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Volumn 182, Issue 6, 2000, Pages 1616-1623

Functionality of purified σ(N) (σ54) and a NifA-like protein from the hyperthermophile Aquifex aeolicus

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; NITROGENASE; SIGMA FACTOR; TRANSCRIPTION FACTOR;

EID: 0034050766     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.182.6.1616-1623.2000     Document Type: Article
Times cited : (13)

References (58)
  • 2
    • 0031793928 scopus 로고    scopus 로고
    • Iterated profile searches with PSI-BLAST - A tool for discovery in protein databases
    • Altschul, S. F., and E. V. Koonin. 1998. Iterated profile searches with PSI-BLAST - a tool for discovery in protein databases. Trends Biochem. Sci. 23:444-447.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 444-447
    • Altschul, S.F.1    Koonin, E.V.2
  • 4
    • 0033534368 scopus 로고    scopus 로고
    • Structure of CheA, a signal-transducing histidine kinase
    • Bilwes, A. M., L. A. Alex, B. R. Crane, and M. I. Simon. 1999. Structure of CheA, a signal-transducing histidine kinase. Cell 96:131-141.
    • (1999) Cell , vol.96 , pp. 131-141
    • Bilwes, A.M.1    Alex, L.A.2    Crane, B.R.3    Simon, M.I.4
  • 5
    • 0026729012 scopus 로고
    • Specific binding of the transcription factor sigma-54 to promoter DNA
    • Buck, M., and W. Cannon. 1992. Specific binding of the transcription factor sigma-54 to promoter DNA. Nature 358:422-424.
    • (1992) Nature , vol.358 , pp. 422-424
    • Buck, M.1    Cannon, W.2
  • 6
    • 0022545682 scopus 로고
    • Upstream activator sequences are present in the promoters of nitrogen fixation genes
    • Buck, M., S. Miller, M. Drummond, and R. Dixon. 1986. Upstream activator sequences are present in the promoters of nitrogen fixation genes. Nature 320:374-378.
    • (1986) Nature , vol.320 , pp. 374-378
    • Buck, M.1    Miller, S.2    Drummond, M.3    Dixon, R.4
  • 11
    • 0026450780 scopus 로고
    • Positive and negative effects of DNA bending on activation of transcription from a distant site
    • Claverie-Martin, F., and B. Magasanik. 1992. Positive and negative effects of DNA bending on activation of transcription from a distant site. J. Mol. Biol. 227:996-1008.
    • (1992) J. Mol. Biol. , vol.227 , pp. 996-1008
    • Claverie-Martin, F.1    Magasanik, B.2
  • 12
    • 0030019826 scopus 로고    scopus 로고
    • Nitrate reduction to ammonia by enteric bacteria: Redundancy, or a strategy for survival during oxygen starvation?
    • Cole, J. 1996. Nitrate reduction to ammonia by enteric bacteria: redundancy, or a strategy for survival during oxygen starvation? FEMS Microbiol. Lett. 136:1-11.
    • (1996) FEMS Microbiol. Lett. , vol.136 , pp. 1-11
    • Cole, J.1
  • 14
    • 0026072834 scopus 로고
    • The Bacillus subtilis sigL gene encodes an equivalent of sigma 54 from gram-negative bacteria
    • Debarbouille, M., I. Martin-Verstraete, F. Kunst, and G. Rapoport. 1991. The Bacillus subtilis sigL gene encodes an equivalent of sigma 54 from gram-negative bacteria. Proc. Natl. Acad. Sci. USA 88:9092-9096.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 9092-9096
    • Debarbouille, M.1    Martin-Verstraete, I.2    Kunst, F.3    Rapoport, G.4
  • 16
    • 0027322266 scopus 로고
    • Functional organization of the glnB-glnA cluster of Azospirillum brasilense
    • de Zamaroczy, M., A. Paquelin, and C. Elmerich. 1993. Functional organization of the glnB-glnA cluster of Azospirillum brasilense. J. Bacteriol. 175: 2507-2515.
    • (1993) J. Bacteriol. , vol.175 , pp. 2507-2515
    • De Zamaroczy, M.1    Paquelin, A.2    Elmerich, C.3
  • 17
    • 0025008948 scopus 로고
    • cobA function is required for both de novo cobalamin biosynthesis and assimilation of exogenous corrinoids in Salmonella typhimurium
    • Escalante-Semerena, J. C., S.-J. Suh, and J. R. Roth. 1990. cobA function is required for both de novo cobalamin biosynthesis and assimilation of exogenous corrinoids in Salmonella typhimurium. J. Bacteriol. 172:273-280.
    • (1990) J. Bacteriol. , vol.172 , pp. 273-280
    • Escalante-Semerena, J.C.1    Suh, S.-J.2    Roth, J.R.3
  • 19
    • 0032588981 scopus 로고    scopus 로고
    • N determining holoenzyme formation and properties
    • N determining holoenzyme formation and properties. J. Mol. Biol. 288:539-553.
    • (1999) J. Mol. Biol. , vol.288 , pp. 539-553
    • Gallegos, M.T.1    Buck, M.2
  • 20
    • 0033520123 scopus 로고    scopus 로고
    • 54 Region I in trans and implications for transcription activation
    • 54 Region I in trans and implications for transcription activation. J. Biol. Chem. 274:25285-25290.
    • (1999) J. Biol. Chem. , vol.274 , pp. 25285-25290
    • Gallegos, M.T.1    Cannon, W.V.2    Buck, M.3
  • 22
    • 0031658829 scopus 로고    scopus 로고
    • Characterization of the group 1 and group 2 sigma factors of the green sulfur bacterium Chlorobium tepidum and the green non-sulfur bacterium Chloroflexus aurantiacus
    • Gruber, T. M., and D. A. Bryant. 1998. Characterization of the group 1 and group 2 sigma factors of the green sulfur bacterium Chlorobium tepidum and the green non-sulfur bacterium Chloroflexus aurantiacus. Arch. Microbiol. 170:285-296.
    • (1998) Arch. Microbiol. , vol.170 , pp. 285-296
    • Gruber, T.M.1    Bryant, D.A.2
  • 23
    • 0033168678 scopus 로고    scopus 로고
    • A fork junction DNA-protein switch that controls promoter melting by the bacterial enhancer-dependent sigma factor
    • Guo, Y., L. Wang, and J. D. Gralla. 1999. A fork junction DNA-protein switch that controls promoter melting by the bacterial enhancer-dependent sigma factor. EMBO J. 18:3736-3745.
    • (1999) EMBO J. , vol.18 , pp. 3736-3745
    • Guo, Y.1    Wang, L.2    Gralla, J.D.3
  • 24
    • 0345451020 scopus 로고    scopus 로고
    • 54) in denitrification by Pseudomonas stutzeri is indirect and restricted to the reduction of nitrite and nitric oxide
    • 54) in denitrification by Pseudomonas stutzeri is indirect and restricted to the reduction of nitrite and nitric oxide. Appl. Environ. Microbiol. 64:3092-3095.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3092-3095
    • Hartig, E.1    Zumft, W.G.2
  • 25
    • 0011064770 scopus 로고
    • Products of nitrogen regulatory genes ntrA and ntrC of enteric bacteria activate glnA transcription in vitro: Evidence that the ntrA product is a sigma factor
    • Hirschman, J., P. K. Wong, K. Sei, J. Keener, and S. Kustu. 1985. Products of nitrogen regulatory genes ntrA and ntrC of enteric bacteria activate glnA transcription in vitro: evidence that the ntrA product is a sigma factor. Proc. Natl. Acad. Sci. USA 82:7525-7529.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 7525-7529
    • Hirschman, J.1    Wong, P.K.2    Sei, K.3    Keener, J.4    Kustu, S.5
  • 26
    • 0025012093 scopus 로고
    • The integration host factor stimulates interaction of RNA polymerase with NifA, the transcriptional activator of nitrogen fixation operons
    • Hoover, T. R., E. Santero, S. Porter, and S. Kustu. 1990. The integration host factor stimulates interaction of RNA polymerase with NifA, the transcriptional activator of nitrogen fixation operons. Cell 63:11-22.
    • (1990) Cell , vol.63 , pp. 11-22
    • Hoover, T.R.1    Santero, E.2    Porter, S.3    Kustu, S.4
  • 27
    • 0020055111 scopus 로고
    • Nucleotide sequence of the trpD gene, encoding anthranilate synthetase component II of Escherichia coli
    • Horowitz, H., G. E. Christie, and T. Platt. 1982. Nucleotide sequence of the trpD gene, encoding anthranilate synthetase component II of Escherichia coli. J. Mol. Biol. 156:245-256.
    • (1982) J. Mol. Biol. , vol.156 , pp. 245-256
    • Horowitz, H.1    Christie, G.E.2    Platt, T.3
  • 28
    • 0032839004 scopus 로고    scopus 로고
    • Sensing of nitrogen limitation by Bacillus subtilis: Comparison to enteric bacteria
    • Hu, P., T. Leighton, G. Ishkhanova, and S. Kustu. 1999. Sensing of nitrogen limitation by Bacillus subtilis: comparison to enteric bacteria. J. Bacteriol. 181:5042-5050.
    • (1999) J. Bacteriol. , vol.181 , pp. 5042-5050
    • Hu, P.1    Leighton, T.2    Ishkhanova, G.3    Kustu, S.4
  • 29
    • 0345758482 scopus 로고
    • Transcription of glnA by purified Escherichia coli components: Core RNA polymerase and the products of glnF, glnG, and glnL
    • Hunt, T. P., and B. Magasanik. 1985. Transcription of glnA by purified Escherichia coli components: core RNA polymerase and the products of glnF, glnG, and glnL. Proc. Natl. Acad. Sci. USA 82:8453-8457.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 8453-8457
    • Hunt, T.P.1    Magasanik, B.2
  • 30
    • 0033555834 scopus 로고    scopus 로고
    • 54 transcription activator, PspF, and its DNA-binding mutant, PspFΔHTH
    • 54 transcription activator, PspF, and its DNA-binding mutant, PspFΔHTH. J. Mol. Biol. 285:469-483.
    • (1999) J. Mol. Biol. , vol.285 , pp. 469-483
    • Jovanovic, G.1    Rakonjac, J.2    Model, P.3
  • 33
    • 0032955637 scopus 로고    scopus 로고
    • RNA polymerase of Aquifex pyrophilus: Implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria
    • Klenk, H. P., T. D. Meier, P. Durovic, V. Schwass, F. Lottspeich, P. P. Dennis, and W. Zillig. 1999. RNA polymerase of Aquifex pyrophilus: implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria. J. Mol. Evol. 48:528-541.
    • (1999) J. Mol. Evol. , vol.48 , pp. 528-541
    • Klenk, H.P.1    Meier, T.D.2    Durovic, P.3    Schwass, V.4    Lottspeich, F.5    Dennis, P.P.6    Zillig, W.7
  • 34
    • 0031969521 scopus 로고    scopus 로고
    • Distinct roles of an alternative sigma factor during both free-swimming and colonizing phases of the Vibrio cholerae pathogenic cycle
    • Klose, K. E., and J. J. Mekalanos. 1998. Distinct roles of an alternative sigma factor during both free-swimming and colonizing phases of the Vibrio cholerae pathogenic cycle. Mol. Microbiol. 28:501-520.
    • (1998) Mol. Microbiol. , vol.28 , pp. 501-520
    • Klose, K.E.1    Mekalanos, J.J.2
  • 36
    • 0032500833 scopus 로고    scopus 로고
    • Cloning and characterization of Planctomyces limnophilus rpoN: Complementation of a Salmonella typhimurium rpoN mutant strain
    • Leary, B. A., N. Ward-Rainey, and T. R. Hoover. 1998. Cloning and characterization of Planctomyces limnophilus rpoN: complementation of a Salmonella typhimurium rpoN mutant strain. Gene 221:151-157.
    • (1998) Gene , vol.221 , pp. 151-157
    • Leary, B.A.1    Ward-Rainey, N.2    Hoover, T.R.3
  • 37
    • 0024447323 scopus 로고
    • Regulation of transcription of the glnALG operon of Escherichia coli by protein phosphorylation
    • Magasanik, B. 1989. Regulation of transcription of the glnALG operon of Escherichia coli by protein phosphorylation. Biochimie 71:1005-1012.
    • (1989) Biochimie , vol.71 , pp. 1005-1012
    • Magasanik, B.1
  • 38
    • 0020198680 scopus 로고
    • Electrophoresis buffers for polyacrylamide gels at various pH
    • McLellan, T. 1982. Electrophoresis buffers for polyacrylamide gels at various pH. Anal. Biochem. 126:94-99.
    • (1982) Anal. Biochem. , vol.126 , pp. 94-99
    • McLellan, T.1
  • 40
    • 0030593468 scopus 로고    scopus 로고
    • Over-production of proteins in Escherichia coli: Mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels
    • Miroux, B., and J. E. Walker. 1996. Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. J. Mol. Biol. 260:289-298.
    • (1996) J. Mol. Biol. , vol.260 , pp. 289-298
    • Miroux, B.1    Walker, J.E.2
  • 41
    • 0033564649 scopus 로고    scopus 로고
    • Structure-specific tRNA-binding protein from the extreme thermophile Aquifex aeolicus
    • Morales, A. J., M. A. Swairjo, and P. Schimmel. 1999. Structure-specific tRNA-binding protein from the extreme thermophile Aquifex aeolicus. EMBO J. 18:3475-3483.
    • (1999) EMBO J. , vol.18 , pp. 3475-3483
    • Morales, A.J.1    Swairjo, M.A.2    Schimmel, P.3
  • 42
    • 0032704710 scopus 로고    scopus 로고
    • Prokaryotic nitrate reduction: Molecular properties and functional distinction among bacterial nitrate reductases
    • Moreno-Vivián, C., P. Cabello, M. Martínez-Luque, R. Blasco, and F. Castillo. 1999. Prokaryotic nitrate reduction: molecular properties and functional distinction among bacterial nitrate reductases. J. Bacteriol. 181:6573-6584.
    • (1999) J. Bacteriol. , vol.181 , pp. 6573-6584
    • Moreno-Vivián, C.1    Cabello, P.2    Martínez-Luque, M.3    Blasco, R.4    Castillo, F.5
  • 43
    • 0027340543 scopus 로고
    • 54 bacterial enhancer-binding protein family: Mechanism of action and phylogenetic relationship of their functional domains
    • 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J. Bacteriol. 175:6067-6074.
    • (1993) J. Bacteriol. , vol.175 , pp. 6067-6074
    • Morett, E.1    Segovia, L.2
  • 46
    • 0032896054 scopus 로고    scopus 로고
    • RpoN-dependent transcription of rpoH?
    • Pallen, M. 1999. RpoN-dependent transcription of rpoH? Mol. Microbiol. 31:393.
    • (1999) Mol. Microbiol. , vol.31 , pp. 393
    • Pallen, M.1
  • 47
    • 0022446209 scopus 로고
    • Transcription of glnA in E. Coli is stimulated by activator bound to sites far from the promoter
    • Reitzer, L. J., and B. Magasanik. 1986. Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter. Cell 45:785-792.
    • (1986) Cell , vol.45 , pp. 785-792
    • Reitzer, L.J.1    Magasanik, B.2
  • 49
    • 18744419606 scopus 로고    scopus 로고
    • Two different respiratory Rieske proteins are expressed in the extreme thermoacidophilic crenarchaeon Sulfolobus acidocaldarius: Cloning and sequencing of their genes
    • Schmidt, C. L., S. Anemuller, and G. Schafer. 1996. Two different respiratory Rieske proteins are expressed in the extreme thermoacidophilic crenarchaeon Sulfolobus acidocaldarius: cloning and sequencing of their genes. FEBS Lett. 388:43-46.
    • (1996) FEBS Lett. , vol.388 , pp. 43-46
    • Schmidt, C.L.1    Anemuller, S.2    Schafer, G.3
  • 50
    • 0031947454 scopus 로고    scopus 로고
    • A periplasmic flavoprotein in Wolinella succinogenes that resembles the fumarate reductase of Shewanella putrefaciens
    • Simon, J., R. Gross, O. Klimmek, M. Ringel, and A. Kroger. 1998. A periplasmic flavoprotein in Wolinella succinogenes that resembles the fumarate reductase of Shewanella putrefaciens. Arch. Microbiol. 169:424-433.
    • (1998) Arch. Microbiol. , vol.169 , pp. 424-433
    • Simon, J.1    Gross, R.2    Klimmek, O.3    Ringel, M.4    Kroger, A.5
  • 52
    • 0025271478 scopus 로고
    • Signal transduction in bacteria
    • Stock, J. B., A. M. Stock, and J. M. Mottonen. 1990. Signal transduction in bacteria. Nature 344:395-400.
    • (1990) Nature , vol.344 , pp. 395-400
    • Stock, J.B.1    Stock, A.M.2    Mottonen, J.M.3
  • 55
    • 0030984217 scopus 로고    scopus 로고
    • Multiple pathways to bypass the enhancer requirement of sigma 54 RNA polymerase: Roles for DNA and protein determinants
    • Wang, J. T., A. Syed, and J. D. Gralla. 1997. Multiple pathways to bypass the enhancer requirement of sigma 54 RNA polymerase: roles for DNA and protein determinants. Proc. Natl. Acad. Sci. USA 94:9538-9543.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 9538-9543
    • Wang, J.T.1    Syed, A.2    Gralla, J.D.3
  • 56
    • 0031740289 scopus 로고    scopus 로고
    • Multiple in vivo roles for the -12-region elements of sigma 54 promoters
    • Wang, L., and J. D. Gralla. 1998. Multiple in vivo roles for the -12-region elements of sigma 54 promoters. J. Bacteriol. 180:5626-5631.
    • (1998) J. Bacteriol. , vol.180 , pp. 5626-5631
    • Wang, L.1    Gralla, J.D.2
  • 57
    • 0033578701 scopus 로고    scopus 로고
    • Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution
    • Zhang, G., E. A. Campbell, L. Minakhin, C. Richter, K. Severinov, and S. A. Darst. 1999. Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution. Cell 98:811-824.
    • (1999) Cell , vol.98 , pp. 811-824
    • Zhang, G.1    Campbell, E.A.2    Minakhin, L.3    Richter, C.4    Severinov, K.5    Darst, S.A.6
  • 58
    • 0027938369 scopus 로고
    • Nucleotide sequence and characterization of the Rhodobacter sphaeroides glnB and glnA genes
    • Zinchenko, V., Y. Churin, V. Shestopalov, and S. Shestakov. 1994. Nucleotide sequence and characterization of the Rhodobacter sphaeroides glnB and glnA genes. Microbiology 140:2143-2151.
    • (1994) Microbiology , vol.140 , pp. 2143-2151
    • Zinchenko, V.1    Churin, Y.2    Shestopalov, V.3    Shestakov, S.4


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