메뉴 건너뛰기




Volumn 29, Issue 19, 2001, Pages 3910-3918

Modelling ion binding to AA platform motifs in RNA: A continuum solvent study including conformational adaptation

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CALCIUM ION; CATION; CESIUM ION; LITHIUM ION; MAGNESIUM ION; POTASSIUM ION; RIBOZYME; RNA; RUBIDIUM ION; SODIUM ION; SOLVENT;

EID: 0035477789     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.19.3910     Document Type: Article
Times cited : (19)

References (49)
  • 1
    • 0027183545 scopus 로고
    • Ribozymes: A distinct class of metalloenzymes
    • (1993) Science , vol.261 , pp. 709-714
    • Pyle, A.M.1
  • 3
    • 0028268090 scopus 로고
    • Kinetic and thermodynamic analysis of RNA-protein interactions in the RNAse P holoenzyme from Escherichia coli
    • (1994) Biochemistry , vol.33 , pp. 1406-1411
    • Talbot, S.1    Altman, S.2
  • 20
    • 0034578639 scopus 로고    scopus 로고
    • Comparison of molecular dynamics and harmonic mode calculations on RNA
    • (2000) Biopolymers , vol.54 , pp. 547-560
    • Zacharias, M.1
  • 30
    • 0035041676 scopus 로고    scopus 로고
    • Conformational analysis of DNA-trinucleotide-hairpin-loop structures using a continuum solvent model
    • (2001) Biophys. J. , vol.80 , pp. 2350-2363
    • Zacharias, M.1
  • 31
    • 0033064123 scopus 로고    scopus 로고
    • Unrestrained stochastic dynamics simulations of the UUCG tetraloop using an implicit solvation model
    • (1999) Biophys. J. , vol.76 , pp. 3192-3205
    • Williams, D.J.1    Hall, K.B.2
  • 32
    • 0034677665 scopus 로고    scopus 로고
    • Experimental and theoretical studies of the effects of deoxyribose substitutions on the stability of the UUCG tetraloop
    • (2000) J. Mol. Biol. , vol.297 , pp. 251-265
    • Williams, D.J.1    Hall, K.B.2
  • 38
    • 0344796204 scopus 로고
    • Ion-water interaction potential derived from free energy perturbation simulations
    • (1990) J. Phys. Chem. , vol.94 , pp. 8021-8024
    • Aqvist, J.J.1
  • 42
    • 0003967634 scopus 로고
    • Metal Ions in Solution
    • Ellis Horwood, Chichester, UK.
    • (1978)
    • Burgess, M.A.1
  • 45
    • 73049154846 scopus 로고
    • Cation selective glass electrodes and their mode of operation
    • (1962) Biophys. J. , vol.2 , pp. 259-323
    • Eisenman, G.1
  • 46
    • 0021070747 scopus 로고
    • Ion selectivity revisited: The role of kinetic and equilibrium processes in ion permeation through channels
    • (1983) J. Membr. Biol. , vol.76 , pp. 197-225
    • Eisenman, G.1    Horn, R.2
  • 47
    • 0032532765 scopus 로고    scopus 로고
    • Exploration of metal ion binding sites in RNA folds by brownian dynamics simulations
    • (1998) Structure , vol.6 , pp. 1303-1314
    • Hermann, T.1    Westhof, E.2
  • 48
    • 0033523082 scopus 로고    scopus 로고
    • Conformational analysis of single-base bulges in A-form DNA and RNA using a hierarchical approach and energetic evaluation with a continuum solvent model
    • (1999) J. Mol. Biol. , vol.289 , pp. 261-275
    • Zacharias, M.1    Sklenar, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.