Fold recognition without folds

Protein Science

Volumn 11, Issue 6, 2002, Pages 1575-1579

  Koretke, Kristin K ^a,c   Russell, Robert B ^b   Lupas, Andrei N ^a  

^a GLAXOSMITHKLINE   (United States)

^b GLAXOSMITHKLINE   (United Kingdom)

^c UP1345 ^*  (United States)

Author keywords

Fold recognition; HMMer; PSI BLAST; SENSER; Sequence similarity; Structure prediction

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; PROTEIN TERTIARY STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; TECHNIQUE; ALGORITHM; ANIMAL; CHEMISTRY; EVALUATION; GENETICS; HUMAN; PROTEIN DATABASE; SEQUENCE ALIGNMENT;

PROTEIN;

ALGORITHMS; AMINO ACID SEQUENCE; ANIMALS; DATABASES, PROTEIN; HUMANS; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; PROTEINS; SEQUENCE ALIGNMENT;

EID: 0036111244     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.3590102     Document Type: Article

References (25)

1. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
2. The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple βαββ element
3. Profile hidden Markov models
4. Assessing the performance of fold recognition methods by means of a comprehensive benchmark
5. A sequence property approach to searching protein databases
6. An evolutionary treasure: Unification of a broad set of aminohydrolases related to urease
7. Homology-based fold predictions for Mycoplasma genitalium proteins
8. GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
9. Predicting protein structure using only sequence information
10. Hidden Markov models for detecting remote protein homologies
11. Fold recognition using sequence and secondary structure information
12. Hidden Markov models in computational biology. Applications to protein modeling
13. Prediction and analysis of coiled-coil structures
14. Critical assessment of methods of protein structure prediction (CASP): Round III
15. Extracting protein alignment models from the sequence database
16. Threading with explicit models for evolutionary conservation of structure and sequence
17. Intermediate sequences increase the detection of homology between sequences
18. Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods
19. Protein fold recognition by prediction based threading
20. The genome sequence of the thermoacidophilic scavenger Thermo-plasma acidophilum
21. Multiple protein sequence alignment from tertiary structure comparison: Assignment of global and residue confidence levels
22. Protein fold recognition by mapping predicted secondary structures
23. The calculation of conformational ensembles from potentials of mean force. An approach to the knowledge based prediction of local structures in globular proteins
24. Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements
25. Analysis of compositionally biased regions in sequence databases