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Volumn 2, Issue 1, 2000, Pages 26-38

Oligonucleotide scanning of native mRNAs in extracts predicts intracellular ribozyme efficiency: Ribozyme-mediated reduction of the murine DNA methyltransferase

Author keywords

Antisense; Cleavage site mapping; DNA methyltransferase 1; Epigenetic silencing; Gene therapy; Pol III promoter; Ribozyme

Indexed keywords

MURINAE;

EID: 0034223563     PISSN: 15250016     EISSN: None     Source Type: Journal    
DOI: 10.1006/mthe.2000.0091     Document Type: Article
Times cited : (28)

References (45)
  • 1
    • 0026651086 scopus 로고
    • Small catalytic RNAs
    • Symons, R. H. (1992). Small catalytic RNAs. Annu. Rev. Biochem. 61: 641-671.
    • (1992) Annu. Rev. Biochem. , vol.61 , pp. 641-671
    • Symons, R.H.1
  • 2
    • 0028347016 scopus 로고
    • AUA-cleaving hammerhead ribozymes: Attempted selection for improved cleavage
    • Nakamaye, K. L., and Eckstein, F. (1994). AUA-cleaving hammerhead ribozymes: Attempted selection for improved cleavage. Biochemistry 33: 1271-1277.
    • (1994) Biochemistry , vol.33 , pp. 1271-1277
    • Nakamaye, K.L.1    Eckstein, F.2
  • 3
    • 0028858581 scopus 로고
    • Chemical modification of hammerhead ribozymes. Catalytic activity and nuclease resistance
    • Beigelman, L., et al. (1995). Chemical modification of hammerhead ribozymes. Catalytic activity and nuclease resistance. J. Biol. Chem. 270: 25702-25708.
    • (1995) J. Biol. Chem. , vol.270 , pp. 25702-25708
    • Beigelman, L.1
  • 4
    • 0030920066 scopus 로고    scopus 로고
    • Specific hammerhead ribozyme-mediated cleavage of mutant N-ras mRNA in vitro and ex vivo. Oligoribonucleotides as therapeutic agents
    • Scherr, M., Grez, M., Ganser, A., and Engels, J. W. (1997). Specific hammerhead ribozyme-mediated cleavage of mutant N-ras mRNA in vitro and ex vivo. Oligoribonucleotides as therapeutic agents. J. Biol. Chem. 272: 14304-14313.
    • (1997) J. Biol. Chem. , vol.272 , pp. 14304-14313
    • Scherr, M.1    Grez, M.2    Ganser, A.3    Engels, J.W.4
  • 5
    • 0030042588 scopus 로고    scopus 로고
    • Nuclease-resistant ribozymes decrease stromelysin mRNA levels in rabbit synovium following exogenous delivery to the knee joint
    • Flory, C. M., et al. (1996). Nuclease-resistant ribozymes decrease stromelysin mRNA levels in rabbit synovium following exogenous delivery to the knee joint. Proc. Natl. Acad. Sci. USA 93: 754-758.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 754-758
    • Flory, C.M.1
  • 6
    • 0028846708 scopus 로고
    • A synthetic, chemically modified ribozyme eliminates amelogenin, the major translation product in developing mouse enamel in vivo
    • Lyngstadaas, S. P., Risnes, S., Sproat, B. S., Thrane, P. S., and Prydz, H. P. (1995). A synthetic, chemically modified ribozyme eliminates amelogenin, the major translation product in developing mouse enamel in vivo. EMBO J. 14: 5224-5229.
    • (1995) EMBO J. , vol.14 , pp. 5224-5229
    • Lyngstadaas, S.P.1    Risnes, S.2    Sproat, B.S.3    Thrane, P.S.4    Prydz, H.P.5
  • 7
    • 0029160885 scopus 로고
    • Resistance to human immunodeficiency virus type 1 infection conferred by transduction of human peripheral blood lymphocytes with ribozyme, antisense, or polymeric trans-activation response element constructs
    • Sun, L. Q., et al. (1995). Resistance to human immunodeficiency virus type 1 infection conferred by transduction of human peripheral blood lymphocytes with ribozyme, antisense, or polymeric trans-activation response element constructs. Proc. Natl. Acad. Sci. USA 92: 7272-7276.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 7272-7276
    • Sun, L.Q.1
  • 8
    • 0028177915 scopus 로고
    • Reduced beta 2-microglobulin mRNA levels in transgenic mice expressing a designed hammerhead ribozyme
    • Larsson, S., et al. (1994). Reduced beta 2-microglobulin mRNA levels in transgenic mice expressing a designed hammerhead ribozyme. Nucleic Acids Res. 22: 2242-2248.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2242-2248
    • Larsson, S.1
  • 9
    • 0025363891 scopus 로고
    • Ribozymes as potential anti-HIV-1 therapeutic agents
    • Sarver, N., et al. (1990). Ribozymes as potential anti-HIV-1 therapeutic agents. Science 247: 1222-1225.
    • (1990) Science , vol.247 , pp. 1222-1225
    • Sarver, N.1
  • 10
    • 0029042615 scopus 로고
    • Ribozymes as human therapeutic agents
    • Christoffersen, R. E., and Marr, J. J. (1995). Ribozymes as human therapeutic agents. J. Med. Chem. 38: 2023-2037.
    • (1995) J. Med. Chem. , vol.38 , pp. 2023-2037
    • Christoffersen, R.E.1    Marr, J.J.2
  • 11
    • 0031309774 scopus 로고    scopus 로고
    • Therapeutic applications of catalytic antisense RNAs (ribozymes)
    • Rossi, J. J. (1997). Therapeutic applications of catalytic antisense RNAs (ribozymes). Ciba Found. Symp. 209: 195-204.
    • (1997) Ciba Found. Symp. , vol.209 , pp. 195-204
    • Rossi, J.J.1
  • 12
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews, D. H., Sabina, J., Zuker, M., and Turner, D. H. (1999). Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288: 911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 13
    • 0031574065 scopus 로고    scopus 로고
    • The effect of structure in a long target RNA on ribozyme cleavage efficiency
    • Campbell, T. B., McDonald, C. K., and Hagen, M. (1997). The effect of structure in a long target RNA on ribozyme cleavage efficiency. Nucleic Acids Res. 25: 4985-4993.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4985-4993
    • Campbell, T.B.1    McDonald, C.K.2    Hagen, M.3
  • 14
    • 0029938209 scopus 로고    scopus 로고
    • Potent antisense oligonucleotides to the human multidrug resistance-1 mRNA are rationally selected by mapping RNA-accessible sites with oligonucleotide libraries
    • Ho, S. P., et al. (1996). Potent antisense oligonucleotides to the human multidrug resistance-1 mRNA are rationally selected by mapping RNA-accessible sites with oligonucleotide libraries. Nucleic Acids Res. 24: 1901-1907.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 1901-1907
    • Ho, S.P.1
  • 15
    • 0028943217 scopus 로고
    • Selection of efficient cleavage sites in target RNAs by using a ribozyme expression library
    • Lieber, A., and Strauss, M. (1995). Selection of efficient cleavage sites in target RNAs by using a ribozyme expression library. Mol. Cell. Biol. 15: 540-551.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 540-551
    • Lieber, A.1    Strauss, M.2
  • 16
    • 0032533782 scopus 로고    scopus 로고
    • Rapid determination and quantitation of the accessibility to native RNAs by antisense oligodeoxynucleotides in murine cell extracts
    • Scherr, M., and Rossi, J. J. (1998). Rapid determination and quantitation of the accessibility to native RNAs by antisense oligodeoxynucleotides in murine cell extracts. Nucleic Acids Res. 26: 5079-5085.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 5079-5085
    • Scherr, M.1    Rossi, J.J.2
  • 17
    • 0028355964 scopus 로고
    • Facilitation of hammerhead ribozyme catalysis by the nucleocapsid protein of HIV-1 and the heterogeneous nuclear ribonucleoprotein A1
    • Bertrand, E. L., and Rossi, J. J. (1994). Facilitation of hammerhead ribozyme catalysis by the nucleocapsid protein of HIV-1 and the heterogeneous nuclear ribonucleoprotein A1. EMBO J. 13: 2904-2912.
    • (1994) EMBO J. , vol.13 , pp. 2904-2912
    • Bertrand, E.L.1    Rossi, J.J.2
  • 18
    • 0028142843 scopus 로고
    • An RNA chaperone activity of non-specific RNA binding proteins in hammerhead ribozyme catalysis
    • published erratum appears in EMBO J. 13: 3926, 1994
    • Herschlag, D., Khosla, M., Tsuchihashi, Z., and Karpel, R. L. (1994). An RNA chaperone activity of non-specific RNA binding proteins in hammerhead ribozyme catalysis [published erratum appears in EMBO J. 13: 3926, 1994]. EMBO J. 13: 2913-2924.
    • (1994) EMBO J. , vol.13 , pp. 3926
    • Herschlag, D.1    Khosla, M.2    Tsuchihashi, Z.3    Karpel, R.L.4
  • 19
    • 0026708177 scopus 로고
    • Targeted mutation of the DNA methyl-transferase gene results in embryonic lethality
    • Li, E., Bestor, T. H., and Jaenisch, R. (1992). Targeted mutation of the DNA methyl-transferase gene results in embryonic lethality. Cell 69: 915-926.
    • (1992) Cell , vol.69 , pp. 915-926
    • Li, E.1    Bestor, T.H.2    Jaenisch, R.3
  • 20
    • 0026653420 scopus 로고
    • The essentials of DNA methylation
    • Bird, A. (1992). The essentials of DNA methylation. Cell 70: 5-8.
    • (1992) Cell , vol.70 , pp. 5-8
    • Bird, A.1
  • 22
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
    • Walsh, C. P., Chaillet, J. R., and Bestor, T. H. (1998). Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat. Genet. 20: 116-117.
    • (1998) Nat. Genet. , vol.20 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 23
    • 0020986251 scopus 로고
    • Methylcytosine, gene regulation, and cancer
    • Riggs, A. D., and Jones, P. A. (1983). Methylcytosine, gene regulation, and cancer. Adv. Cancer Res. 40: 1-30.
    • (1983) Adv. Cancer Res. , vol.40 , pp. 1-30
    • Riggs, A.D.1    Jones, P.A.2
  • 24
    • 0032960181 scopus 로고    scopus 로고
    • Cancer epigenetics comes of age
    • Jones, P. A., and Laird, P. W. (1999). Cancer epigenetics comes of age. Nat. Genet. 21: 163-167.
    • (1999) Nat. Genet. , vol.21 , pp. 163-167
    • Jones, P.A.1    Laird, P.W.2
  • 25
    • 0030846298 scopus 로고    scopus 로고
    • Tying it all together: Epigenetics, genetics, cell cycle, and cancer
    • Baylin, S. B. (1997). Tying it all together: Epigenetics, genetics, cell cycle, and cancer. Science 277: 1948-1949.
    • (1997) Science , vol.277 , pp. 1948-1949
    • Baylin, S.B.1
  • 26
    • 0028074299 scopus 로고
    • Dna methylation and cancer
    • Laird, P. W., and Jaenisch, R. (1994). DNA methylation and cancer. Hum. Mol. Genet. 3: 1487-1495.
    • (1994) Hum. Mol. Genet. , vol.3 , pp. 1487-1495
    • Laird, P.W.1    Jaenisch, R.2
  • 27
    • 0032530174 scopus 로고    scopus 로고
    • Loss of transcriptional activity of a transgene is accompanied by dna methylation and histone deacetylation and is prevented by insulators
    • Pikaart, M. I., Recillas-Targa, F., and Felsenfeld, G. (1998). Loss of transcriptional activity of a transgene is accompanied by DNA methylation and histone deacetylation and is prevented by insulators. Genes Dev. 12: 2852-2862.
    • (1998) Genes Dev. , vol.12 , pp. 2852-2862
    • Pikaart, M.I.1    Recillas-Targa, F.2    Felsenfeld, G.3
  • 29
    • 0031860739 scopus 로고    scopus 로고
    • Cloning and characterization of a family of novel mammalian dna (cytosine-5) methyltransferases
    • Okano, M., Xie, S., and Li, E. (1998). Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases. Nat. Genet. 19: 219-220.
    • (1998) Nat. Genet. , vol.19 , pp. 219-220
    • Okano, M.1    Xie, S.2    Li, E.3
  • 30
    • 0031860739 scopus 로고    scopus 로고
    • Cloning and characterization of a family of novel mammalian dna (cytosine-5) methyltransferases
    • Okano, M., Xie, S. P., and Li, E. (1998). Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases. Nat. Genet. 19: 219-220.
    • (1998) Nat. Genet. , vol.19 , pp. 219-220
    • Okano, M.1    Xie, S.P.2    Li, E.3
  • 31
    • 0032769445 scopus 로고    scopus 로고
    • Cloning, expression and chromosome locations of the human dnmt3 gene family
    • Xie, S. P., et al. (1999). Cloning, expression and chromosome locations of the human DNMT3 gene family. Gene 236: 87-95.
    • (1999) Gene , vol.236 , pp. 87-95
    • Xie, S.P.1
  • 32
    • 0029847223 scopus 로고    scopus 로고
    • Complementation of methylation deficiency in embryonic stem cells by a dna methyl-transferase minigene
    • Tucker, K. L., Talbot, D., Lee, M. A., Leonhardt, H., and Jaenisch, R. (1996). Complementation of methylation deficiency in embryonic stem cells by a DNA methyl-transferase minigene. Proc. Natl. Acad. Sci. USA 93: 12920-12925.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 12920-12925
    • Tucker, K.L.1    Talbot, D.2    Lee, M.A.3    Leonhardt, H.4    Jaenisch, R.5
  • 33
    • 0032483988 scopus 로고    scopus 로고
    • A short dna methyl-transferase isoform restores methylation in vivo
    • Gaudet, F., Talbot, D., Leonhardt, H., and Jaenisch, R. (1998). A short DNA methyl-transferase isoform restores methylation in vivo. J. Biol. Chem. 273: 32725-32729.
    • (1998) J. Biol. Chem. , vol.273 , pp. 32725-32729
    • Gaudet, F.1    Talbot, D.2    Leonhardt, H.3    Jaenisch, R.4
  • 34
    • 0031961687 scopus 로고    scopus 로고
    • The hairpin ribozyme: Discovery, two-dimensional model, and development for gene therapy
    • Hampel, A. (1998). The hairpin ribozyme: Discovery, two-dimensional model, and development for gene therapy. Prog. Nucleic Acids Res. Mol. Biol. 58: 1-39.
    • (1998) Prog. Nucleic Acids Res. Mol. Biol. , vol.58 , pp. 1-39
    • Hampel, A.1
  • 35
    • 0025352187 scopus 로고
    • Advanced mammalian gene transfer: High titre retroviral vectors with multiple drug selection markers and a complementary helper-free packaging cell line
    • Morgenstern, J. P., and Land, H. (1990). Advanced mammalian gene transfer: High titre retroviral vectors with multiple drug selection markers and a complementary helper-free packaging cell line. Nucleic Acids Res. 18: 3587-3596.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3587-3596
    • Morgenstern, J.P.1    Land, H.2
  • 36
    • 0027370258 scopus 로고
    • Protein enhancement of hammerhead ribozyme catalysis
    • Tsuchihashi, Z., Khosla, M., and Herschlag, D. (1993). Protein enhancement of hammerhead ribozyme catalysis. Science 262: 99-102.
    • (1993) Science , vol.262 , pp. 99-102
    • Tsuchihashi, Z.1    Khosla, M.2    Herschlag, D.3
  • 37
    • 0027236954 scopus 로고
    • Production of high-titer helper-free retroviruses by transient transfection
    • Pear, W. S., Nolan, G. P., Scott, M. L., and Baltimore, D. (1993). Production of high-titer helper-free retroviruses by transient transfection. Proc. Natl. Acad. Sci. USA 90: 8392-8396.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 8392-8396
    • Pear, W.S.1    Nolan, G.P.2    Scott, M.L.3    Baltimore, D.4
  • 38
    • 0023392945 scopus 로고
    • High-efficiency transformation of mammalian cells by plasmid dna
    • Chen, C., and Okayama, H. (1987). High-efficiency transformation of mammalian cells by plasmid DNA. Mol. Cell. Biol. 7: 2745-2752.
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 2745-2752
    • Chen, C.1    Okayama, H.2
  • 40
    • 0024254164 scopus 로고
    • The intracisternal a-particle gene family: Structure and functional aspects
    • Kuff, E. L., and Lueders, K. K. (1988). The intracisternal A-particle gene family: Structure and functional aspects. Adv. Cancer Res. 51: 183-276.
    • (1988) Adv. Cancer Res. , vol.51 , pp. 183-276
    • Kuff, E.L.1    Lueders, K.K.2
  • 41
    • 0029995531 scopus 로고    scopus 로고
    • A humanized green fluorescent protein cdna adapted for high-level expression in mammalian cells
    • Zolutukhin, S., Potter, M., Hauswirth, W. W., Guy, J., and Muzyczka, N. (1996). A humanized green fluorescent protein cDNA adapted for high-level expression in mammalian cells. J. Virol. 70: 4646-4654.
    • (1996) J. Virol. , vol.70 , pp. 4646-4654
    • Zolutukhin, S.1    Potter, M.2    Hauswirth, W.W.3    Guy, J.4    Muzyczka, N.5
  • 42
    • 0030629511 scopus 로고    scopus 로고
    • Trna delivery systems for ribozymes
    • Perriman, R., and de Feyter, R. (1997). tRNA delivery systems for ribozymes. Methods Mol. Biol. 74: 393-402.
    • (1997) Methods Mol. Biol. , vol.74 , pp. 393-402
    • Perriman, R.1    De Feyter, R.2
  • 43
    • 0025201180 scopus 로고
    • Expression of chimeric trna-driven antisense transcripts renders nih 3t3 cells highly resistant to moloney murine leukemia virus replication
    • Sullenger, B. A., Lee, T. C., Smith, C. A., Lingers, G. E., and Gilboa, E. (1990). Expression of chimeric tRNA-driven antisense transcripts renders NIH 3T3 cells highly resistant to Moloney murine leukemia virus replication. Mol. Cell. Biol. 10: 6512-6523.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 6512-6523
    • Sullenger, B.A.1    Lee, T.C.2    Smith, C.A.3    Lingers, G.E.4    Gilboa, E.5
  • 44
    • 85031553296 scopus 로고
    • Determining the role of dna methylation in epigenetic programming of the genome
    • Univ. California, Davis, CA.
    • Tsark, W. (1995). Determining the role of DNA methylation in epigenetic programming of the genome. In Cell and Developmental Biology. Univ. California, Davis, CA.
    • (1995) Cell and Developmental Biology.
    • Tsark, W.1
  • 45
    • 0040279615 scopus 로고    scopus 로고
    • The use of cell extracts and antisense deoxyribo-oligonucleotides for identifying ribozyme cleavage sites on messenger rnas
    • (J. J. Rossi and L. A. Couture, Eds.), Horizon Press, Norfolk, UK.
    • Scherr, M., LeBon, J., Riggs, A. D., and Rossi, J. J. (1999). The use of cell extracts and antisense deoxyribo-oligonucleotides for identifying ribozyme cleavage sites on messenger RNAs. In Intracellular Ribozyme Applications: Principles and Protocols (J. J. Rossi and L. A. Couture, Eds.), pp. 47-56. Horizon Press, Norfolk, UK.
    • (1999) Intracellular Ribozyme Applications: Principles and Protocols , pp. 47-56
    • Scherr, M.1    LeBon, J.2    Riggs, A.D.3    Rossi, J.J.4


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