-
1
-
-
0025104478
-
Tertiary structural constraints on protein evolutionary diversity: Templates, key residues and structure prediction
-
Overington, J.P., Johnson, M.S., Sali, A. & Blundell, T.L. (1990). Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction. Proc. Roy. Soc. Lond. B241, 132-145.
-
(1990)
Proc. Roy. Soc. Lond.
, vol.B241
, pp. 132-145
-
-
Overington, J.P.1
Johnson, M.S.2
Sali, A.3
Blundell, T.L.4
-
2
-
-
0027293521
-
Molecular recognition in protein families: A database of aligned three-dimensional structures of related proteins
-
Overington, J.P., et al., & Blundell, T.L. (1993). Molecular recognition in protein families: a database of aligned three-dimensional structures of related proteins. Biochem. Soc. Trans. 21, 597-604.
-
(1993)
Biochem. Soc. Trans.
, vol.21
, pp. 597-604
-
-
Overington, J.P.1
Blundell, T.L.2
-
3
-
-
0017616224
-
The taxonomy of protein structure
-
Rossmann, M.G. & Argos, P. (1977). The taxonomy of protein structure. J. Mol. Biol. 109, 99-129.
-
(1977)
J. Mol. Biol.
, vol.109
, pp. 99-129
-
-
Rossmann, M.G.1
Argos, P.2
-
4
-
-
0017387723
-
β-sheet topology and the relatedness of proteins
-
Richardson, J.S. (1977). β-sheet topology and the relatedness of proteins. Nature 268, 495-500.
-
(1977)
Nature
, vol.268
, pp. 495-500
-
-
Richardson, J.S.1
-
5
-
-
0027325129
-
Families and the structural relatedness among globular proteins
-
Yee, D.P. & Dill, K.A. (1993). Families and the structural relatedness among globular proteins. Protein Sci. 2, 884-899.
-
(1993)
Protein Sci.
, vol.2
, pp. 884-899
-
-
Yee, D.P.1
Dill, K.A.2
-
6
-
-
0028290005
-
Parser for protein folding units
-
Holm, L. & Sander C. (1994). Parser for protein folding units. Proteins 19, 256-268.
-
(1994)
Proteins
, vol.19
, pp. 256-268
-
-
Holm, L.1
Sander, C.2
-
7
-
-
0028292461
-
Biological meaning, statistical significance, and classification of local spatial similarities in non-homologous proteins
-
Alexandrov, N.N. & Go, N. (1994). Biological meaning, statistical significance, and classification of local spatial similarities in non-homologous proteins. Protein Sci. 3, 866-875.
-
(1994)
Protein Sci.
, vol.3
, pp. 866-875
-
-
Alexandrov, N.N.1
Go, N.2
-
8
-
-
0028593509
-
Protein superfamilies and domain superfolds
-
Orengo, C.A., Jones, D.T. & Thornton, J.M. (1994). Protein superfamilies and domain superfolds. Nature 372, 631-634.
-
(1994)
Nature
, vol.372
, pp. 631-634
-
-
Orengo, C.A.1
Jones, D.T.2
Thornton, J.M.3
-
9
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A.G., Brenner, S.E., Hubbard, T. & Chothia, C. (1995). SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
10
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L. & Sander, C. (1993). Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233, 123-138.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
11
-
-
33645850956
-
The construction and use of databases of protein domain topologies and templates
-
Sowdhamini, R., Rufino, S.D. & Blundell, T.L. (1994). The construction and use of databases of protein domain topologies and templates. CHEMTRACTS - Biochem. Mol. Biol. 5, 291-306.
-
(1994)
CHEMTRACTS - Biochem. Mol. Biol.
, vol.5
, pp. 291-306
-
-
Sowdhamini, R.1
Rufino, S.D.2
Blundell, T.L.3
-
12
-
-
0028218683
-
Modular arrangement of proteins as inferred from analysis of homology
-
Sonnhammer, E. & Kahn, D. (1994). Modular arrangement of proteins as inferred from analysis of homology. Protein Sci. 3, 482-492.
-
(1994)
Protein Sci.
, vol.3
, pp. 482-492
-
-
Sonnhammer, E.1
Kahn, D.2
-
13
-
-
0015597839
-
Nucleation, rapid folding and globular intrachain regions in proteins
-
Wetlaufer, D.B. (1973). Nucleation, rapid folding and globular intrachain regions in proteins. Proc. Natl. Acad. Sci. USA 70, 697-701.
-
(1973)
Proc. Natl. Acad. Sci. USA
, vol.70
, pp. 697-701
-
-
Wetlaufer, D.B.1
-
14
-
-
0017439842
-
Structural rules for globular proteins
-
Schulz, G.E. (1977). Structural rules for globular proteins. Angew. Chem. Int. Edit. 16, 23-33.
-
(1977)
Angew. Chem. Int. Edit.
, vol.16
, pp. 23-33
-
-
Schulz, G.E.1
-
15
-
-
0025350086
-
An investigation of oligopeptides linking domains in protein tertiary structures and possible candidates for general gene fusion
-
Argos, P. (1990). An investigation of oligopeptides linking domains in protein tertiary structures and possible candidates for general gene fusion. J. Mol. Biol. 211, 943-958.
-
(1990)
J. Mol. Biol.
, vol.211
, pp. 943-958
-
-
Argos, P.1
-
16
-
-
0018270134
-
The tree structural organisation of proteins
-
Crippen, G.M. (1978). The tree structural organisation of proteins. J. Mol. Biol. 126, 315-332.
-
(1978)
J. Mol. Biol.
, vol.126
, pp. 315-332
-
-
Crippen, G.M.1
-
17
-
-
0018782641
-
Hierarchical organisation of domains in globular proteins
-
Rose, G.D. (1979). Hierarchical organisation of domains in globular proteins. J. Mol. Biol. 134, 447-470.
-
(1979)
J. Mol. Biol.
, vol.134
, pp. 447-470
-
-
Rose, G.D.1
-
18
-
-
0019860994
-
Correlation of DNA exonic regions with protein structural units in hemoglobin
-
Go, M. (1981). Correlation of DNA exonic regions with protein structural units in hemoglobin. Nature 291, 90-92.
-
(1981)
Nature
, vol.291
, pp. 90-92
-
-
Go, M.1
-
19
-
-
0019877668
-
Location of structural domains in proteins
-
Wodak, S.J. & Janin, J. (1981). Location of structural domains in proteins. Biochemistry 20, 6544-6553.
-
(1981)
Biochemistry
, vol.20
, pp. 6544-6553
-
-
Wodak, S.J.1
Janin, J.2
-
20
-
-
0023055758
-
Compact units in proteins
-
Zehfus, M.H. & Rose, G.D. (1986). Compact units in proteins. Biochemistry 25, 5759-5765.
-
(1986)
Biochemistry
, vol.25
, pp. 5759-5765
-
-
Zehfus, M.H.1
Rose, G.D.2
-
21
-
-
0028937153
-
A procedure for detecting structural domains in proteins
-
Swindells, M.B. (1995). A procedure for detecting structural domains in proteins. Protein Sci. 4, 103-112.
-
(1995)
Protein Sci.
, vol.4
, pp. 103-112
-
-
Swindells, M.B.1
-
22
-
-
0028891784
-
Identification and analysis of domains in proteins
-
Islam, S.A., Luo, J. & Sternberg, J.E. (1995). Identification and analysis of domains in proteins. Protein Eng. 8, 513-525.
-
(1995)
Protein Eng.
, vol.8
, pp. 513-525
-
-
Islam, S.A.1
Luo, J.2
Sternberg, J.E.3
-
23
-
-
0028943588
-
Continuous and discontinuous domains - An algorithm for the automatic generation of reliable protein domain definitions
-
Siddiqui, A.S. & Barton, G.J. (1995). Continuous and discontinuous domains - an algorithm for the automatic generation of reliable protein domain definitions. Protein Sci. 4, 872-884.
-
(1995)
Protein Sci.
, vol.4
, pp. 872-884
-
-
Siddiqui, A.S.1
Barton, G.J.2
-
24
-
-
0029159748
-
Rigid domains in proteins: An algorithmic approach to their identification
-
Nichols, W.L., Rose, G.D., Eyck, L.F.T. & Zimm, B.H. (1995). Rigid domains in proteins: an algorithmic approach to their identification. Proteins 23, 38-48.
-
(1995)
Proteins
, vol.23
, pp. 38-48
-
-
Nichols, W.L.1
Rose, G.D.2
Eyck, L.F.T.3
Zimm, B.H.4
-
25
-
-
0028914725
-
An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins
-
Sowdhamini, R. & Blundell, T.L. (1995). An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins. Protein Sci. 4, 506-520.
-
(1995)
Protein Sci.
, vol.4
, pp. 506-520
-
-
Sowdhamini, R.1
Blundell, T.L.2
-
26
-
-
0016345760
-
Chemical and biological evolution of a nucleotide-binding protein
-
Rossmann, M.G., Moras, D. & Olsen, K.W. (1974). Chemical and biological evolution of a nucleotide-binding protein. Nature 250, 194-199.
-
(1974)
Nature
, vol.250
, pp. 194-199
-
-
Rossmann, M.G.1
Moras, D.2
Olsen, K.W.3
-
27
-
-
0025649353
-
A rapid method of protein structure alignment
-
Orengo, C.A. & Taylor, W.R. (1990). A rapid method of protein structure alignment. J. Theor. Biol. 147, 517-551.
-
(1990)
J. Theor. Biol.
, vol.147
, pp. 517-551
-
-
Orengo, C.A.1
Taylor, W.R.2
-
28
-
-
0025317502
-
The definition of topological equivalence in homologous and analogous structures: A procedure involving a comparison of local properties and relationships
-
Sali, A. & Blundell, T.L. (1990). The definition of topological equivalence in homologous and analogous structures: a procedure involving a comparison of local properties and relationships. J. Mol. Biol. 212, 403-428.
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 403-428
-
-
Sali, A.1
Blundell, T.L.2
-
29
-
-
0025275776
-
Use of techniques derived from graph theory to compare secondary structure motifs in proteins
-
Mitchell, E.M., Artymiuk, P.J., Rice, D.W. & Willett, P. (1989). Use of techniques derived from graph theory to compare secondary structure motifs in proteins. J. Mol. Biol. 212, 151-166.
-
(1989)
J. Mol. Biol.
, vol.212
, pp. 151-166
-
-
Mitchell, E.M.1
Artymiuk, P.J.2
Rice, D.W.3
Willett, P.4
-
30
-
-
0026759751
-
Fast structure alignment for protein databank searching
-
Orengo, C.A., Brown, N.P. & Taylor, W.R. (1992). Fast structure alignment for protein databank searching. Proteins 14, 139-167.
-
(1992)
Proteins
, vol.14
, pp. 139-167
-
-
Orengo, C.A.1
Brown, N.P.2
Taylor, W.R.3
-
31
-
-
0028373667
-
Structure-based identification and clustering of protein families and superfamilies
-
Rufino, S.D. & Blundell, T.L. (1994). Structure-based identification and clustering of protein families and superfamilies. J. Computer-Aided Mol. Des. 8, 5-27.
-
(1994)
J. Computer-Aided Mol. Des.
, vol.8
, pp. 5-27
-
-
Rufino, S.D.1
Blundell, T.L.2
-
32
-
-
0021760859
-
A fast method of comparing protein structure
-
Murthy, M.R.N. (1984). A fast method of comparing protein structure. FEBS Lett. 168, 97-102.
-
(1984)
FEBS Lett.
, vol.168
, pp. 97-102
-
-
Murthy, M.R.N.1
-
33
-
-
33645846538
-
Searching techniques for tertiary structures of proteins in the protein data bank
-
Colier, H., ed., Infonortics Ltd., Calne
-
Artymiuk, P.J., Grindley, H.M., Rice, D.W., Ujah, E.C. & Willett, P. (1991). Searching techniques for tertiary structures of proteins in the protein data bank. In Proceedings of the 1991 Chemical Information Conference (Colier, H., ed.), pp. 91-106, Infonortics Ltd., Calne.
-
(1991)
Proceedings of the 1991 Chemical Information Conference
, pp. 91-106
-
-
Artymiuk, P.J.1
Grindley, H.M.2
Rice, D.W.3
Ujah, E.C.4
Willett, P.5
-
34
-
-
0026553106
-
3-Dimensional structural resemblance between leucine aminopeptidase and carboxypeptidase-as revealed by graph theoretical techniques
-
Artymiuk, P.J., Grindley, H.M., Park, J.E., Rice, D.W. & Willett, P. (1992). 3-Dimensional structural resemblance between leucine aminopeptidase and carboxypeptidase-as revealed by graph theoretical techniques. FEBS Lett. 303, 48-52.
-
(1992)
FEBS Lett.
, vol.303
, pp. 48-52
-
-
Artymiuk, P.J.1
Grindley, H.M.2
Park, J.E.3
Rice, D.W.4
Willett, P.5
-
35
-
-
0027918137
-
Alpha-fold plus beta-fold revisited - Some favored motifs
-
Orengo, C.A. & Thornton, J.M. (1993). Alpha-fold plus beta-fold revisited - some favored motifs. Structure 1, 105-120.
-
(1993)
Structure
, vol.1
, pp. 105-120
-
-
Orengo, C.A.1
Thornton, J.M.2
-
36
-
-
0000454088
-
Recurring structural motifs in proteins with different functions
-
Orengo, C.A., Flores, T.P., Jones, D.T., Taylor, W.R. & Thornton, J.M. (1993). Recurring structural motifs in proteins with different functions. Curr. Biol. 3, 131-139.
-
(1993)
Curr. Biol.
, vol.3
, pp. 131-139
-
-
Orengo, C.A.1
Flores, T.P.2
Jones, D.T.3
Taylor, W.R.4
Thornton, J.M.5
-
37
-
-
0027220647
-
Identification and classification of protein fold families
-
Orengo, C.A., Flores, T.P., Taylor, W.R. & Thornton, J.M. (1993). Identification and classification of protein fold families. Protein Eng. 6, 485-500.
-
(1993)
Protein Eng.
, vol.6
, pp. 485-500
-
-
Orengo, C.A.1
Flores, T.P.2
Taylor, W.R.3
Thornton, J.M.4
-
38
-
-
0021881956
-
Myxococcus-xanthus spore coat protein-s may have a similar structure to vertebrate lens beta-gamma-crystallins
-
Wistow, G., Summers, L. & Blundell, T.L. (1985). Myxococcus-xanthus spore coat protein-s may have a similar structure to vertebrate lens beta-gamma-crystallins. Nature 315, 771-773.
-
(1985)
Nature
, vol.315
, pp. 771-773
-
-
Wistow, G.1
Summers, L.2
Blundell, T.L.3
-
39
-
-
0028144369
-
Structure of pentameric human serum amyloid-P component
-
Emsley, J., et al., & Wood, S.P. (1994). Structure of pentameric human serum amyloid-P component. Nature 367, 338-345.
-
(1994)
Nature
, vol.367
, pp. 338-345
-
-
Emsley, J.1
Wood, S.P.2
-
40
-
-
0017843307
-
Structural evidence for gene duplication in the evolution of the acid proteases
-
Tang, J., James, M.N.G., Hsu, I.N., Jenkins, J.A. & Blundell, T.L. (1978). Structural evidence for gene duplication in the evolution of the acid proteases. Nature 271, 618-621.
-
(1978)
Nature
, vol.271
, pp. 618-621
-
-
Tang, J.1
James, M.N.G.2
Hsu, I.N.3
Jenkins, J.A.4
Blundell, T.L.5
-
41
-
-
0026595547
-
Domain flexibility in aspartic proteinases
-
Sali, A., Veerapandian, B., Cooper, J.B., Moss, D.S., Hofmann, T. & Blundell, T.L. (1992). Domain flexibility in aspartic proteinases. Prateins 12, 158-170.
-
(1992)
Prateins
, vol.12
, pp. 158-170
-
-
Sali, A.1
Veerapandian, B.2
Cooper, J.B.3
Moss, D.S.4
Hofmann, T.5
Blundell, T.L.6
-
42
-
-
0017411710
-
Protein Data Bank: A computer based archival file for macromolecular structures
-
Bernstein, F.C., et al., & Tasumi, M. (1977). Protein Data Bank: a computer based archival file for macromolecular structures. J. Mol. Biol. 112, 535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Tasumi, M.2
-
43
-
-
0027092678
-
Selection of a representative set of structures from the Brookhaven Protein Data Bank
-
Hobohm, U., Scharf, M., Schneider, R. & Sander, C. (1992). Selection of a representative set of structures from the Brookhaven Protein Data Bank. Protein Sci. 1, 409-417.
-
(1992)
Protein Sci.
, vol.1
, pp. 409-417
-
-
Hobohm, U.1
Scharf, M.2
Schneider, R.3
Sander, C.4
-
44
-
-
0020997912
-
Dictionary of protein secondary structure. Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W. & Sander, C. (1983). Dictionary of protein secondary structure. Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
45
-
-
0000461280
-
Confidence-limits on phylogenies - An approach using the bootstrap
-
Felsenstein, J. (1985). Confidence-limits on phylogenies - an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
47
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee, B. & Richards, F.M. (1971). The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 55, 379-400.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
48
-
-
0021422888
-
Energetic approach to the packing of alpha-helices. 2. General treatment of nonequivalent and nonregular helices
-
Chou, K.-C., Nemethy, G. & Scheraga, H.A. (1984). Energetic approach to the packing of alpha-helices. 2. General treatment of nonequivalent and nonregular helices. J. Am. Chem. Soc. 106, 3161-3170.
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 3161-3170
-
-
Chou, K.-C.1
Nemethy, G.2
Scheraga, H.A.3
-
49
-
-
0026513692
-
Orthogonal β-β motifs in proteins
-
Sowdhamini, R., Srinivasan, N., Ramakrishnan, C. & Balaram, P. (1992). Orthogonal β-β motifs in proteins. J. Mol. Biol. 223, 845-851.
-
(1992)
J. Mol. Biol.
, vol.223
, pp. 845-851
-
-
Sowdhamini, R.1
Srinivasan, N.2
Ramakrishnan, C.3
Balaram, P.4
-
50
-
-
84976668743
-
Algorithm 457: Finding all cliques of an undirected graph [H]
-
Bron, C. & Kerbosch, J. (1973). Algorithm 457: finding all cliques of an undirected graph [H]. J. Commun. Assoc. Comput. Machinery 16, 575-577.
-
(1973)
J. Commun. Assoc. Comput. Machinery
, vol.16
, pp. 575-577
-
-
Bron, C.1
Kerbosch, J.2
-
51
-
-
0027511808
-
Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm
-
Grindley, H.M., Artymiuk, P.J., Rice, D.W., & Willett, P. (1993). Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm. J. Mol. Biol. 229, 707-721.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 707-721
-
-
Grindley, H.M.1
Artymiuk, P.J.2
Rice, D.W.3
Willett, P.4
-
52
-
-
0009558195
-
Algorithms for computing evolutionary similarity measures with length independent gap penalties
-
Fredman, M.L. (1984). Algorithms for computing evolutionary similarity measures with length independent gap penalties. Bull. Math. Biol. 46, 553-566.
-
(1984)
Bull. Math. Biol.
, vol.46
, pp. 553-566
-
-
Fredman, M.L.1
-
53
-
-
0027609916
-
SETOR - Hardware-lighted 3-dimensional solid model representations of macromolecules
-
Evans, S.V. (1993). SETOR - hardware-lighted 3-dimensional solid model representations of macromolecules. J. Mol. Graphics 11, 134-138.
-
(1993)
J. Mol. Graphics
, vol.11
, pp. 134-138
-
-
Evans, S.V.1
-
54
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P.J. (1991). MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24, 946-950.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
55
-
-
0001433241
-
Knowledge-based modelling of homologous proteins. Part I: Three-dimensional frameworks derived from simultaneous superposition of multiple structures
-
Sutcliffe, M.J., Haneef, I., Carney, D. & Blundell, T.L. (1987). Knowledge-based modelling of homologous proteins. Part I: Three-dimensional frameworks derived from simultaneous superposition of multiple structures. Protein Eng. 1, 377-384.
-
(1987)
Protein Eng.
, vol.1
, pp. 377-384
-
-
Sutcliffe, M.J.1
Haneef, I.2
Carney, D.3
Blundell, T.L.4
|