Proteome analysis of bacterial pathogens

Microbes and Infection

Volumn 3, Issue 10, 2001, Pages 831-840

  Jungblut, Peter R ^a  

^a MAX PLANCK INSTITUTE FOR INFECTION BIOLOGY   (Germany)

Author keywords

Antigens; Diagnosis; Genetic variability; Immunoproteome; Proteomics; Vaccine

Indexed keywords

ANTIGEN; PROTEOME;

ARTICLE; CAPILLARY CHROMATOGRAPHY; CONTROLLED STUDY; ELECTRONICS; GENETIC VARIABILITY; MASS SPECTROMETRY; NONHUMAN; PATHOGENICITY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN INTERACTION; TECHNOLOGY;

BACTERIA (MICROORGANISMS);

EID: 0034807582     PISSN: 12864579     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1286-4579(01)01441-1     Document Type: Review

References (107)

1. Method for determination of the amino acid sequence in peptides
2. A new method for sequencing DNA
3. DNA sequencing with chain-terminating inhibitors
4. High-resolution two-dimensional electrophoresis of proteins
5. Protein mapping by combined isoelectric focusing and electrophoresis in mouse tissues. A novel approach to testing for induced point mutations in mammals
6. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction
7. Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons
8. Electrospray ionization for mass spectrometry of large biomolecules
9. Die primäre Proteinstruktur von Stämmen des Tabakmosaikvirus. Aminosäuresequenzen des Proteins des TMV-Stammes dahlemense, Teil I, Hoppe-Seyler's Z
10. Ribosomal proteins VII: Two dimensional polyacrylamide gel electrophoresis for fingerprinting of ribosomal proteins
11. The structural basis of ribosome activity in peptide bond synthesis
12. The human protein index
13. Systematic analysis of the total proteins of a mammalian organism: Principles, problems and implications for sequencing the human genome
14. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: Procedure and some applications
15. Specific antiserum staining of two-dimensional electrophoretic patterns of human plasma proteins immobilized on nitrocellulose
16. Electroblotting onto activated glass: High efficiency preparation of proteins from analytical sodium dodecyl sulfate polyacrylamide gels for direct sequence analysis
17. Protein blotting on polybrene-coated glass-fiber sheets. A basis of acid hydrolysis and gas-phase sequencing of picomole quantities of protein previously separated on SDS-polyacrylamide gel
18. Identification of mouse brain proteins after two-dimensional electrophoresis and electroblotting by microsequence analysis and amino acid composition analysis
19. Identification of tissue proteins by amino acid analysis after purification by two-dimensional electrophoresis
20. Rapid identification of proteins by peptide mass fingerprinting
21. Error-tolerant identification of peptides in sequence databases by peptide sequence tags
22. The current state of two-dimensional electrophoresis with immobilized pH gradients
23. Two-dimensional electrophoresis of proteins: An updated protocol and implications for a functional analysis of the genome
24. Sequence analysis of proteins separated by polyacrylamide gel electrophoresis: Towards an integrated protein database
25. Protein analysis on a genomic scale
26. A strategy for founding a global lymphocyte proteinpaedia and gene catalogue
27. Progress with gene-product mapping of the Mollicutes: Mycoplasma genitalium
28. Resolution power of two-dimensional electrophoresis and identification of proteins from gels
29. Identification and characterization of heat shock protein 27 protein species in human myocardial 2-DE patterns
30. Genotypes and phenotypes
31. Diagnosis of the cellular states of microbial organisms using proteomics
32. Proteomics: Quantitative and physical mapping of cellular proteins
33. Comparative proteomics of microbial pathogens
34. Comparative proteome analysis of Mycobacterium tuberculosis and Mycobacterium bovis BCG strains: Towards functional genomics of microbial pathogens
35. Rapid protein display profiling of cancer progression directly from human tissue using a protein biochip
36. A molecular scanner to automate proteomic research and to display proteome images
37. Toward a clinical molecular scanner for proteome research: Parallel protein chemical processing before and during Western blot
38. The analysis of microbial proteomes: Strategies and data exploitation
39. Direct analysis of protein complexes using mass spectrometry
40. Simplification of complex mixtures for proteomic analysis: Reversible biotinylation of cysteinyl peptides
41. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
42. New desorption strategies for the mass spectrometric analysis of macromolecules
43. Protein microarrays for gene expression and antibody screening
44. Identification of in vivo substrates of the chaperonin GroEL
45. A novel genetic system to detect protein-protein interactions
46. The two-hybrid system: A method to identify and clone genes for proteins that interact with a protein of interest
47. The protein-protein interaction map of Helicobacter pylori
48. Comparative proteome analysis of Helicobacter pylori
49. From genome to proteome: Protein map of Haemophilus influenzae
50. Two-dimensional map of the proteome of Haemophilus influenzae
51. Towards a two-dimensional proteome map of Mycoplasma pneumoniae
52. Complementing genomics with proteomics: The membrane subproteome of Pseudomonas aeruginosa PAO1
53. Gene-protein database of Escherichia coli K-12, edition 6
54. A comparison of selected mRNA and protein abundances in human liver
55. Correlation between protein and mRNA abundance in yeast
56. Probing protein function using a combination of gene knockout and proteome analysis by mass spectrometry
57. Intraspecies variation in bacterial genomes: The need for a species genome concept
58. Analysis of the genetic diversity of Helicobacter pylori: The tale of two genomes
59. Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA
60. Molecular analysis of genetic differences between Mycobacterium bovis BCG and virulent M. bovis
61. Physical mapping of Mycobacterium bovis BCG pasteur reveals differences from the genome map of Mycobacterium tuberculosis H37Rv and from M. bovis
62. Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics
63. Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays
64. Comparative genomics of BCG vaccines by whole-genome DNA microarray
65. Identification of a novel protein antigen encoded by a Mycobacterium tuberculosis-specific RD 1 region gene
66. In search for a novel tuberculosis vaccine: Identification of proteins from Mycobacterium tuberculosis missing in attenuated Mycobacterium bovis BCG strains
67. Comprehensive detection of immunorelevant Borrelia burgdorferi antigens by two-dimensional electrophoresis
68. Two-dimensional gel electrophoresis and immunoblotting of Campylobacter pylori proteins
69. Molecular techniques for studying the epidemiology of infection by Helicobacter pylori
70. Clustering of clinical strains of Helicobacter pylori analyzed by two-dimensional electrophoresis
71. Proteomic, CONTIGS of Mycobacterium tuberculosis and Mycobacterium bovis (BCG) using novel immobilised pH gradients
72. Mapping and identification of Mycobacterium tuberculosis proteins by two-dimensional gel electrophoresis, microsequencing and immunodetection
73. Characterization of Chlamydia trachomatis l2-induced tyrosine-phosphorylated HeLa cell proteins by two-dimensional gel electrophoresis
74. Salmonella typhimurium invasion of epithelial cells: Role of induced host cell tyrosine protein phosphorylation
75. Listeria monocytogenes, an invasive bacterium, stimulates MAP kinase upon attachment to epithelial cells
76. Invasion of epithelial cells by Shigella flexneri induces tyrosine phosphorylation of cortactin by a pp60c-src-mediated signalling pathway
77. Translocation of Helicobacter pylori CagA into gastric epithelial cells by type IV secretion
78. Translocation of the Helicobacter pylori CagA protein in gastric epithelial cells by a type IV secretion apparatus
79. Apoptosis as a common bacterial virulence strategy
80. Identification of immunoreactive proteins of Chlamydia trachomatis by Western blot analysis of a two-dimensional electrophoresis map with patient sera
81. Vaccination against Lyme disease with recombinant Borrelia burgdorferi outer-surface lipoprotein A with adjuvant. Lyme Disease Vaccine Study Group
82. A vaccine consisting of recombinant Borrelia burgdorferi outer-surface protein A to prevent Lyme disease. Recombinant Outer-Surface Protein A Lyme Disease Vaccine Study Consortium
83. Identification of Borrelia burgdorferi sensu lato species in Europe
84. Characterization of a Helicobacter pylori vaccine candidate by proteome techniques
85. Naturally acquired human immune responses against Helicobacter pylori and implications for vaccine development
86. Identification of potential diagnostic and vaccine candidates of Helicobacter pylori by two-dimensional gel electrophoresis, sequence analysis, and serum profiling
87. Identification of immunodominant antigens from Helicobacter pylori and evaluation of their reactivities with sera from patients with different gastroduodenal pathologies
88. Vaccine development against infection with Helicobacter pylori
89. Characterization of peptides associated with the class I MHC molecule, HLA-A2.1
90. Identification of a peptide recognized by five melanoma specific human cytotoxic T-cell lines
91. The HLA-A*0201-restricted H-Y antigen contains a post-translationally modified cysteine that significantly affects T cell recognition
92. The application of proteomics in defining the T cell antigens of Mycobacterium tuberculosis
93. A proteomic analysis of erythromycin resistance in Streptococcus pneumoniae
94. mefE is necessary for the erythromycin-resistant M phenotype in Streptococcus pneumoniae
95. Mapping of Chlamydia trachomatis proteins by immobiline-polyacrylamide two-dimensional electrophoresis: Spot identification by N-terminal sequencing and immunoblotting
96. Characterisation of Haemophilus influenzae proteins by two-dimensional gel electrophoresis
97. Two-dimensional gel electrophoresis of Escherichia coli homogenates: The Escherichia coli SWISS-2DPAGE database
98. The proteome of Mycoplasma genitalium - Chaps-soluble component
99. Identifying the major proteome components of Haemophilus influenzae type-strain NCTC8143
100. Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12
101. Escherichia coli proteome analysis using the gene-protein database