-
1
-
-
0030001538
-
Use of aromatic amino acid residues to restrict the dynamics in the hydrophobic core of a designed helix-loop-helix dimer
-
Dolphin, G.T., Brive, L., Johansson, G. & Baltzer, L. (1996). Use of aromatic amino acid residues to restrict the dynamics in the hydrophobic core of a designed helix-loop-helix dimer. J. Am. Chem. Soc. 118, 11297-11298.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 11297-11298
-
-
Dolphin, G.T.1
Brive, L.2
Johansson, G.3
Baltzer, L.4
-
2
-
-
0024295240
-
Contribution of hydrophobic interactions to protein stability
-
Kellis, J.T., Jr., Nyberg, K., Sali, D. & Fersht, A.R. (1988). Contribution of hydrophobic interactions to protein stability. Nature 333, 784-786.
-
(1988)
Nature
, vol.333
, pp. 784-786
-
-
Kellis Jr., J.T.1
Nyberg, K.2
Sali, D.3
Fersht, A.R.4
-
3
-
-
0028608066
-
Redesigning the hydrophobic core of a four-helix bundle protein
-
Munson, M., O'Brien, R., Sturtevant, J.M. & Began, L. (1994). Redesigning the hydrophobic core of a four-helix bundle protein. Protein Sci. 3, 2015-2022.
-
(1994)
Protein Sci.
, vol.3
, pp. 2015-2022
-
-
Munson, M.1
O'Brien, R.2
Sturtevant, J.M.3
Began, L.4
-
4
-
-
0028968018
-
Studies on protein stability with T4 lysozyme
-
Matthews, B.W. (1995). Studies on protein stability with T4 lysozyme. Adv. Protein Chem. 46, 249-278.
-
(1995)
Adv. Protein Chem.
, vol.46
, pp. 249-278
-
-
Matthews, B.W.1
-
5
-
-
0025908265
-
The role of interna packing interaction in determining the structure and stability of a protein
-
Lim, W.A. & Sauer, R.T. (1991). The role of interna packing interaction in determining the structure and stability of a protein. J. Mol. Biol. 219, 359-376.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 359-376
-
-
Lim, W.A.1
Sauer, R.T.2
-
6
-
-
0027815614
-
An analysis of packing in the protein folding problem
-
Richards, F. & Lim, W. (1993). An analysis of packing in the protein folding problem. Quart. Rev. Biophys. 26, 423-498.
-
(1993)
Quart. Rev. Biophys.
, vol.26
, pp. 423-498
-
-
Richards, F.1
Lim, W.2
-
7
-
-
0026654252
-
Mutational studies of protein structures and their stabilities
-
Shortle, D. (1992). Mutational studies of protein structures and their stabilities. Quart. Rev. Biophys. 25, 205-250.
-
(1992)
Quart. Rev. Biophys.
, vol.25
, pp. 205-250
-
-
Shortle, D.1
-
8
-
-
0029863201
-
Sequence space, folding and protein design
-
Cordes, M.H.J., Davidson, A.R. & Sauer, R.T. (1996). Sequence space, folding and protein design. Curr. Opin. Struct. Biol. 6, 3-10.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 3-10
-
-
Cordes, M.H.J.1
Davidson, A.R.2
Sauer, R.T.3
-
9
-
-
0025101549
-
Theory for protein mutability and biogenesis
-
Lau, K. & Dill, K. (1990). Theory for protein mutability and biogenesis. Proc. Natl Acad. Sci. USA 87, 638-642.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 638-642
-
-
Lau, K.1
Dill, K.2
-
10
-
-
0014436758
-
Molecular pathology of human haemoglobin
-
Perutz, M. & Lehmann, H. (1968). Molecular pathology of human haemoglobin. Nature 219, 902-909.
-
(1968)
Nature
, vol.219
, pp. 902-909
-
-
Perutz, M.1
Lehmann, H.2
-
11
-
-
0033006220
-
Tolerance of a protein to multiple polar-to-hydrophobic surface substitutions
-
Cordes, M.H. & Sauer, R.T. (1999). Tolerance of a protein to multiple polar-to-hydrophobic surface substitutions. Protein Sci. 8, 318-325.
-
(1999)
Protein Sci.
, vol.8
, pp. 318-325
-
-
Cordes, M.H.1
Sauer, R.T.2
-
12
-
-
0027177971
-
Metal ion-dependent modulation of the dynamics of a designed protein
-
Handel, T.M., Williams, S.A. & DeGrado, W.F. (1993). Metal ion-dependent modulation of the dynamics of a designed protein. Science 261, 879-885.
-
(1993)
Science
, vol.261
, pp. 879-885
-
-
Handel, T.M.1
Williams, S.A.2
DeGrado, W.F.3
-
13
-
-
0027234766
-
Engineering of stable and fast-folding sequences of model proteins
-
Shakhnovich, E. & Gutin, A.M. (1993). Engineering of stable and fast-folding sequences of model proteins. Proc. Natl Acad. Sci. USA 90, 7195-7199.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 7195-7199
-
-
Shakhnovich, E.1
Gutin, A.M.2
-
14
-
-
0027438090
-
A new approach to the design of stable proteins
-
Shakhnovich, E.I. & Gutin, A.M. (1993). A new approach to the design of stable proteins. Protein Eng. 6, 793-800.
-
(1993)
Protein Eng.
, vol.6
, pp. 793-800
-
-
Shakhnovich, E.I.1
Gutin, A.M.2
-
15
-
-
0028174310
-
How does a protein fold?
-
Sali, A., Shakhnovich, E. & Karplus, M. (1994). How does a protein fold? Nature 369, 248-251.
-
(1994)
Nature
, vol.369
, pp. 248-251
-
-
Sali, A.1
Shakhnovich, E.2
Karplus, M.3
-
16
-
-
0028963362
-
Towards an outline of the topography of a realistic protein folding funnel
-
Onuchic, J.N., Wolynes, P.G., Luthey-Schulten, Z. & Socci, N.D. (1995). Towards an outline of the topography of a realistic protein folding funnel. Proc. Natl Acad. Sci. USA 92, 3626-3630.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 3626-3630
-
-
Onuchic, J.N.1
Wolynes, P.G.2
Luthey-Schulten, Z.3
Socci, N.D.4
-
17
-
-
1842298212
-
From Levinthal to pathways to funnels
-
Dill, K.A. & Chan, H.S. (1997). From Levinthal to pathways to funnels. Nat. Struct. Biol. 4, 10-19.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 10-19
-
-
Dill, K.A.1
Chan, H.S.2
-
18
-
-
0033527768
-
Folding of a model three-helix bundle protein: Athermodynamic and kinetic analysis
-
Zhou, Y. & Karplus, M. (1999). Folding of a model three-helix bundle protein: athermodynamic and kinetic analysis. J. Mol. Biol. 293, 917-951.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 917-951
-
-
Zhou, Y.1
Karplus, M.2
-
19
-
-
4243572706
-
Criterion that deterimines the foldability of proteins
-
Klimov, D.K. & Thirumalia, D. (1996). Criterion that deterimines the foldability of proteins. Phys. Rev. Lett. 76, 4070-4073.
-
(1996)
Phys. Rev. Lett.
, vol.76
, pp. 4070-4073
-
-
Klimov, D.K.1
Thirumalia, D.2
-
20
-
-
0031056829
-
Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis
-
Booth, D., et al., & Pepys, M.B. (1997). Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis. Nature 385, 787-793.
-
(1997)
Nature
, vol.385
, pp. 787-793
-
-
Booth, D.1
Pepys, M.B.2
-
21
-
-
0029157648
-
A de novo designed protein mimics the native state of natural proteins
-
Raleigh, D.P., Betz, S.F. & DeGrado, W.F. (1995). A de novo designed protein mimics the native state of natural proteins. J. Am. Chem. Soc. 117, 7558-7559.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 7558-7559
-
-
Raleigh, D.P.1
Betz, S.F.2
DeGrado, W.F.3
-
22
-
-
0031018393
-
De novo design of native proteins: Characterization of proteins intended to fold into antiparallel, ROP-like, four-helix bundles
-
Betz, S.F., Liebman, P.A. & DeGrado, W.F. (1997). De novo design of native proteins: characterization of proteins intended to fold into antiparallel, ROP-like, four-helix bundles. Biochemistry 36, 2450-2458.
-
(1997)
Biochemistry
, vol.36
, pp. 2450-2458
-
-
Betz, S.F.1
Liebman, P.A.2
DeGrado, W.F.3
-
23
-
-
0031746429
-
From coiled coils to small globular proteins: Design of a native-like three-helix bundle
-
Bryson, J.W., Desjarlais, J.R., Handel, T.M. & DeGrado, W.F. (1998). From coiled coils to small globular proteins: design of a native-like three-helix bundle. Protein Sci. 7, 1404-1414.
-
(1998)
Protein Sci.
, vol.7
, pp. 1404-1414
-
-
Bryson, J.W.1
Desjarlais, J.R.2
Handel, T.M.3
DeGrado, W.F.4
-
24
-
-
0028824042
-
Protein design: A hierarchic approach
-
Bryson, J.W., et al., & DeGrado, W.F. (1995). Protein design: a hierarchic approach. Science 270, 935-941.
-
(1995)
Science
, vol.270
, pp. 935-941
-
-
Bryson, J.W.1
DeGrado, W.F.2
-
25
-
-
0030793767
-
De novo protein design: Fully automated sequence selection
-
Dahiyat, B.I. & Mayo, S.L. (1997). De novo protein design: fully automated sequence selection. Science 278, 82-87.
-
(1997)
Science
, vol.278
, pp. 82-87
-
-
Dahiyat, B.I.1
Mayo, S.L.2
-
26
-
-
0032835617
-
De novo design and structura characterization of proteins and metalloproteins
-
DeGrado, W.F., Summa, C.M., Pavone, V., Nastri, F. & Lombardi, A. (1999). De novo design and structura characterization of proteins and metalloproteins. Annu. Rev. Biochem. 68, 779-819.
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 779-819
-
-
DeGrado, W.F.1
Summa, C.M.2
Pavone, V.3
Nastri, F.4
Lombardi, A.5
-
27
-
-
0030880591
-
Solution structure of α-t-α, a helical hairpin peptide of de novo design
-
Fezoui, Y., Connolly, P.J. & Osterhout, J.J. (1997). Solution structure of α-t-α, a helical hairpin peptide of de novo design. Protein Sci. 6, 1869-1877.
-
(1997)
Protein Sci.
, vol.6
, pp. 1869-1877
-
-
Fezoui, Y.1
Connolly, P.J.2
Osterhout, J.J.3
-
28
-
-
0031029551
-
Protein design: The choice of de novo sequences
-
Beasley, J.R. & Hecht, M.H. (1997). Protein design: the choice of de novo sequences. J. Biol. Chem. 272, 2031-2034.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 2031-2034
-
-
Beasley, J.R.1
Hecht, M.H.2
-
29
-
-
0026619394
-
Looking at proteins: Representations, folding, packing, and design
-
Biophysical Society National Lecture
-
Richardson, J., et al., & Surles, M.C. (1992). Looking at proteins: representations, folding, packing, and design. Biophysical Society National Lecture. Biophys. J. 63, 1186-1209.
-
(1992)
Biophys. J.
, vol.63
, pp. 1186-1209
-
-
Richardson, J.1
Surles, M.C.2
-
30
-
-
0032144119
-
Functionalization of designed folded polypeptides
-
Baltzer, L. (1998). Functionalization of designed folded polypeptides. Curr. Opin. Struct. Biol. 8, 466-470.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 466-470
-
-
Baltzer, L.1
-
31
-
-
0033135227
-
Computational protein design
-
Street, A. & Mayo, S. (1999). Computational protein design. Structure 7, R105-R109.
-
(1999)
Structure
, vol.7
-
-
Street, A.1
Mayo, S.2
-
32
-
-
0032518507
-
Proteins to order?
-
Regan, L. (1998). Proteins to order? Structure 6, 1-4.
-
(1998)
Structure
, vol.6
, pp. 1-4
-
-
Regan, L.1
-
33
-
-
0002682169
-
Local versus nonlocal interactions in protein folding and stability
-
Munoz, V. & Serrano, L. (1996). Local versus nonlocal interactions in protein folding and stability. Fold. Des. 1, R71-R77.
-
(1996)
Fold. Des.
, vol.1
-
-
Munoz, V.1
Serrano, L.2
-
34
-
-
0032876590
-
Uniquely folded mini-protein motifs
-
Imperial, B. & Ottesen, J. (1999). Uniquely folded mini-protein motifs. J. Pept. Res. 54, 177-184.
-
(1999)
J. Pept. Res.
, vol.54
, pp. 177-184
-
-
Imperial, B.1
Ottesen, J.2
-
35
-
-
0030886443
-
Rational protein design: Combining theory and experiment
-
Hellinga, H. (1997). Rational protein design: combining theory and experiment. Proc. Natl Acad. Sci. USA 94, 10015-10017.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 10015-10017
-
-
Hellinga, H.1
-
36
-
-
0002543810
-
Design and NMR analyses of compact, independently folded ββα motifs
-
Struthers, M., Ottesen, J.J. & Imperiali, B. (1998). Design and NMR analyses of compact, independently folded ββα motifs. Fold. Des. 3, 95-103.
-
(1998)
Fold. Des.
, vol.3
, pp. 95-103
-
-
Struthers, M.1
Ottesen, J.J.2
Imperiali, B.3
-
38
-
-
0025222978
-
A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids
-
O'Neil, K.T. & DeGrado, W.F. (1990). A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids. Science 250, 646-651.
-
(1990)
Science
, vol.250
, pp. 646-651
-
-
O'Neil, K.T.1
DeGrado, W.F.2
-
39
-
-
0029926150
-
Interhelical salt bridges, coiled-coil stability and specificity of dimerization
-
Lumb, K.J. & Kim, P.S. (1996). Interhelical salt bridges, coiled-coil stability and specificity of dimerization. Science 271, 1137-1138.
-
(1996)
Science
, vol.271
, pp. 1137-1138
-
-
Lumb, K.J.1
Kim, P.S.2
-
40
-
-
0031027211
-
α-helical protein assembly motifs
-
Kohn, W., Mant, C. & Hodges, R. (1997). α-helical protein assembly motifs. J. Biol. Chem. 272, 2583-2586.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 2583-2586
-
-
Kohn, W.1
Mant, C.2
Hodges, R.3
-
41
-
-
0029154811
-
Native-like and structurally characterized designed α-helical bundles
-
Betz, S.F., Bryson, J.W. & DeGrado, W.F. (1995). Native-like and structurally characterized designed α-helical bundles. Curr. Opin. Struct. Biol. 5, 457-463.
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 457-463
-
-
Betz, S.F.1
Bryson, J.W.2
DeGrado, W.F.3
-
42
-
-
79954515341
-
A de novo designed protein shows a thermally induced transition from a native to a molten globule-like state
-
Raleigh, D.P. & DeGrado, W.F. (1992). A de novo designed protein shows a thermally induced transition from a native to a molten globule-like state. J. Amer. Chem. Soc. 114, 10079-10081.
-
(1992)
J. Amer. Chem. Soc.
, vol.114
, pp. 10079-10081
-
-
Raleigh, D.P.1
DeGrado, W.F.2
-
44
-
-
0033974235
-
Hydrogen bonded cluster can specify the native state of a protein
-
Hill, R.B., Hong, J.-K. & DeGrado, W.F. (2000). Hydrogen bonded cluster can specify the native state of a protein. J. Am. Chem. Soc. 122, 746-747.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 746-747
-
-
Hill, R.B.1
Hong, J.-K.2
DeGrado, W.F.3
-
45
-
-
0024977331
-
Low-temperature unfolding of a mutant of phage T4 lysozyme. 1. Equilibrium studies
-
Chen, B.-I. & Schellman, J.A. (1989). Low-temperature unfolding of a mutant of phage T4 lysozyme. 1. Equilibrium studies. Biochemistry 28, 685-691.
-
(1989)
Biochemistry
, vol.28
, pp. 685-691
-
-
Chen, B.-I.1
Schellman, J.A.2
-
46
-
-
0023442217
-
Protein stability curves
-
Becktel, W. & Schellman, J. (1987). Protein stability curves. Biopolymers 26, 1859-1877.
-
(1987)
Biopolymers
, vol.26
, pp. 1859-1877
-
-
Becktel, W.1
Schellman, J.2
-
47
-
-
0027935843
-
The stability of yeast iso-1-cytochrome c as a function of pH and temperature
-
Cohen, D.S. & Pielak, G.J. (1994). The stability of yeast iso-1-cytochrome c as a function of pH and temperature. Protein Sci. 3, 1253-1260.
-
(1994)
Protein Sci.
, vol.3
, pp. 1253-1260
-
-
Cohen, D.S.1
Pielak, G.J.2
-
48
-
-
0029114703
-
The heat capacity of proteins
-
Gomez, J., Hilser, V., Xie, D. & Freire, E. (1995). The heat capacity of proteins. Proteins 22, 404-412.
-
(1995)
Proteins
, vol.22
, pp. 404-412
-
-
Gomez, J.1
Hilser, V.2
Xie, D.3
Freire, E.4
-
49
-
-
0024417964
-
The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure
-
Kuwajima, K. (1989). The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure. Proteins 6, 87-103.
-
(1989)
Proteins
, vol.6
, pp. 87-103
-
-
Kuwajima, K.1
-
50
-
-
0025212107
-
Evidence for a molten globule state as a general intermediates in protein folding
-
Ptitsyn, O.B., Pain, R.H., Semisotnov, G.V., Zerovnik, E. & Razgulyaer, O.L. (1990). Evidence for a molten globule state as a general intermediates in protein folding. FEBS Lett 262, 20-24.
-
(1990)
FEBS Lett
, vol.262
, pp. 20-24
-
-
Ptitsyn, O.B.1
Pain, R.H.2
Semisotnov, G.V.3
Zerovnik, E.4
Razgulyaer, O.L.5
-
51
-
-
0029653841
-
Design of two-stranded and three-stranded coiled coil peptides
-
Betz, S., Fairman, R., O'Neil, K., Lear, J., & DeGrado, W. (1995). Design of two-stranded and three-stranded coiled coil peptides. Proc. of the Royal Society 348, 81-88.
-
(1995)
Proc. of the Royal Society
, vol.348
, pp. 81-88
-
-
Betz, S.1
Fairman, R.2
O'Neil, K.3
Lear, J.4
DeGrado, W.5
-
52
-
-
0027756896
-
A switch between two-, three-, and four-stranded coiled coils
-
Harbury, P.B., Zhang, T., Kim, P.S. & Alber, T. (1993). A switch between two-, three-, and four-stranded coiled coils. Science 262, 1401-1407.
-
(1993)
Science
, vol.262
, pp. 1401-1407
-
-
Harbury, P.B.1
Zhang, T.2
Kim, P.S.3
Alber, T.4
-
53
-
-
16944366990
-
Buried polar residues and structural specificity in the GCN4 leucine zipper
-
Gonzalez, L., Jr., Woolfson, D.N. & Alber, T. (1996). Buried polar residues and structural specificity in the GCN4 leucine zipper. Nat. Struct. Biol. 3, 1011-1018.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 1011-1018
-
-
Gonzalez Jr., L.1
Woolfson, D.N.2
Alber, T.3
-
54
-
-
0032497322
-
A buried polar interaction can direct the relative orientation of helices in a coiled coil
-
Oakley, M. & Kim, P. (1998). A buried polar interaction can direct the relative orientation of helices in a coiled coil. Biochemistry 37, 12603-12610.
-
(1998)
Biochemistry
, vol.37
, pp. 12603-12610
-
-
Oakley, M.1
Kim, P.2
-
55
-
-
0028270634
-
Kinetics of protein folding, a lattice model study of the requirements for folding to the native state
-
Sali, A., Shakhnovich, E. & Karplus, M. (1994). Kinetics of protein folding, a lattice model study of the requirements for folding to the native state. J. Mol. Biol. 235, 1614-1636.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1614-1636
-
-
Sali, A.1
Shakhnovich, E.2
Karplus, M.3
-
56
-
-
0028963219
-
A test of lattice protein folding algorithms
-
Vue, K., et al., & Dill, K.A. (1995). A test of lattice protein folding algorithms. Proc. Nat/Acad. Sci. USA 92, 325-329.
-
(1995)
Proc. Nat/Acad. Sci. USA
, vol.92
, pp. 325-329
-
-
Vue, K.1
Dill, K.A.2
-
57
-
-
0034635349
-
Statistical theory of combinatorial libraries of folding proteins: Energetic discrimination of a target structure
-
Zou, J. & Saven, J. (2000). Statistical theory of combinatorial libraries of folding proteins: energetic discrimination of a target structure. J. Mol. Biol. 296, 281-294.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 281-294
-
-
Zou, J.1
Saven, J.2
-
58
-
-
0032562654
-
Position dependence of non-polar amino acid intrinsic helical propensities
-
Petukhov, M., Munoz, V., Yumoto, N., Yoshikawa, S. & Serrano, L. (1998). Position dependence of non-polar amino acid intrinsic helical propensities. J. Mol. Biol. 278, 279-289.
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 279-289
-
-
Petukhov, M.1
Munoz, V.2
Yumoto, N.3
Yoshikawa, S.4
Serrano, L.5
-
59
-
-
0030858237
-
Helix propensities are identical in proteins and peptides
-
Myers, J.K., Pace, C.N. & Scholtz, J.M. (1997). Helix propensities are identical in proteins and peptides. Biochemistry 36, 10923-10929.
-
(1997)
Biochemistry
, vol.36
, pp. 10923-10929
-
-
Myers, J.K.1
Pace, C.N.2
Scholtz, J.M.3
-
60
-
-
0030787855
-
Partial volumes and compressibilities of extended polypeptide chains in aqueous solution: Additivity scheme and implication of protein unfolding at normal and high pressure
-
Kharakoz, D. (1997). Partial volumes and compressibilities of extended polypeptide chains in aqueous solution: additivity scheme and implication of protein unfolding at normal and high pressure. J. Mol. Biol. 36, 10276-10285.
-
(1997)
J. Mol. Biol.
, vol.36
, pp. 10276-10285
-
-
Kharakoz, D.1
-
61
-
-
0030844740
-
A designed buried salt bridge in a heterodimeric coiled coil
-
Schneider, J.P., Lear, J.D. & DeGrado, W.F. (1997). A designed buried salt bridge in a heterodimeric coiled coil. J. Am. Chem. Soc. 119, 5742-5743.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 5742-5743
-
-
Schneider, J.P.1
Lear, J.D.2
DeGrado, W.F.3
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