메뉴 건너뛰기




Volumn 52, Issue 2, 2001, Pages 164-170

Correlation between Shine-Dalgarno sequence conservation and codon usage of bacterial genes

Author keywords

Codon adaptation index; Free energy; Gene expression; Shine Dalgarno sequence; Start codon; Translation efficiency

Indexed keywords

RNA POLYMERASE;

EID: 0035089940     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002390010145     Document Type: Article
Times cited : (25)

References (24)
  • 2
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • (1997) Science , vol.277 , pp. 1453-1474
    • Blattner, F.R.1
  • 3
    • 0023126266 scopus 로고
    • Coevolution of codon usage and transfer RNA abundance
    • (1987) Nature , vol.325 , pp. 728-730
    • Bulmer, M.1
  • 4
    • 0025941139 scopus 로고
    • The selection-mutation-drift theory of synonymous codon usage
    • (1991) Genetics , vol.129 , pp. 897-907
    • Bulmer, M.1
  • 5
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon. Methanococcus jannaschii
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1
  • 6
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1
  • 7
    • 0028829125 scopus 로고
    • The minimal gene complement of Mycoplasma genitalium
    • (1995) Science , vol.270 , pp. 397-403
    • Fraser, C.M.1
  • 10
    • 0020363515 scopus 로고
    • Preferential codon usage in prokaryotic genes: The optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes
    • (1982) Gene , vol.18 , pp. 199-209
    • Grosjean, H.1    Fiers, W.2
  • 12
    • 0019474499 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes
    • (1981) J Mol Biol , vol.146 , pp. 1-21
    • Ikemura, T.1
  • 13
    • 0019949369 scopus 로고
    • Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes
    • (1982) J Mol Biol , vol.158 , pp. 573-597
    • Ikemura, T.1
  • 14
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • (1985) Mol Biol Evol , vol.2 , pp. 13-34
    • Ikemura, T.1
  • 15
    • 0030606607 scopus 로고    scopus 로고
    • Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
    • (1996) DNA Res , vol.3 , pp. 109-136
    • Kaneko, T.1
  • 16
    • 0031458333 scopus 로고    scopus 로고
    • The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
    • (1997) Nature , vol.390 , pp. 364-370
    • Klenk, H.P.1
  • 17
    • 0030731108 scopus 로고    scopus 로고
    • The complete genome sequence of the grampositive bacterium Bacillus subtilis
    • (1997) Nature , vol.390 , pp. 249-256
    • Kunst, F.1
  • 18
    • 0004279283 scopus 로고    scopus 로고
    • Oxford University Press and Cell Press, New York
    • (1997) Genes VI , pp. 104
    • Levin, B.1
  • 19
    • 0032822430 scopus 로고    scopus 로고
    • Analysis of base-pairing potentials between 16S rRNA and 5′UTR for translation initiation in various prokaryotes
    • (1999) Bioinformatics , vol.15 , pp. 578-581
    • Osada, Y.1
  • 21
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
    • (1987) Nucleic Acids Res , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 22
    • 0023046874 scopus 로고
    • Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
    • (1986) Nucleic Acids Res , vol.14 , pp. 5125-5143
    • Sharp, P.M.1
  • 23
    • 15644383855 scopus 로고    scopus 로고
    • Complete genome sequence of Methanobacterium thermoautotrophicum delta H: Functional analysis and comparative genomics
    • (1997) J Bacteriol , vol.179 , pp. 7135-7155
    • Smith, D.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.