Heterogeneous nuclear ribonucleoprotein A1 binds to the 3′-untranslated region and mediates potential 5′-3′-end cross talks of mouse hepatitis virus RNA

Journal of Virology

Volumn 75, Issue 11, 2001, Pages 5009-5017

  Huang, Peiyong ^a   Lai, Michael M C ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; COMPLEMENTARY RNA; RECOMBINANT PROTEIN; RIBONUCLEOPROTEIN; VIRUS RNA;

3' UNTRANSLATED REGION; ANIMAL CELL; ARTICLE; BINDING SITE; COMPLEX FORMATION; CONTROLLED STUDY; HOST CELL; IMMUNOPRECIPITATION; MOLECULAR INTERACTION; MURINE HEPATITIS CORONAVIRUS; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN LOCALIZATION; RNA BINDING; RNA REPLICATION; RNA TRANSCRIPTION; ULTRAVIOLET RADIATION;

3' UNTRANSLATED REGIONS; 5' UNTRANSLATED REGIONS; ANIMALS; BASE SEQUENCE; BINDING SITES; BLOTTING, NORTHERN; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEIN GROUP A-B; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEINS; MURINE HEPATITIS VIRUS; MUTATION; NUCLEIC ACID CONFORMATION; POLYPYRIMIDINE TRACT-BINDING PROTEIN; PRECIPITIN TESTS; PROTEIN BINDING; RECOMBINANT PROTEINS; RIBONUCLEOPROTEINS; RNA, VIRAL; RNA-BINDING PROTEINS; TRANSCRIPTION, GENETIC; VIRAL PROTEINS; VIRUS REPLICATION;

EID: 0035026469     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.75.11.5009-5017.2001     Document Type: Article

References (55)

1. Abdul-Manan, N., and K. R. Williams. 1996. hnRNP A1 binds promiscuously to oligoribonucleotides: utilization of random and homo-oligonucleotides to discriminate sequence from base-specific binding. Nucleic Acids Res. 24:4063-4070.
2. Andino, R., G. E. Rieckhof, P. L. Achacoso, and D. Baltimore. 1993. Poliovirus RNA synthesis utilizes an RNP complex formed around the 5′-end of viral RNA. EMBO J. 12:3587-3598.
3. Bothwell, A. L., D. W. Ballard, W. M. Philbrick, G. Lindwall, S. E. Maher, M. M. Bridgett, S. F. Jamison, and M. A. Garcia-Blanco. 1991. Murine polypyrimidine tract binding protein. Purification, cloning, and mapping of the RNA binding domain. J. Biol. Chem. 266:24657-24663.
4. Burd, C. G., and G. Dreyfuss. 1994. RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13:1197-1204.
5. Cartegni, L., M. Maconi, E. Morandi, F. Cobianchi, S. Riva, and G. Biamonti. 1996. hnRNP A1 selectively interacts through its Gly-rich domain with different RNA-binding proteins. J. Mol. Biol. 259:337-348.
6. Fodor, E., D. C. Pritlove, and G. G. Brownlee. 1994. The influenza virus panhandle is involved in the initiation of transcription. J. Virol. 68:4092-4096.
7. Furuya, T., and M. M. C. Lai. 1993. Three different cellular proteins bind to the complementary sites on the 5′-end positive- and 3′-end negative strands of mouse hepatitis virus RNA. J. Virol. 67:7215-7222.
8. Guan, H., C. Song, and A. E. Simon. 1997. RNA promoters located on (-)-strands of a subviral RNA associated with turnip crinkle virus. RNA 3:1401-1412.
9. Herold, J., and R. Andino. 2000. Poliovirus requires a precise 5′ end for efficient positive-strand RNA synthesis. J. Virol. 74:6394-6400.
10. Hirano, N., K. Fujiwara, S. Hino, and M. Matsumoto. 1974. Replication and plaque formation of mouse hepatitis virus (MHV-2) in mouse cell line DBT culture. Arch. Gesamte Virusforsch. 44:298-302.
11. Huang, P., and M. M. C. Lai. 1999. Polypyrimidine tract-binding protein binds to the complementary strand of the mouse hepatitis virus 3′ untranslated region, thereby altering RNA conformation. J. Virol. 73:9110-9116.
12. Ishikawa, M., J. Diez, M. Restrepo-Hartwig, and P. Ahlquist. 1997. Yeast mutations in multiple complementation groups inhibit brome mosaic virus RNA replication and transcription and perturb regulated expression of the viral polymerase-like gene. Proc. Natl. Acad. Sci. USA 94:13810-13815.
13. Janda, M., and P. Ahlquist. 1993. RNA-dependent replication, transcription, and persistence of brome mosaic virus RNA replicons in S. cerevisiae. Cell 72:961-970.
14. Keene, J. D., M. Schubert, and R. A. Lazzarini. 1979. Terminal sequences of vesicular stomatitis virus RNA are both complementary and conserved. J. Virol. 32:167-174.
15. Kim, K. H., and C. L. Hemenway. 1999. Long-distance RNA-RNA interactions and conserved sequence elements affect potato virus X plus-strand RNA accumulation. RNA 5:636-645.
16. Kim, K. H., and C. L. Hemenway. 1997. Mutations that alter a conserved element upstream of the potato virus X triple block and coat protein genes affect subgenomic RNA accumulation. Virology 232:187-197.
17. Kim, Y.-N., Y. S. Jeong, and S. Makino. 1993. Analysis of cis-acting sequences essential for coronavirus defective interfering RNA replication. Virology 197:53-63.
18. Kusov, Y. Y., M. Weitz, G. Dollenmeier, V. Gauss-Muller, and G. Siegl. 1996. RNA-protein interactions at the 3′ end of the hepatitis A virus RNA. J. Virol. 70:1890-1897.
19. Lahser, F. C., L. E. Marsh, and T. C. Hall. 1993. Contributions of the brome mosaic virus RNA-3 3′-nontranslated region to replication and translation. J. Virol. 67:3295-3303.
20. Lai, M. M. C. 1998. Cellular factors in the transcription and replication of viral RNA genomes: a parallel to DNA-dependent RNA transcription. Virology 244:1-12.
21. Lai, M. M. C., and D. Cavanagh. 1997. The molecular biology of coronaviruses. Adv. Virus Res. 48:1-100.
22. Lai, M. M. C., and S. A. Stohlman. 1978. The RNA of mouse hepatitis virus. J. Virol. 26:236-242.
23. Lamond, A., and B. S. Sproat. 1996. Isolation and characterization of ribonucleoprotein complexes, p. 103-140. In S. J. Higgins and B. D. Hames (ed.), RNA processing: a practical approach. Oxford University Press, New York, N.Y.
24. Lee, H.-J., C.-K. Shieh, A. E. Gorbalenya, E. V. Koonin, N. La Monica, J. Tuler, A. Bagdzyahdzhyan, and M. M.-C. Lai. 1991. The complete sequence (22 kilobases) of murine coronavirus gene 1 encoding the putative proteases and RNA polymerase. Virology 180:567-582.
25. Li, H.-P., P. Huang, S. Park, and M. M. C. Lai. 1999. Polypyrimidine tract-binding protein binds to the leader RNA of mouse hepatitis virus and serves as a regulator of viral transcription. J. Virol. 73:772-777.
26. Li, H.-P., X. Zhang, R. Duncan, L. Comai, and M. M. C. Lai. 1997. Heterogeneous nuclear ribonucleoprotein A1 binds to the transcription-regulatory region of mouse hepatitis virus RNA. Proc. Natl. Acad. Sci. USA 94:9544-9549.
27. Liao, C.-L., and M. M. C. Lai. 1994. Requirement of the 5′-end genomic sequence as an upstream cis-acting element for coronavirus subgenomic mRNA transcription. J. Virol. 68:4727-4737.
28. Lin, Y.-J., X. Zhang, R.-C. Wu, and M. M. C. Lai. 1996. The 3′-untranslated region of the coronavirus RNA is required for subgenomic mRNA transcription from a defective interfering RNA. J. Virol. 70:7236-7240.
29. Lin, Y.-J., and M. M. C. Lai. 1993. Deletion mapping of a mouse hepatitis virus defective-interfering RNA reveals the requirement of an internal and discontiguous sequence for replication. J. Virol. 67:6110-6118.
30. Lin, Y.-J., C. L. Liao, and M. M. C. Lai. 1994. Identification of the cis-acting signal for minus-strand RNA synthesis of a murine coronavirus: implications for the role of minus-strand RNA in RNA replication and transcription. J. Virol. 68:8131-8140.
31. Liu, Q., W. Yu, and J. L. Leibowitz. 1997. A specific host cellular protein binding element near the 3′-end of mouse hepatitis virus genomic RNA. Virology 232:74-85.
32. Luo, G., W. Luytjes, M. Enami, and P. Palese. 1991. The polyadenylation signal of influenza virus RNA involves a stretch of uridines followed by the RNA duplex of the panhandle structure. J. Virol. 65:2861-2867.
33. Makino, S., N. Fujioka, and K. Fujiwara. 1985. Structure of the intracellular defective viral RNAs of defective interfering particles of mouse hepatitis virus. J. Virol. 54:329-336.
34. Makino, S., C.-K. Shieh, J. G. Keck, and M. M. C. Lai. 1988. Defective interfering particles of murine coronavirus: mechanism of transcription of defective viral RNA. Virology 163:104-111.
35. Makino, S., C.-K. Shieh, L. H. Soe, S. C. Baker, and M. M. C. Lai. 1988. Primary structure and translation of a defective-interfering RNA of murine coronavirus. Virology 166:550-560.
36. Makino, S., F. Taguchi, and K. Fujiwara. 1984. Defective interfering particles of mouse hepatitis virus. Virology 133:9-17.
37. Makino, S., K. Yokomori, and M. M. C. Lai. 1990. Analysis of efficiently packaged defective-interfering RNAs of murine coronavirus: localization of a possible RNA-packaging signal. J. Virol. 64:6045-6053.
38. Manaker, R. A., C. V. Piczak, A. A. Miller, and M. F. Stanton. 1961. A hepatitis virus complicating studies with mouse leukemia. J. Natl. Cancer Inst. 27:29-51.
39. Pachuk, C. J., P. J. Bredenbeek, P. W. Zoltick, W. J. M. Spaan, and S. R. Weiss. 1989. Molecular cloning of the gene encoding the putative polymerase of mouse hepatitis coronavirus strain A59. Virology 171:141-148.
40. Pogue, G. P., and T. C. Hall. 1992. The requirement for a 5′ stem-loop structure in brome mosaic virus replication supports a new model for viral positive-strand RNA initiation. J. Virol. 66:674-684.
41. Portman, D. S., and G. Dreyfuss. 1994. RNA annealing activities in HeLa nuclei. EMBO J. 13:213-221.
42. Shi, S. T., P. Huang, H.-P. Li, and M. M. C. Lai. 2000. Heterogeneous nuclear ribonucleoprotein A1 regulates RNA synthesis of a cytoplasmic virus. EMBO J. 19:4701-4711.
43. Spaan, W., D. Cavanagh, and M. C. Horzinek. 1988. Coronaviruses: structure and genome expression. J. Gen. Virol. 69:2939-2952.
44. Spagnolo, J. F., and B. G. Hogue. 2000. Host protein interactions with the 3′ end of bovine coronavirus RNA and the requirement of the poly(A) tail for coronavirus defective genome replication. J. Virol. 74:5053-5065.
45. Tarun, S. Z. J., and A. B. Sachs. 1996. Association of the yeast poly(A) tail binding protein with translation initiation factor eIF-4G. EMBO J. 15:7168-7177.
46. Wells, S. E., P. E. Hillner, R. D. Vale, and A. B. Sachs. 1998. Circularization of mRNA by eukaryotic translation initiation factors. Mol. Cell 2:135-140.
47. Wertz, G. W., S. Whelan, A. LeGrone, and L. A. Ball. 1994. Extent of terminal complementarity modulates the balance between transcription and replication of vesicular stomatitis virus RNA. Proc. Natl. Acad. Sci. USA 91:8587-8591.
48. Whelan, S. P., and G. W. Wertz. 1997. Regulation of RNA synthesis by the genomic termini of vesicular stomatitis virus: identification of distinct sequences essential for transcription hut not replication. J. Virol. 73:297-306.
49. Will, C. L., B. Kastner, and R. Luehrmann. 1996. Analysis of ribonucleoprotein interactions, p. 141-177. In S. J. Higgins and B. D. Hames (ed.), RNA processing: a practical approach. Oxford University Press, New York, N.Y.
50. Yu, W., and J. L. Leibowitz. 1995. A conserved motif at the 3′ end of mouse hepatitis virus genomic RNA required for host protein binding and viral RNA replication. Virology 214:128-138.
51. Yu, W., and J. L. Leibowitz. 1995. Specific binding of host cellular proteins to multiple sites within the 3′ end of mouse hepatitis virus genomic RNA. J. Virol. 69:2016-2023.
52. Zhang, X., H.-P. Li, W. Xue, and M. M. C. Lai. 1999. Formation of a ribonucleoprotein complex of mouse hepatitis virus involving heterogeneous nuelear ribonucleoprotein A1 and transcription-regulatory elements of viral RNA. Virology 264:115-124.
53. Zhang, X. M., and M. M. C. Lai. 1995. Interactions between the cytoplasmic proteins and the intergenic (promoter) sequence of mouse hepatitis virus RNA: correlation with the amounts of subgenomic mRNA transcribed. J. Virol. 69:1637-1644.
54. Zheng, H., P. Palese, and A. Garcia-Sastre. 1996. Nonconserved nucleotides at the 3′ and 5′ ends of an influenza A virus RNA play an important role in viral RNA replication. Virology 217:242-251.
55. Zuker, M. 1989. On finding all suboptimal foldings of an RNA molecule Science 244:48-52.