Thermodynamics of peptide inhibitor binding to hiv-1 gp41

Biochemistry

Volumn 40, Issue 19, 2001, Pages 5633-5641

  Cole, James L ^a   Garsky, Victor M ^a  

^a MERCK RESEARCH LABORATORIES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALORIMETRY; CELL MEMBRANES; CORROSION INHIBITORS; HYDROPHOBICITY; PROTEINS; STOICHIOMETRY; THERMODYNAMICS; TITRATION;

PEPTIDES;

VIRUSES;

GLYCOPROTEIN GP 41;

ARTICLE; CELL FUSION; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; PRIORITY JOURNAL; PROTEIN CONFORMATION; VIRUS CELL INTERACTION; VIRUS ENVELOPE;

AMINO ACID SEQUENCE; ANTI-HIV AGENTS; BINDING, COMPETITIVE; CALORIMETRY; HEAT; HIV ENVELOPE PROTEIN GP41; HIV-1; HUMANS; LIGANDS; MOLECULAR SEQUENCE DATA; PEPTIDES, CYCLIC; PROTEIN BINDING; PROTEIN CONFORMATION; SOLUTIONS; THERMODYNAMICS; ULTRACENTRIFUGATION;

HIV 1; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 0035873517     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi010085w     Document Type: Article

References (51)

1. Chan, D. C., and Kim, P. S. (1998) Cell 93, 681-684.
2. Tan, K., Liu, J.-H., Wang, J.-H., Shen, S., and Lu, M. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 12303-12308.
3. Chan, D. C., Fass, D., Berger, J. M., and Kim, P. S. (1997) Cell 89, 263-273.
4. Weissenhorn, W., Dessen, A., Harrison, S. C., Skehel, J. J., and Wiley, D. C. (1997) Nature 387, 426-430.
5. Yang, Z.-N., Mueser, T. C., Kaufman, J., Stahl, S. J., Wingfield, P. T., and Hyde, C. C. (1999) J. Struct. Biol. 126, 131-144.
6. Malashkevich, V. N., Chan, D. C., Chutkowski, C. T., and Kim, P. S. (1998) Proc: Natl. Acad. Sci. U.S.A. 95, 9134-9139.
7. Caffrey, M., Cai, M., Kaufman, J., Stahl, S. J., Wingfield, P. T., Covell, D. G., Gronenborn, A., and Clore, G. M. (1998) EMBO J. 17, 4572-4584.
8. Judice, J. K., Tom, J. Y., Huang, W., Wrin, T., Vennari, J., Petropoulos, C. J., and McDowell, R. S. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 13426-13430.
9. Furuta, R. A., Wild, C. T., Weng, Y., and Weiss, C. D. (1998) Nat. Struct. Biol. 5, 276-279.
10. Skehel, J. J., and Wiley, D. C. (1998) Cell 95, 871-874.
11. Jiang, S., Lin, K., Strick, N., and Neurath, A. R. (1993) Nature 365, 113.
12. Wild, C. T., Oas, T., McDanal, C. B., Bolognesi, D., and Matthews, T. J. (1992) Proc: Natl. Acad. Sci. U.S.A. 89, 10537-10541.
13. Kilby, J., Hopkins, S., Venetta, T., DiMassimo, B., Cloud, G., Lee, J., Alldredge, L., Hunter, E., Lambert, D., Bolognesi, D., Matthews, T., Johnson, M., Nowak, M., Shaw, G., and Saag, M. (1998) Nat. Med. 4, 1302-1307.
14. Caffrey, M., Kaufman, J., Stahl, S., Wingfield, P., Gronenborn, A. M., and Clore, G. M. (1999) Protein Sci. 8, 1904-1907.
15. Chan, D. C., Chutkowski, C. T., and Kim, P. S. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 15613-15617.
16. Rimsky, L. T., Shugars, D. C., and Matthews, T. J. (1998) J. Virol. 72, 986-993.
17. Eckert, D. M., Malashkevich, V. N., Hong, L. H., Carr, P. A., and Kim, P. S. (1999) Cell 99, 103-115.
18. Ferrer, M., Kapoor, T. M., Strassaier, T., Weissenhorn, W., Skehel, J. J., Oprian, D., Shreiber, S. L., Wiley, D. C., and Harrison, S. C. (1999) Nat. Struct. Biol. 6, 953-960.
19. Zhou, G., Ferrer, M., Chopra, R., Kapoor, T. M., Strassaier, T., Weissenhorn, W., Skehel, J. J., Oprian, D., Shreiber, S. L., Harrison, S. C., and Wiley, D. C. (2000) Bioorg. Med. Chem. 8, 2219-2228.
20. Lu, M., Blacklow, S. C., and Kim, P. S. (1995) Nat. Struct. Biol. 2, 1075-1082.
21. Jiang, S., Lin, K., Zhang, L., and Debnath, A. K. (1999) J. Virol. Methods 80, 85-96.
22. Jelesarov, I., and Bosshard, H. R. (1999) J. Mol. Recognit. 12, 3-18.
23. Ladbury, J. E., and Chowdry, B. Z. (1996) Chem. Biol. 3, 791-801.
24. Fisher, H. F., and Singh, N. (1995) Methods Enzymol. 259, 194-221.
25. Schuck, P. (1998) Biophys. J. 75, 1503-1512.
26. Schuck, P. (2000) Biophys. J. 78, 1606-1619.
27. Laue, T. M., Shah, B. D., Ridgeway, T. M., and Pelletier, S. L. (1992) in Analytical Ultracentrifugation in Biochemistry and Polymer Science (Harding, S., Rowe, A., and Horton, J., Eds.) pp 90-125, Royal Society of Chemistry, Cambridge, U.K.
28. Gorshkova, I., Moore, J., McKenney, K., and Schwarz, F. (1995) J. Biol. Chem. 270, 21679-21683.
29. Murphy, K. P., Xie, D., Garcia, K. C., Amzel, L. M., and Freire, E. (1993) Proteins 15, 113-120.
30. Stites, W. E. (1997) Chem. Rev. 97, 1233-1250.
31. Murphy, K. P., and Freire, E. (1992) Adv. Protein Chem. 43, 313-361.
32. Spolar, R. S., and Record, M. T. (1994) Science 263, 777-784.
33. Jones, P. L., Korte, T., and Blumenthal, R. (1998) J. Biol. Chem. 273, 404-409.
34. Munoz-Barroso, I., Durell, S., Sakaguchi, K., Appella, E., and Blumenthal, R. (1998) J. Cell Biol. 140, 315-323.
35. Southall, N. T., and Dill, K. A. (2000) J. Phys. Chem. B 104, 1326-1331.
36. Haberman, S. M., and Murphy, K. P. (1996) Protein Sci. 5, 1229-1239.
37. Davis, A. M., and Teague, S. J. (1999) Angew. Chem., Int. Ed. 38, 736-749.
38. Scholtz, J. M., Marqusee, S., Baldwin, R. L., York, E. J., Stewart, J. M., Santoro, M., and Bolen, D. W. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 2854-2858.
39. Ackroyd, P. C., Cleary, J., and Glick, G. D. (2001) Biochemistry 40, 2911-2922.
40. Williams, D. H., and Westwell, M. S. (1996) Chem. Biol. 3, 695-701.
41. Dunitz, J. D. (1995) Chem. Biol. 2, 709-712.
42. Gilli, P., Ferretti, V., Gilli, G., and Borea, P. A. (1994) J. Phys. Chem. 98, 1515-1518.
43. Swaminathan, C. P., Nandi, A., Visweswariah, S. S., and Surolia, A. (1999) J. Biol. Chem. 274, 31272-31278.
44. Cooper, A. (1999) Curr. Opin. Chem. Biol. 3, 557-563.
45. Jin, B.-S., Ryu, J.-R., Ahn, K., and Yu, Y. G. (2000) AIDS Res. Hum. Retroviruses 16, 1797-1804.
46. Root, M. J., Kay, M. S., and Kim, P. S. (2001) Science 291, 884-888.
47. Ye, H., and Wu, H. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 8961-8966.
48. McNemar, C., Snow, M. E., Windsor, W. T., Prongay, A., Mui, P., Zhang, R., Durkin, J., Le, H. V., and Weber, P. C. (1997) Biochemistry 36, 10006-10014.
49. Wu, J., Li, J., Long, D. G., and Weis, R. M. (1996) Biochemistry 35, 4984-4993.
50. Schmidt, T. G. M., Koepke, J., Frank, R., and Skerra, A. (1996) J. Mol. Biol. 255, 753-766.
51. Renzoni, D. A., Pugh, D. J. R., Siligardi, G., Das, P., Morton, C. J., Rossi, C., Waterfield, M. D., Campbell, I. D., and Ladbury, J. E. (1996) Biochemistry 35, 15646-15653.