63
-
-
0030722935
-
Long human-mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome
-
Hardison RC, Oeltjen J, Miller W. Long human-mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome. Genome Res 1997;7:959-66.
-
(1997)
Genome Res
, vol.7
, pp. 959-966
-
-
Hardison, R.C.1
Oeltjen, J.2
Miller, W.3
-
64
-
-
0034616398
-
Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
-
Loots GG, Locksley RM, Blankespoor CM, et al. Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science 2000;288:136-40.
-
(2000)
Science
, vol.288
, pp. 136-140
-
-
Loots, G.G.1
Locksley, R.M.2
Blankespoor, C.M.3
-
65
-
-
0033972132
-
Analysis of vertebrate SCL loci identifies conserved enhancers
-
Gottgens B, Barton LM, Gilbert JG, et al. Analysis of vertebrate SCL loci identifies conserved enhancers. Nat Biotechnol 2000;18:181-6.
-
(2000)
Nat Biotechnol
, vol.18
, pp. 181-186
-
-
Gottgens, B.1
Barton, L.M.2
Gilbert, J.G.3
-
66
-
-
0035154384
-
Long-range comparison of human and mouse SCL loci: Localized regions of sensitivity to restriction endonucleases correspond precisely with peaks of conserved noncoding sequences
-
Gottgens B, Gilbert JG, Barton LM, et al. Long-range comparison of human and mouse SCL loci: Localized regions of sensitivity to restriction endonucleases correspond precisely with peaks of conserved noncoding sequences. Genome Res 2001;11:87-97.
-
(2001)
Genome Res
, vol.11
, pp. 87-97
-
-
Gottgens, B.1
Gilbert, J.G.2
Barton, L.M.3
-
67
-
-
12944268995
-
Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes
-
Ellsworth RE, Jamison DC, Touchman JW, et al. Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes. Proc Natl Acad Sci USA 2000;97:1172-7.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 1172-1177
-
-
Ellsworth, R.E.1
Jamison, D.C.2
Touchman, J.W.3
-
68
-
-
0034143652
-
Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2
-
Lund J, Chen F, Hua A, et al. Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2. Genomics 2000;63:374-83.
-
(2000)
Genomics
, vol.63
, pp. 374-383
-
-
Lund, J.1
Chen, F.2
Hua, A.3
-
69
-
-
0034612229
-
Identification of phylogenetic footprints in primate tumor necrosis factor-alpha promoters
-
Leung JY, McKenzie FE, Uglialoro AM, et al. Identification of phylogenetic footprints in primate tumor necrosis factor-alpha promoters. Proc Natl Acad Sci USA 2000;97:6614-8.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 6614-6618
-
-
Leung, J.Y.1
McKenzie, F.E.2
Uglialoro, A.M.3
-
70
-
-
0032884653
-
Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs
-
Jareborg N, Birney E, Durbin R. Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs. Genome Res 1999;9:815-24.
-
(1999)
Genome Res
, vol.9
, pp. 815-824
-
-
Jareborg, N.1
Birney, E.2
Durbin, R.3
-
71
-
-
17744391752
-
Comparative DNA sequence analysis of mouse and human protocadherin gene clusters
-
Wu Q, Zhang T, Cheng JF, et al. Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. Genome Res 2001;11:389-404.
-
(2001)
Genome Res
, vol.11
, pp. 389-404
-
-
Wu, Q.1
Zhang, T.2
Cheng, J.F.3
-
72
-
-
0034783060
-
Enrichment of regulatory signals in conserved non-coding genomic sequence
-
Levy S, Hannenhalli S, Workman C. Enrichment of regulatory signals in conserved non-coding genomic sequence. Bioinformatics 2001;17:871-7.
-
(2001)
Bioinformatics
, vol.17
, pp. 871-877
-
-
Levy, S.1
Hannenhalli, S.2
Workman, C.3
-
73
-
-
0033799618
-
Active conservation of noncoding sequences revealed by three-way species comparisons
-
Dubchak I, Brudno M, Loots GG, et al. Active conservation of noncoding sequences revealed by three-way species comparisons. Genome Res 2000;10:1304-6.
-
(2000)
Genome Res
, vol.10
, pp. 1304-1306
-
-
Dubchak, I.1
Brudno, M.2
Loots, G.G.3
-
74
-
-
0035878391
-
The sheep genome contributes to localization of control elements in a human gene with complex regulatory mechanisms
-
Mouchel N, Tebbutt SJ, Broackes-Carter FC, et al. The sheep genome contributes to localization of control elements in a human gene with complex regulatory mechanisms. Genomics 2001;76:9-13.
-
(2001)
Genomics
, vol.76
, pp. 9-13
-
-
Mouchel, N.1
Tebbutt, S.J.2
Broackes-Carter, F.C.3
-
75
-
-
0036105591
-
For comparative sequence-based discovery of functional transcription factor binding sites
-
Loots GG, Ovcharenko I, Pachter L, Dubchak I, Rubin EM. For comparative sequence-based discovery of functional transcription factor binding sites. Genome Res 2002;12:832-9.
-
(2002)
Genome Res
, vol.12
, pp. 832-839
-
-
Loots, G.G.1
Ovcharenko, I.2
Pachter, L.3
Dubchak, I.4
Rubin, E.M.5
-
76
-
-
0028306521
-
Comparative chromosome painting discloses homologous segments in distantly related mammals
-
Scherthan H, Cremer T, Arnason U, Weier HU, Lima-de-Faria A, Fronicke L. Comparative chromosome painting discloses homologous segments in distantly related mammals. Nat Genet 1994;6:342-7.
-
(1994)
Nat Genet
, vol.6
, pp. 342-347
-
-
Scherthan, H.1
Cremer, T.2
Arnason, U.3
Weier, H.U.4
Lima-de-Faria, A.5
Fronicke, L.6
-
77
-
-
0003157183
-
Noncoding RNA gene detection using comparative sequence analysis
-
Rivas E, Eddy SR. Noncoding RNA gene detection using comparative sequence analysis. BMC Bioinform 2001;2:8.
-
(2001)
BMC Bioinform
, vol.2
, pp. 8
-
-
Rivas, E.1
Eddy, S.R.2
-
78
-
-
0035806973
-
Computational identification of noncoding RNAs in E. coli by comparative genomics
-
Rivas E, Klein RJ, Jones TA, Eddy SR. Computational identification of noncoding RNAs in E. coli by comparative genomics. Curr Biol 2001;11:1369-73.
-
(2001)
Curr Biol
, vol.11
, pp. 1369-1373
-
-
Rivas, E.1
Klein, R.J.2
Jones, T.A.3
Eddy, S.R.4
-
79
-
-
0036073165
-
Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes
-
Zeeberg B. Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes. Genome Res 2002;12(6):944-55.
-
(2002)
Genome Res
, vol.12
, Issue.6
, pp. 944-955
-
-
Zeeberg, B.1
|