High Throughput Fingerprint Analysis of Large-Insert Clones

Genome Research

Volumn 7, Issue 11, 1997, Pages 1072-1084

  Marra, Marco A ^a   Kucaba, Tamara A ^a   Dietrich, Nicole L ^a   Green, Eric D ^b   Brownstein, Buddy ^a   Wilson, Richard K ^a   McDonald, Ken M ^a   Hillier, LaDeana W ^a   McPherson, John D ^a   Waterston, Robert H ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME 7; CHROMOSOME MAP; DNA FINGERPRINTING; GENETIC MARKER; HUMAN; HUMAN GENOME PROJECT; METHODOLOGY; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; RESTRICTION MAPPING;

BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 7; CLONING, MOLECULAR; DNA FINGERPRINTING; GENETIC MARKERS; HUMAN GENOME PROJECT; HUMANS; RESTRICTION MAPPING;

EID: 0031263075     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.7.11.1072     Document Type: Article

References (16)

1. Coulson, A., J. Sulston, S. Brenner, and J. Karn. 1986. Toward a physical map of the genome of the nematode Caenorhabditis elegans. Proc. Natl. Acad. Sci. 83: 7821-7825.
2. Coulson, A., Y. Kozono, B. Lutterbach, R. Shownkeen, J. Sulston, and R. Waterston. 1991. YACS and the C. elegans genome. BioEssays 13: 413-417.
3. Goffeau, A., B.G. Barrell, H. Bussey, R.W. Davis, B. Dujon, H. Feldmann, F. Galibert, J.D. Hoheisel, C. Jacq, M. Johnston, E.J. Louis, H.W. Mewes, Y. Murakami, P. Philippsen, W. Tettelin, and S.G. Oliver. 1996. Life with 6,000 genes. Science 274: 546-567.
4. Marra, M.A., L.A. Weinstock, and E.R. Mardis. 1996. End sequence determination from large insert clones using energy transfer fluorescent primers. Genome Res. 6: 1118-1122.
5. Nagaraja, R., S. MacMillan, J. Kere, C. Jones, S. Cox, M. Schmatz, J. Terrell, M. Shomaker, C. Jermak, C. Hoff et al. 1997. X chromosome map at 75 kb STS resolution, revealing extremes of recombination and GC content. Genome Res. 7: 210-222.
6. Olson, M.V., J.E. Dutchik, M.Y. Graham, G.M. Brodeur, C. Helms, M. Frank, M. MacCollin, R. Scheinman, and T. Frank. 1986. Random clone strategy for genomic restriction mapping in yeast. Proc. Natl. Acad. Sci. 83: 7826-7830.
7. Riles, L., J.E. Dutchik, A. Baktha, B.K. McCauley, E.C. Thayer, M.P. Leckie, V.V. Braden, J.E. Depke, and M.V. Olson. 1993. Physical maps of the six smallest chromosomes of Saccharomyces cerevisiae at a resolution of 2.6 kilobase pairs. Genetics 134: 81-150.
8. Sambrook, J., E.F. Fritsch, and T. Maniatis. 1989. Molecular cloning: A laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
9. Siden-Kiamos, I., R.D.C. Saunders, L. Spanos, T. Majerus, J. Treanear, C. Savakis, C. Louis, D.M. Glover, M. Ashburner, and F.C. Kafatos. 1990. Towards a physical map of the Drosophila melanogaster genome: Mapping of cosmid clones within defined genomic divisions. Nucleic Acids Res. 18: 6261-6270.
10. Soderlund, C., I. Longden, and R. Mott. 1997. FPC: A system for building contigs from restriction fingerprinted clones. CABIOS 13: (in press).
11. Stallings, R.L., D.C. Torney, C.E. Hildebrand, J.L. Longmire, L.L. Deaven, J.H. Jett, N.A. Doggett, and R.K. Moyzis. 1990. Physical mapping of human chromosomes by repetitive sequence fingerprinting. Proc. Natl. Acad. Sci. 87: 6218-6222.
12. Sulston, J., F. Mallett, R. Staden, R. Durbin, T. Horsnell, and A. Coulson. 1988. Software for genome mapping by fingerprinting techniques. CABIOS 4: 125-132.
13. Taylor, K., N. Hornigold, D. Conway, D. Williams, Z. Ulinowski, M. Agochiya, P. Fattorini, P. de Jong, P.F.R. Little, and J. Wolfe. 1996. Mapping the human Y chromosome by fingerprinting cosmid clones. Genome Res. 6: 235-248.
14. Wilson, R., R. Ainscough, K. Anderson, C. Baynes, M. Berks, J. Bonfield, J. Burton, M. Connell, T. Copsey, J. Cooper et al. 1994. 2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans. Nature 368: 32-38.
15. Wilson, R.K. and E.R. Mardis. 1997. Fluorescence-based DNA sequencing and shotgun sequencing. In Genome analysis: A laboratory manual (ed. B. Birren, E. Green, P. Heiter, and R. Myers). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. (In press).
16. Wong, G.K., J. Yu, E.C. Thayer, and M.V. Olson. 1997. Multiple-complete-digest restriction fragment mapping: Generating sequence-ready maps for large-scale DNA sequencing. Proc. Natl. Acad. Sci. 94: 5225-5230.