메뉴 건너뛰기




Volumn 37, Issue SUPPL. 3, 1999, Pages 133-140

Threading with explicit models for evolutionary conservation of structure and sequence

Author keywords

Protein evolution; Protein threading; Structure prediction

Indexed keywords

PROTEIN; CARBAMOYL PHOSPHATE SYNTHASE; LYASE; METHYLGLYOXAL SYNTHETASE;

EID: 0032613429     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0134(1999)37:3+<133::AID-PROT18>3.0.CO;2-D     Document Type: Article
Times cited : (59)

References (30)
  • 2
    • 0031303337 scopus 로고    scopus 로고
    • A retrospective analysis of CASP2 threading predictions
    • Marchler-Bauer A, Levitt M, Bryant SH. A retrospective analysis of CASP2 threading predictions. Proteins Suppl 1997;1:83-91.
    • (1997) Proteins Suppl , vol.1 , pp. 83-91
    • Marchler-Bauer, A.1    Levitt, M.2    Bryant, S.H.3
  • 3
    • 0029974002 scopus 로고    scopus 로고
    • Evaluation of threading specificity and accuracy
    • Bryant SH. Evaluation of threading specificity and accuracy. Proteins 1996;26:172-185.
    • (1996) Proteins , vol.26 , pp. 172-185
    • Bryant, S.H.1
  • 4
    • 0029937427 scopus 로고    scopus 로고
    • Scores for sequence searches and alignments
    • Henikoff S. Scores for sequence searches and alignments. Curr Opin Struct Biol 1996;6:353-360.
    • (1996) Curr Opin Struct Biol , vol.6 , pp. 353-360
    • Henikoff, S.1
  • 5
    • 0032509105 scopus 로고    scopus 로고
    • Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods
    • Park J, Karplus K, Barrett C, et al. Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. J Mol Biol 1998;284:1201-1210.
    • (1998) J Mol Biol , vol.284 , pp. 1201-1210
    • Park, J.1    Karplus, K.2    Barrett, C.3
  • 6
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;197;25:3389-3402.
    • (1997) Nucleic Acids Res , vol.197 , Issue.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3
  • 7
    • 0028818340 scopus 로고
    • Protein structure prediction by threading methods: Evaluation of current techniques
    • Lemer CM, Rooman MJ, Wodak SJ. Protein structure prediction by threading methods: evaluation of current techniques. Proteins 1995;23:337-355.
    • (1995) Proteins , vol.23 , pp. 337-355
    • Lemer, C.M.1    Rooman, M.J.2    Wodak, S.J.3
  • 8
    • 0031307020 scopus 로고    scopus 로고
    • Competitive assessment of protein fold recognition and alignment accuracy
    • Levitt M. Competitive assessment of protein fold recognition and alignment accuracy. Proteins Suppl 1997;1:92-104.
    • (1997) Proteins Suppl , vol.1 , pp. 92-104
    • Levitt, M.1
  • 9
    • 0029086473 scopus 로고
    • Threading analysis suggests that the obese gene product may be a helical cytokine
    • Madej T, Boguski MS, Bryant SH. Threading analysis suggests that the obese gene product may be a helical cytokine. FEBS Lett 1995;373:13-18.
    • (1995) FEBS Lett , vol.373 , pp. 13-18
    • Madej, T.1    Boguski, M.S.2    Bryant, S.H.3
  • 10
    • 0032606039 scopus 로고    scopus 로고
    • Critical assessment of methods of protein structure prediction (CASP): Round III
    • Moult J, Hubbard T, Fidelis K, Pedersen JT. Critical assessment of methods of protein structure prediction (CASP): round III. Proteins Suppl 1999;3:2-6.
    • (1999) Proteins Suppl , vol.3 , pp. 2-6
    • Moult, J.1    Hubbard, T.2    Fidelis, K.3    Pedersen, J.T.4
  • 11
    • 0032605908 scopus 로고    scopus 로고
    • Structure classification-based assessment of CASP3 predictions for the fold recognition targets
    • Murzin AG. Structure classification-based assessment of CASP3 predictions for the fold recognition targets. Proteins Suppl 1999; 3:88-103.
    • (1999) Proteins Suppl , vol.3 , pp. 88-103
    • Murzin, A.G.1
  • 12
    • 0030847766 scopus 로고    scopus 로고
    • Protein Data Bank archives of three-dimensional macromolecular structures
    • Abola EE, Sussman JL, Prilusky J, Manning NO. Protein Data Bank archives of three-dimensional macromolecular structures. Methods Enzymol 1997;277:556-571.
    • (1997) Methods Enzymol , vol.277 , pp. 556-571
    • Abola, E.E.1    Sussman, J.L.2    Prilusky, J.3    Manning, N.O.4
  • 14
    • 0345286733 scopus 로고    scopus 로고
    • http://www.ncbi.nlm.nih.gov/Structure/VAST/nrpdb.html
  • 15
    • 0027318317 scopus 로고
    • An empirical energy function for threading protein sequence through folding motif
    • Bryant SH, Lawrence CE. An empirical energy function for threading protein sequence through folding motif. Proteins 1993; 16:92-112.
    • (1993) Proteins , vol.16 , pp. 92-112
    • Bryant, S.H.1    Lawrence, C.E.2
  • 16
  • 17
    • 0033120222 scopus 로고    scopus 로고
    • Identification of homologous core structures
    • Matsuo Y, Bryant SH. Identification of homologous core structures. Proteins 1999;35:70-79.
    • (1999) Proteins , vol.35 , pp. 70-79
    • Matsuo, Y.1    Bryant, S.H.2
  • 18
    • 0028838717 scopus 로고
    • Threading a database of protein cores
    • Madej T, Gibrat J-F, Bryant SH. Threading a database of protein cores. Proteins 1995;23:356-369.
    • (1995) Proteins , vol.23 , pp. 356-369
    • Madej, T.1    Gibrat, J.-F.2    Bryant, S.H.3
  • 19
    • 0030941114 scopus 로고    scopus 로고
    • Embedding strategies for effective use of information from multiple sequence alignments
    • Henikoff S, Henikoff JG. Embedding strategies for effective use of information from multiple sequence alignments. Protein Sci 1997; 6:698-705.
    • (1997) Protein Sci , vol.6 , pp. 698-705
    • Henikoff, S.1    Henikoff, J.G.2
  • 21
    • 0033104008 scopus 로고    scopus 로고
    • The crystal structure of methyglyoxal synthase from Eschericia coli
    • Saadat D, Harrison DH. The crystal structure of methyglyoxal synthase from Eschericia coli. Structure 1999;7:309-317.
    • (1999) Structure , vol.7 , pp. 309-317
    • Saadat, D.1    Harrison, D.H.2
  • 22
    • 0030957783 scopus 로고    scopus 로고
    • Structure of carbamoyl phosphate synthetase: A journey of 96 Angstroms from substrate to product
    • Thoden JB, Holden HM, Wesenberg G, Raushel FM, Rayment I. Structure of carbamoyl phosphate synthetase: a journey of 96 Angstroms from substrate to product. Biochemistry 1997;36:6305-6316.
    • (1997) Biochemistry , vol.36 , pp. 6305-6316
    • Thoden, J.B.1    Holden, H.M.2    Wesenberg, G.3    Raushel, F.M.4    Rayment, I.5
  • 23
    • 0345718368 scopus 로고    scopus 로고
    • http://www.ncbi.nlm.nih.gov/Structure/RESEARCH/casp3/
  • 24
    • 0031296896 scopus 로고    scopus 로고
    • Measures of threading specificity and accuracy
    • Marchler-Bauer A, Bryant SH. Measures of threading specificity and accuracy. Proteins Suppl 1997;1:74-82.
    • (1997) Proteins Suppl , vol.1 , pp. 74-82
    • Marchler-Bauer, A.1    Bryant, S.H.2
  • 26
    • 0345286729 scopus 로고    scopus 로고
    • http://predictioncenter.llnl.gov/casp3/Casp3.html
  • 27
    • 0030334647 scopus 로고    scopus 로고
    • Optimum superimposition of protein structures: Ambiguities and implications
    • Feng ZK, Sippl MJ. Optimum superimposition of protein structures: ambiguities and implications. Fold Des 1996;1:123-132.
    • (1996) Fold Des , vol.1 , pp. 123-132
    • Feng, Z.K.1    Sippl, M.J.2
  • 28
    • 0032104477 scopus 로고    scopus 로고
    • How far divergent evolution goes in proteins
    • Murzin AG. How far divergent evolution goes in proteins. Curr Opin Struct Biol 1998;8:380-387.
    • (1998) Curr Opin Struct Biol , vol.8 , pp. 380-387
    • Murzin, A.G.1
  • 29
    • 0024468229 scopus 로고
    • Crystal structure of chaperone protein PapD reveals an immunoglobulin fold
    • Holmgren A, Branden CI. Crystal structure of chaperone protein PapD reveals an immunoglobulin fold. Nature 1989;342:248-251.
    • (1989) Nature , vol.342 , pp. 248-251
    • Holmgren, A.1    Branden, C.I.2
  • 30
    • 0032876705 scopus 로고    scopus 로고
    • CASP3 comparative modeling evaluation
    • Jones TA, Kleywegt GJ. CASP3 comparative modeling evaluation. Proteins Suppl 1999;3:30-46.
    • (1999) Proteins Suppl , vol.3 , pp. 30-46
    • Jones, T.A.1    Kleywegt, G.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.