hnRNP A1 binds promiscuously to oligoribonucleotides: Utilization of random and homo-oligonucleotides to discriminate sequence from base-specific binding

Nucleic Acids Research

Volumn 24, Issue 20, 1996, Pages 4063-4070

  Abdul Manan, Norzehan ^a   Williams, Kenneth R ^a,b  

^a YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b YALE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; OLIGORIBONUCLEOTIDE; RIBONUCLEOPROTEIN;

ARTICLE; BINDING AFFINITY; BIOGENESIS; CONTROLLED STUDY; FLUORESCENCE ANALYSIS; NUCLEOTIDE SEQUENCE; POINT MUTATION; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN RNA BINDING; RNA SEQUENCE; TELOMERE;

BINDING, COMPETITIVE; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEIN GROUP A-B; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEINS; OLIGORIBONUCLEOTIDES; POINT MUTATION; RIBONUCLEOPROTEINS; RNA PRECURSORS; RNA-BINDING PROTEINS; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECTROMETRY, FLUORESCENCE; TELOMERE;

EID: 0029812154     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/24.20.4063     Document Type: Article

References (45)

1. Le Stourgeon, W., Barnett, S.F. and Northington, S.J.(1990) in Strauss, P. and Wilson, S. (eds) The Eukaryotic Nucleus, Molecular Biochemistry and Macromolecular Assemblies. Telford Press, London Vol 2. p 477.
2. Dreyfuss, G., Matunis, M.J., Pinol Roma, S. and Burd, C.G. (1993) Annu. Rev. Biochem. 269, 289-321.
3. Keene, J.D. and Query, C.C. (1991) in Cohn, W. and Moldave, K. (eds) Progress in Nucleic Acid Research and Molecular Biology. Academic Press, Vol 41, pp. 179-202.
4. Kiledjian, M., Burd, C.G., Görlach, M., Portman, D.S. and Dreyfuss, G. (1994) in Mattaj, I. and Nagai, K. (eds) Protein-RNA Interactions-Frontiers in Molecular Biology. Oxford University Press, Oxford, pp. 127-149.
5. Piñol-Roma, S., Choi, Y.D., Matunis, M.J. and Dreyfuss, G. (1988) Genes Dev. 2, 215-227.
6. Merrill, B.M., LoPresti, M.B., Stone, K.L. and Williams, K.R. (1986) J. Biol. Chem. 261, 878-883.
7. Adam, S.A., Nakagawa, T., Swanson, M.S., Woodruff, T.K. and Dreyfuss, G. (1986) Mol. Cell. Biol. 6, 2932-2943.
8. Birney, E., Kumar, S. and Krainer, A.R. (1993) Nucleic Acids Res. 21, 5803-5816.
9. Dreyfuss, G., Swanson, M.S. and Pinol-Roma, S. (1988) Trends Biochem. Sci. 13, 6-91.
10. Query, C.C., Bentley, R.C. and Keene, J.D. (1989) Cell 57, 89-101.
11. Bandzilius, R.J., Swanson, M.S. and Dreyfuss, G. (1989) Genes Dev. 3, 431-437.
12. Merrill, B.M. and Williams, K.R. (1990) In Strauss, P. and Wilson, S. (eds) The Eukaryotic Nucleus, Molecular Biochemistry and Macromolecular Assemblies. Telford Press, London Vol. 2, pp. 579-604.
13. Kenan, D.J., Query, C.C. and Keene, J.D. (1991) Trends Biochem. Sci. 16, 214-220.
14. Shamoo, A.Y., Abdul-Manan, N. and Williams, K.R. (1995) Nucleic Acids Res. 23, 725-728.
15. Nagai, K. Oubridge, C., Jessen, T.H., Li, J. and Evans, P.R. (1990) Nature 348, 515-520.
16. Huffman, D.W., Query, C.C., Golden, B.L., White, S.W. and Keene, J.D. (1991) Proc. Natl. Acad. Sci. USA 88, 2495-2499.
17. Wittekind, M., Görlach, M., Friedrichs, M., Dreyfuss, G. and Mueller, L. (1992) Biochemistry 31, 6254-6265.
18. Oubridge, C., Ito, N., Evans, P.R., Teo, C.-H. and Nagai, K. (1995) Nature 372, 42-438.
19. Merrill, B.M., Stone, K.L., Cobianchi, F., Wilson, S.H. and Williams, K.R. (1988) J. Biol. Chem. 263, 3307-3313.
20. Kumar, A., Casas-Finet, J.R., Luneau, C.J., Karpel, R.L., Merrill, B.M., Wiliams, K.R. and Wilson, S.H. (1990) J Biol. Chem. 265, 17094-17100.
21. Nadler, S.G., Merrill, B.M., Roberts, W.J., Keating, K.M., Lisbin, M.J., Barnett, S.F., Wilson, S.H. and Williams, K.R. (1991) Biochemistry 30, 2968-2976.
22. Shamoo, Y., Abdul-Manan, N. Patten, A.M., Crawford, J.K, Pellegrini, M.C. and Williams, K.R. (1994) Biochemistry 33, 8272-8281.
23. Mayeda, A. and Krainer, A.R. (1992) Cell 68, 365-375.
24. Cáceras, J., Stamm, S., Helfman, D.M. and Krainer, A.R. (1994) Science 265, 1706-1709.
25. Yang, X., Bani, M-R., Lu, S-J., Rowan, S., Ben-David, Y. and Chabot, B. (1994) Proc. Natl. Acad. Sci. USA 91, 6924-6928.
26. Pontius, B.W. and Berg, J.M. (1992) J. Biol. Chem. 267, 13815-13818.
27. Kumar, A. and Wilson, S.H. (1990) Biochemistry 29, 10717-10722.
28. Munroe, S.H. and Dong, X.F. (1992) Proc. Natl. Acad. Sci. USA 89, 895-899.
29. Cobianchi, F., Calvo, C., Stoppini, M., Buvoli, M. and Riva, S. (1993) Nucleic Acids Res. 21, 949-955.
30. Swanson, M.S. and Dreyfuss, G. (1988) EMBO J. 11, 3519-3529.
31. Buvoli, M., Cobianchi, F., Biamonti, G. and Riva, S. (1990) Nucleic Acids. Res. 18, 6595-6600.
32. Ishikawa, F., Matunis, M.J., Dreyfuee, G. and Cech, T.R. (1993) Mol. Cell. Biol. 13, 4301-4310.
33. Burd, C.G. and Dreyfuss, G. (1994) EMBO J. 13, 1197-1204.
34. Hamilton, B.J., Nagy, E., Malter, J.S., Arrick, B.A. and Rigby, W.F.C. (1993) J. Biol. Chem. 268, 8881-8887.
35. Abdul-Manan, N., O'Malley, S.M. and Williams, K.R. (1996) Biochemistry 35, 3545-3554.
36. Cobianchi, R., Karpel, R.L., Williams, K.R., Notario, V. and Wilson, S.H. (1988) J. Biol. Chem. 263, 1063-1071.
37. Webster, K.R., Shamoo, A.Y., Konigsberg, W. and Spicer, E. (1991) Biotechnology 11, 658-661.
38. Mount, S.M. (1982) Nucleic Acids Res. 10, 459-473.
39. Bentley, D. and Rabbits, T., (1980) Nature 288, 730-733.
40. Pearson, A.M., Rich, A. and Krieger, M. (1993) J. Biol. Chem. 268, 354-355.
41. Williams, K.R. and Konigsberg, W.H. (1991) In Sauer, R. (ed.) Methods in Enzymology. Academic Press, Inc., New York Vol 208, pp 516-539.
42. Hockensmith, J.W., Kubasek, W.L., Vorachek, W.R. and von Hippel, P.H. (1986) J. Biol. Chem. 261, 3512-3518.
43. Zweib, C. and Brimacombe, R. (1979) Nucleic Acids Res. 6, 1775-1790.
44. Maly, P., Rinke, J., Ulmer, E., Zwieb, C. and Brimacombe, R. (1980) Biochemistry 19, 4179-4188.
45. Herschlag, D. (1995) J. Biol. Chem. 36, 20871-20874.