Morphology of 15-mer duplexes tethered to Au(111) probed using scanning probe microscopy

Langmuir

Volumn 17, Issue 19, 2001, Pages 5727-5730

  Sam, Mui ^a   Boon, Elizabeth M ^b   Barton, Jacqueline K ^b   Hill, Michael G ^a   Spain, Eileen M ^a  

^a OCCIDENTAL COLLEGE   (United States)

^b California Institute of Technology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SCANNING PROBE MICROSCOPY;

BIOFILMS; CHEMISORPTION; DNA; HYDROPHOBICITY; MORPHOLOGY; SCANNING ELECTRON MICROSCOPY; SELF ASSEMBLY; SILICON NITRIDE;

GOLD;

EID: 0035909189     PISSN: 07437463     EISSN: None     Source Type: Journal    
DOI: 10.1021/la010496d     Document Type: Article

References (28)

1. Peterlinz, K.A.; Georgiadis, R.M.; Herne, T.M.; Tarlov, M.J. J. Am. Chem. Soc. 1997, 119, 3401.
2. Boon, E.M.; Ceres, D.M.; Drummond, T.G.; Hill, M.G.; Barton, J.K. Nat. Biotechnol. 2000, 18, 1096.
3. Steel, A.B.; Levicky, R.L.; Herne, T.M.; Tarlov, M.J. Biophys. J. 2000, 79, 975.
4. Peterson, A.W.; Heaton, R.J.; Georgiadis, R. J. Am. Chem. Soc. 2000, 122, 7837. Georgiadis, R.; Peterlinz, K.P.; Peterson, A.W. J. Am. Chem. Soc. 2000, 122, 3166.
5. Peterson, A.W.; Heaton, R.J.; Georgiadis, R. J. Am. Chem. Soc. 2000, 122, 7837. Georgiadis, R.; Peterlinz, K.P.; Peterson, A.W. J. Am. Chem. Soc. 2000, 122, 3166.
6. Huang, E.; Satjapipat, M.; Han, S.; Zhou, F. Langmuir 2001, 17, 1215.
7. Kelley, S.O.; Barton, J.K.; Jackson, N.M.; McPherson, L.D.; Potter, A.B.; Spain, E.M.; Allen, M.J.; Hill, M.G. Langmuir 1998, 14, 6781.
8. Herne, T.M.; Tarlov, M.J. J. Am. Chem. Soc. 1997, 119, 8916.
9. Levicky, R.; Herne, T.M.; Tarlov, M.J.; Satija, S.K. J. Am. Chem. Soc., 1998, 120, 9787.
10. Kelley, S.O.; Jackson, N.M.; Barton, J.K.; Hill, M.G. Bioconjugate Chem. 1997, 8, 31.
11. Kelley, S.O.; Jackson, N.M.; Hill, M.G.; Barton, J.K. Angew. Chem. 1999, 38, 941.
12. Kelley, S.O.; Boon, E.M.; Jackson, N.M.; Hill, M.G.; Barton, J.K. Nucleic Acids Res. 1999, 27, 4830.
13. Sawaguchi, T.; Yamada, T.; Okinaka, Y.; Itaya, K. J. Phys. Chem. 1995, 99, 14149. Schott, J.H.; White, H.S. Langmuir 1994, 10, 486.
14. Sawaguchi, T.; Yamada, T.; Okinaka, Y.; Itaya, K. J. Phys. Chem. 1995, 99, 14149. Schott, J.H.; White, H.S. Langmuir 1994, 10, 486.
15. See for example: Hamai, C.; Tanaka, H.; Kawai, T. J. Phys. Chem. B 2000, 104, 9894. Cai, L.; Tabata, H.; Kawai, T. Appl. Phys. Lett. 2000, 77, 3105. Kanno, T.; Tanaka, H.; Miyoshi, N.; Kawai, T. Appl. Phys. Lett. 2000, 77, 3848.
16. See for example: Hamai, C.; Tanaka, H.; Kawai, T. J. Phys. Chem. B 2000, 104, 9894. Cai, L.; Tabata, H.; Kawai, T. Appl. Phys. Lett. 2000, 77, 3105. Kanno, T.; Tanaka, H.; Miyoshi, N.; Kawai, T. Appl. Phys. Lett. 2000, 77, 3848.
17. See for example: Hamai, C.; Tanaka, H.; Kawai, T. J. Phys. Chem. B 2000, 104, 9894. Cai, L.; Tabata, H.; Kawai, T. Appl. Phys. Lett. 2000, 77, 3105. Kanno, T.; Tanaka, H.; Miyoshi, N.; Kawai, T. Appl. Phys. Lett. 2000, 77, 3848.
18. See for example: Lillehei, P.T.; Bottomley, L.A. Anal. Chem. 2000, 72, 189.
19. Alley, R.L.; Komvopoulos, K.; Howe, R.T. J. Appl. Phys. 1994, 76, 5731. Tsukruk, V.V.; Bliznyuk, V.N. Langmuir 1998, 14, 446.
20. Alley, R.L.; Komvopoulos, K.; Howe, R.T. J. Appl. Phys. 1994, 76, 5731. Tsukruk, V.V.; Bliznyuk, V.N. Langmuir 1998, 14, 446.
21. Hillier, A.C.; Kim, S.; Bard, A.J. J. Phys. Chem. 1996, 100, 18808. Hu, K.; Bard, A.J. Langmuir 1997, 13, 5114. Hu, K.; Chai, Z.; Whitesell, J.K.; Bard, A.J. Langmuir 1999, 15, 3343.
22. Hillier, A.C.; Kim, S.; Bard, A.J. J. Phys. Chem. 1996, 100, 18808. Hu, K.; Bard, A.J. Langmuir 1997, 13, 5114. Hu, K.; Chai, Z.; Whitesell, J.K.; Bard, A.J. Langmuir 1999, 15, 3343.
23. Hillier, A.C.; Kim, S.; Bard, A.J. J. Phys. Chem. 1996, 100, 18808. Hu, K.; Bard, A.J. Langmuir 1997, 13, 5114. Hu, K.; Chai, Z.; Whitesell, J.K.; Bard, A.J. Langmuir 1999, 15, 3343.
24. Molecular mechanics computations were performed by MacSpartan Pro/Plus (version 2.0) from Wavefunction, Inc. For each energy-minimization computation, a 12-met duplex crystal structure (ref 18) was imported and its nuclei were frozen. The two linkers were attached within the software, and the energy was minimized with a MMFF basis set.
25. The crystal structure for the 12-mer duplex structure was obtained from http://www.ncbi.nlm.nih.gov. The file name is 1dnm.pdb; the waters were removed.
26. Poirer, G.E.; Pylant, E.D. Science 1996, 272, 1145. Xu, S.; Liu, G.-Y. Langmuir 1997, 13, 127. Xu, S.; Cruchon-Dupeyrat, S.J.N.; Garno, J.C.; Liu, G.-Y; Jennings, G.K.; Yong, T.-H.; Laibinis, P.E. J. Chem. Phys. 1998, 108, 5002.
27. Poirer, G.E.; Pylant, E.D. Science 1996, 272, 1145. Xu, S.; Liu, G.-Y. Langmuir 1997, 13, 127. Xu, S.; Cruchon-Dupeyrat, S.J.N.; Garno, J.C.; Liu, G.-Y; Jennings, G.K.; Yong, T.-H.; Laibinis, P.E. J. Chem. Phys. 1998, 108, 5002.
28. Poirer, G.E.; Pylant, E.D. Science 1996, 272, 1145. Xu, S.; Liu, G.-Y. Langmuir 1997, 13, 127. Xu, S.; Cruchon-Dupeyrat, S.J.N.; Garno, J.C.; Liu, G.-Y; Jennings, G.K.; Yong, T.-H.; Laibinis, P.E. J. Chem. Phys. 1998, 108, 5002.