Transcriptional termination modulated by nucleotides outside the characterized gene end sequence of respiratory syncytial virus

Virology

Volumn 300, Issue 2, 2002, Pages 304-315

  Harmon, Shawn B ^a   Wertz, Gail W ^a  

^a University of Alabama at Birmingham   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; NUCLEOTIDE; RNA POLYMERASE; VIRUS RNA;

ARTICLE; CONTROLLED STUDY; GENE EXPRESSION REGULATION; GENE SEQUENCE; GENETIC ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYADENYLATION; PRIORITY JOURNAL; PROMOTER REGION; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; RNA SEQUENCE; TRANSCRIPTION INITIATION; TRANSCRIPTION TERMINATION; VIRUS GENE;

RESPIRATORY SYNCYTIAL VIRUS;

EID: 0036390013     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2002.1541     Document Type: Article

References (54)

1. Barik, S. (1992). Transcription of human respiratory syncytial virus genome RNA in vitro: Requirement of cellular factor(s). J. Virol. 66(11), 6813-6818.
2. Barr, J. N., and Wertz, G. W. (2001). Polymerase slippage at vesicular stomatitis virus gene junctions to generate poly(A) is regulated by the upstream 3′-AUAC-5′ tetranucleotide: Implications for the mechanism of transcription termination. J. Virol. 75(15), 6901-6913.
3. Barr, J. N., Whelan, S. P., and Wertz, G. W. (1997a). cis-Acting signals involved in termination of vesicular stomatitis virus mRNA synthesis include the conserved AUAC and the U7 signal for polyadenylation. J. Virol. 71(11), 8718-8725.
4. Barr, J. N., Whelan, S. P., and Wertz, G. W. (1997b). Role of the intergenic dinucleotide in vesicular stomatitis virus RNA transcription. J. Virol. 71(3), 1794-1801.
5. Bukreyev, A., Camargo, E., and Collins, P. L. (1996). Recovery of infectious respiratory syncytial virus expressing an additional, foreign gene. J. Virol. 70(10), 6634-6641.
6. Bukreyev, A., Murphy, B. R., and Collins, P. L. (2000). Respiratory syncytial virus can tolerate an intergenic sequence of at least 160 nucleotides with little effect on transcription or replication in vitro and in vivo. J. Virol. 74(23), 11017-11026.
7. Bukreyev, A., Whitehead, S. S., Bukreyeva, N., Murphy, B. R., and Collins, P. L. (1999). Interferon gamma expressed by a recombinant respiratory syncytial virus attenuates virus replication in mice without compromising immunogenicity. Proc. Natl. Acad. Sci. USA 96(5), 2367-2372.
8. Cartee, T. L., and Wertz, G. W. (2001). Respiratory syncytial virus M2-1 protein requires phosphorylation for efficient function and binds viral RNA during infection. J. Virol. 75(24), 12188-12197.
9. Cattaneo, R., Schmid, A., Rebmann, G., Baczko, K., Ter Meulen, V., Bellini, W. J., Rozenblatt, S., and Billeter, M. A. (1986). Accumulated measles virus mutations in a case of subacute sclerosing panencephalitis: interrupted matrix protein reading frame and transcription alteration. Virology 154(1), 97-107.
10. Chen, T. R. (1988). Re-evaluation of HeLa, HeLa S3, and HEp-2 karyotypes. Cytogenet. Cell Genet. 48(1), 19-24.
11. Coggins, W. B., Lefkowitz, E. J., and Sullender, W. M. (1998). Genetic variability among group A and group B respiratory syncytial viruses in a children's hospital. J. Clin. Microbiol. 36(12), 3552-3557.
12. Collins, P. L., Chanock, R. M., and Murphy, B. R. (2001). Respiratory syncytial virus. In "Fields Virology" (D. M. Knipe, P. M. Howley, D. E. Griffin, et al., Eds.), Vol. 1, 4th ed., pp. 1443-1485. 2 vols. Lippincott Williams & Wilkins, Philadelphia.
13. Collins, P. L., Dickens, L. E., Buckler-White, A., Olmsted, R. A., Spriggs, M. K., Camargo, E., and Coelingh, K. V. (1986). Nucleotide sequences for the gene junctions of human respiratory syncytial virus reveal distinctive features of intergenic structure and gene order. Proc. Natl. Acad. Sci. USA 83(13), 4594-4598.
14. Collins, P. L., Hill, M. G., Cristina, J., and Grosfeld, H. (1996). Transcription elongation factor of respiratory syncytial virus, a nonsegmented negative-strand RNA virus. Proc. Natl. Acad. Sci. USA 93(1), 81-85.
15. Collins, P. L., and Wertz, G. W. (1983). cDNA cloning and transcriptional mapping of nine polyadenylylated RNAs encoded by the genome of human respiratory syncytial virus. Proc. Natl. Acad. Sci. USA 80(11), 3208-3212.
16. Dickens, L. E. (1985). Ph.D. thesis, University of North Carolina at Chapel Hill, Chapel Hill, NC.
17. Dickens, L. E., Collins, P. L., and Wertz, G. W. (1984). Transcriptional mapping of human respiratory syncytial virus. J. Virol. 52(2), 364-369.
18. Emerson, S. U. (1987). Transcription of vesicular stomatitis virus. In "The Rhabdoviruses" (R. R. Wagner, Ed.), pp. 245-269. Plenum, New York.
19. Fearns, R., and Collins, P. L. (1999). Role of the M2-1 transcription antitermination protein of respiratory syncytial virus in sequential transcription. J. Virol. 73(7), 5852-5864.
20. Fearns, R., Collins, P. L., and Peeples, M. E. (2000). Functional analysis of the genomic and antigenomic promoters of human respiratory syncytial virus. J. Virol. 74(13), 6006-6014.
21. Fearns, R., Peeples, M. E., and Collins, P. L. (2002). Mapping the transcription and replication promoters of respiratory syncytial virus. J. Virol. 76(4), 1663-1672.
22. Han, X., and Turnbough, C. L., Jr. (1998). Regulation of carAB expression in Escherichia coli occurs in part through UTP-sensitive reiterative transcription. J. Bacteriol. 180(3), 705-713.
23. Hardy, R. W., Harmon, S. B., and Wertz, G. W. (1999). Diverse gene junctions of respiratory syncytial virus modulate the efficiency of transcription termination and respond differently to M2-mediated antitermination. J. Virol. 73(1), 170-176.
24. Hardy, R. W., and Wertz, G. W. (1998). The product of the respiratory syncytial virus M2 gene ORF1 enhances readthrough of intergenic junctions during viral transcription. J. Virol. 72(1), 520-526.
25. Hardy, R. W., and Wertz, G. W. (2000). The Cys(3)-His(1) motif of the respiratory syncytial virus M2-1 protein is essential for protein function. J. Virol. 74(13), 5880-5885.
26. Harmon, S. B. (2002). Ph.D. thesis. University of Alabama at Birmingham, Birmingham, AL.
27. Harmon, S. B., Megaw, A. G., and Wertz, G. W. (2001). RNA sequences involved in transcriptional termination of respiratory syncytial virus. J. Virol. 75(1), 36-44.
28. Hummel, K. B., Vanchiere, J. A., and Bellini, W. J. (1994). Restriction of fusion protein mRNA as a mechanism of measles virus persistence. Virology 202(2), 665-672.
29. Hwang, L. N., Englund, N., and Pattnaik, A. K. (1998). Polyadenylation of vesicular stomatitis virus mRNA dictates efficient transcription termination at the intercistronic gene junctions. J. Virol. 72(3), 1805-1813.
30. Iverson, L. E., and Rose, J. K. (1981). Localized attenuation and discontinuous synthesis during vesicular stomatitis virus transcription. Cell 23(2), 477-484.
31. Johnson, P. R., and Collins, P. L. (1988). The A and B subgroups of human respiratory syncytial virus: comparison of intergenic and gene-overlap sequences. J. Gen. Virol. 69(Pt. 11), 2901-2906.
32. Kireeva, M. L., Komissarova, N., Waugh, D. S., and Kashlev, M. (2000). The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex. J. Biol. Chem. 275(9), 6530-6536.
33. Kolakofsky, D., Pelet, T., Garcin, D., Hausmann, S., Curran, J., and Roux, L. (1998). Paramyxovirus RNA synthesis and the requirement for hexamer genome length: The rule of six revisited. J. Virol. 72(2), 891-899.
34. Korzheva, N., and Mustaev, A. (2001). Transcription elongation complex: Structure and function. Curr. Opin. Microbiol. 4(2), 119-125.
35. Kuo, L., Fearns, R., and Collins, P. L. (1996). The structurally diverse intergenic regions of respiratory syncytial virus do not modulate sequential transcription by a dicistronic minigenome. J. Virol. 70(9), 6143-6150.
36. Kuo, L., Fearns, R., and Collins, P. L. (1997). Analysis of the gene start and gene end signals of human respiratory syncytial virus: Quasitemplated initiation at position 1 of the encoded mRNA. J. Virol. 71(7), 4944-4953.
37. Kuo, L., Grosfeld, H., Cristina, J., Hill, M. G., and Collins, P. L. (1996). Effects of mutations in the gene-start and gene-end sequence motifs on transcription of monocistronic and dicistronic minigenomes of respiratory syncytial virus. J. Virol. 70(10), 6892-6901.
38. Lamb, R. A., and Kolakofsky, D. (1996). Paramyxoviridae: The viruses and their replication. In "Fields Virology" (B. N. Fields, D. M. Knipe, and P. M. Howley, Eds.), Vol. 1, 3rd ed., pp. 1177-1204. 2 vols. Lippincott-Raven, Philadelphia.
39. Liu, C., Heath, L. S., and Turnbough, C. L., Jr. (1994). Regulation of pyrBI operon expression in Escherichia coli by UTP-sensitive reiterative RNA synthesis during transcriptional initiation. Genes Dev. 8(23), 2904-2912.
40. Nudler, E., Mustaev, A., Lukhtanov, E., and Goldfarb, A. (1997). The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase. Cell 89(1), 33-41.
41. Parks, G. D., Ward, K. R., and Rassa, J. C. (2001). Increased readthrough transcription across the simian virus 5 M-F gene junction leads to growth defects and a global inhibition of viral mRNA synthesis. J. Virol. 75(5), 2213-2223.
42. Quinones-Kochs, M. I., Schnell, M. J., Buonocore, L., and Rose, J. K. (2001). Mechanisms of loss of foreign gene expression in recombinant vesicular stomatitis viruses. Virology 287(2), 427-435.
43. Rassa, J. C., and Parks, G. D. (1998). Molecular basis for naturally occurring elevated readthrough transcription across the M-F junction of the paramyxovirus SV5. Virology 247(2), 274-286.
44. Rassa, J. C., and Parks, G. D. (1999). Highly diverse intergenic regions of the paramyxovirus simian virus 5 cooperate with the gene end U tract in viral transcription termination and can influence reinitiation at a downstream gene. J. Virol. 73(5), 3904-3912.
45. Rassa, J. C., Wilson, G. M., Brewer, G. A., and Parks, G. D. (2000). Spacing constraints on reinitiation of paramyxovirus transcription: the gene end U tract acts as a spacer to separate gene end from gene start sites. Virology 274(2), 438-449.
46. Sambrook, J., and Russell, D. (2001). "Molecular Cloning - A Laboratory Manual." 3rd ed. Cold Spring Harbor Press, Cold Spring Harbor, NY.
47. Sidorenkov, I., Komissarova, N., and Kashlev, M. (1998). Crucial role of the RNA:DNA hybrid in the processivity of transcription. Mol. Cell 2(1), 55-64.
48. Stillman, E. A., and Whitt, M. A. (1997). Mutational analyses of the intergenic dinucleotide and the transcriptional start sequence of vesicular stomatitis virus (VSV) define sequences required for efficient termination and initiation of VSV transcripts. J. Virol. 71(3), 2127-2137.
49. Stillman, E. A., and Whitt, M. A. (1999). Transcript initiation and 5′-end modifications are separable events during vesicular stomatitis virus transcription. J. Virol. 73(9), 7199-7209.
50. Sutherland, K. A., Collins, P. L., and Peeples, M. E. (2001). Synergistic effects of gene-end signal mutations and the M2-1 protein on transcription termination by respiratory syncytial virus. Virology 288(2), 295-307.
51. Tu, A. H., and Turnbough, C. L., Jr. (1997). Regulation of upp expression in Escherichia coli by UTP-sensitive selection of transcriptional start sites coupled with UTP-dependent reiterative transcription. J. Bacteriol. 179(21), 6665-6673.
52. Wertz, G. W., Moudy, R., and Ball, L. A. (2002). Adding genes to the RNA genome of vesicular stomatitis virus: Positional effects on stability of expression. J. Virol. 76(15), 7642-7650.
53. Wyatt, L. S., Moss, B., and Rozenblatt, S. (1995). Replication-deficient vaccinia virus encoding bacteriophage T7 RNA polymerase for transient gene expression in mammalian cells. Virology 210(1), 202-205.
54. Zamora, M., and Samal, S. K. (1992). Gene junction sequences of bovine respiratory syncytial virus. Virus Res. 24(1), 115-121.