Analysis of base-pairing potentials between 16S rRNA and 5' UTR for translation initiation in various prokaryotes

Bioinformatics

Volumn 15, Issue 7-8, 1999, Pages 578-581

  Osada, Y ^a   Saito, R ^a   Tomita, M ^a  

^a KEIO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RNA 16S;

ALGORITHM; ARCHAEBACTERIUM; BACILLUS SUBTILIS; BASE PAIRING; BORRELIA BURGDORFERI; COMPUTER PROGRAM; CONFERENCE PAPER; CYANOBACTERIUM; ENERGY; ESCHERICHIA COLI; EUBACTERIUM; EUKARYOTE; GENOME; HAEMOPHILUS INFLUENZAE; HELICOBACTER PYLORI; MYCOPLASMA GENITALIUM; MYCOPLASMA PNEUMONIAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROKARYOTE; RIBOSOME; RNA SEQUENCE; SACCHAROMYCES CEREVISIAE; START CODON; TRANSLATION INITIATION;

ARCHAEA; BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); BORRELIA; BORRELIA BURGDORFERI; ESCHERICHIA COLI; EUKARYOTA; HAEMOPHILUS INFLUENZAE; HELICOBACTER PYLORI; MYCOPLASMA GENITALIUM; MYCOPLASMA PNEUMONIAE; PROKARYOTA; SACCHAROMYCES CEREVISIAE; SYNECHOCYSTIS;

EID: 0032822430     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/15.7.578     Document Type: Conference Paper

References (4)

1. Sazuka, T. and Ohara, O. (1996) Sequence features surrounding the translation initiation sites assigned on the genome sequence of Synechocystis sp. strain PCC6803 by amino-terminal protein sequencing. DNA Res., 3, 225-232.
2. Schneider, T.D. (1996) Reading of DNA sequence logos: prediction of major groove binding by information theory. Methods Enzymol., 274, 445-455.
3. Shine, J. and Dalgarno, L. (1974) The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc. Natl Acad. Sci. USA, 71, 1342-1346.
4. Turner, D.H. et al. (1987) Improved parameters for prediction of RNA structure. Cold Spring Harbour Symp. Quant. Biol., 52, 123-133.