The effect of structure in a long target RNA on ribozyme cleavage efficiency

Nucleic Acids Research

Volumn 25, Issue 24, 1997, Pages 4985-4993

  Campbell, Thomas B ^a   McDonald, Cheryl K ^a   Hagen, Moira ^b  

^a UNIVERSITY OF COLORADO   (United States)

^b UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOZYME; RNA;

ARTICLE; BASE PAIRING; CHEMICAL MODIFICATION; CONTROLLED STUDY; HUMAN IMMUNODEFICIENCY VIRUS 1; PRIORITY JOURNAL; RNA CLEAVAGE; RNA STRUCTURE; STRUCTURE ACTIVITY RELATION;

BASE COMPOSITION; GENES, VIF; GENES, VPR; HIV-1; HUMANS; NUCLEIC ACID CONFORMATION; RNA, CATALYTIC; RNA, VIRAL; SUBSTRATE SPECIFICITY;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 0031574065     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.24.4985     Document Type: Article

References (47)

1. Uhlenbeck,O.C. (1987) Nature, 328, 596-600.
2. Haseloff,J. and Gerlach,W.L. (1988) Nature, 334, 585-591.
3. Ruffner,D.E., Dahm,S.C. and Uhlenbeck,O.C. (1988) Gene, 82, 31-41.
4. Pley,H.W., Flaherty,K.M. and McKay,D.B. (1994) Nature, 372, 68-74.
5. Tuschl,T., Gohlke,C., Jovin,T.M., Westhof,E. and Eckstein,F. (1994) Science, 266, 785-789.
6. Perriman,R., Delves,A. and Gerlach,W.L. (1992) Gene, 113, 157-163.
7. Herschlag,D. (1991) Proc. Natl. Acad. Sci. USA, 88, 6921-6925.
8. Hertel,K.J., Herschlag,D. and Uhlenbeck,O.C. (1996) EMBO J., 15, 3751-3757.
9. Sarver,N., Cantin,E.M., Chang,P.S., Zaia,J.A., Ladne,P.A., Stephens,D.A. and Rossi,J.J. (1990) Science, 247, 1222-1225.
10. Fedor,M.J. and Uhlenbeck,A.C. (1990) Proc. Natl. Acad. Sci. USA, 87, 1668-1672.
11. Heidenreich,O. and Eckstein,F. (1992) J. Biol. Chem., 267, 1904-1909.
12. Denman,R.B. (1993) Nucleic Acids Res., 21, 4119-4125.
13. Heidenreich,A., Benseler,F., Fahrenholz,A. and Eckstein,F. (1994) J. Biol. Chem., 269, 2131-2138.
14. Hendrix,C., Anne,J., Joris,B., Van Aerschot,A. and Herdewijn,P. (1996) Biochem. J., 314, 655-661.
15. Scarabino,D. and Tocchini-Valentini,G.P. (1996) FEBS Lett., 383, 185-190.
16. Birikh,K.R., Berlin,Y.A., Soreq,H. and Eckstein,F. (1997) RNA, 3, 429-437.
17. De Young,M.B., Kincade-Denker,J., Boehm,C.A., Riek,R.P., Mamone,J.A., McSwiggen,J.A. and Graham,R.M. (1994) Biochemistry, 33, 12127-12138.
18. Jarvis,T.C., Wincott,F.E., Alby,L.J., McSwiggen,J.A., Beigelman,L., Gustofson,J., DiRenzo,A., Levy,K., Arthur,M., Matulic-Adamic,J., et al. (1996) J. Biol. Chem., 271, 29107-29112.
19. Dropulic,B. and Jeang,K.T. (1994) Antisense Res. Dev., 4, 217-221.
20. Lieber,A. and Strauss,M. (1995) Mol. Cell. Biol., 15, 540-551.
21. Xing,Z. and Whitton,J.L. (1992) J. Virol., 66, 1361-1369.
22. Christoffersen,R.E., McSwiggen,J. and Konings,D. (1994) J. Mol. Struct. (Theochem)., 311, 273-284.
23. Wincott,F., DiRenzo,A., Shaffer,C., Grimm,S., Tracz,D., Workman,C., Sweedler,D., Gonzales,C., Scaringe,S. and Usman,N. (1995) Nucleic Acids Res., 23, 2677-2684.
24. Lingner,J. and Keller,W. (1993) Nucleic Acids Res., 21, 2917-2920.
25. Mathews,D.H., Banerjee,A.R., Luan,D.D., Eickbush,T.H. and Tumer,D.H. (1997) RNA, 3, 1-16.
26. Myers,G., Korber,B., Berzofsky,J.A., Smith,R.F. and Pavlakis,G.N. (1992) Human Retroviruses and AIDS 1992. Theoretical Biology and Biophysics, Los Alamos, NM
27. Hertel,K.J., Herechlag,D. and Uhlenbeck,O.C. (1994) Biochemistry, 33, 3374-3385.
28. Porschke,D. and Eigen,M. (1971) J. Mol. Biol. 62, 361-381.
29. Porschke,D. Uhlenbeck,O.C. and Martin,F.H. (1973) Biopolymers, 12, 1313-1335.
30. Peattie,D.A. and Gilbert,W. (1980) Proc. Natl. Acad. Sci. USA, 77, 4679-4682.
31. Moazed,D., Stern,S. and Noller,H.F. (1986) J. Mol. Biol., 187, 399-416.
32. Ehresmann,C., Baudin,F., Mougel,M., Romby,P., Ebel,J.P and Ehresmann,B. (1987) Nucleic Acids Res., 15, 9109-9128.
33. Zar,J.H. (1984) Biostatistical Analysis. Prentice Hall, Englewood Cliffs.
34. Lima,W.F, Mohan,V. and Crooke,S. (1997) J. Biol. Chem., 272, 18191-18199.
35. Zoumadakis,M., Neubert,W.J. and Tabler,M. (1994) Nucleic Acids Res., 22, 5217-5278.
36. Wemer,M. and Uhlenbeck,O.C. (1995) Nucleic Acids Res., 23, 2092-2096.
37. Okamoto,T. and Wong-Staal,F. (1986) Cell, 47, 29-35.
38. Brierley,I., Digard,P. and Inglis,S.C. (1989) Cell, 57, 537-547.
39. Olsem,H.S., Nelbock,P., Cochrane,A.W. and Rosen,C.A. (1990) Science, 247, 845-848.
40. Milner,N., Mir,K.U. and Southern,E.M. (1997) Nature Biotechnol., 15, 537-541.
41. Crisell,P., Thompsons, and James,W. (1993) Nucleic Acids Res., 21, 5251-5255.
42. Bertrand,E., Pictet,R. and Grange,T. (1994) Nucleic Acids Res., 22, 293-300.
43. Climie,S.C. and Friesen,J.D. (1988) J. Biol. Chem., 263, 15166-15175.
44. Ares,M. and Igel,A.H. (1990) Genes Dev., 4, 2132-2145.
45. Zaug,A.J. and Cech,T.R. (1995) RNA, 1, 363-374.
46. Campbell,T.B. and Cech,T.R. (1995) RNA, 1, 598-609.
47. Hertel,K.J., Pardi,A., Uhlenbeck,O.C., Koizumi,M., Ohtsuka,E., Uesugi,S., Cedergren,R., Eckstein,F., Gerlach,W.L. and Hodgson,R. (1992) Nucleic Acids Res., 20, 3252.