Construction of an 800-kb contig in the near-centromeric region of the rice blast resistance gene Pi-ta2 using a highly representative rice BAC library

Molecular and General Genetics

Volumn 254, Issue 6, 1997, Pages 611-620

  Nakamura, S ^a,b   Asakawa, S ^c   Ohmido, N ^d   Fukui, K ^d   Shimizu, N ^c   Kawasaki, S ^a,e  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c KEIO UNIVERSITY   (Japan)

^d Hokuriku Experimental Station   (Japan)

^e JRDC ^*  (Japan)

Author keywords

Bacterial Artificial Chromosome (BAC) library; Centromere; Contig; Rice (Oryza sativa); Rice blast resistance gene

Indexed keywords

CHLOROPLAST DNA; CONTIG;

ARTICLE; CENTROMERE; CHROMOSOME; CHROMOSOME 12; CHROMOSOME 2; CHROMOSOME STRUCTURE; FLUORESCENCE IN SITU HYBRIDIZATION; GENETIC DISTANCE; MOLECULAR CLONING; PRIORITY JOURNAL;

CENTROMERE; CHLOROPLASTS; CHROMOSOME WALKING; CHROMOSOMES, BACTERIAL; CLONING, MOLECULAR; DNA TRANSPOSABLE ELEMENTS; DNA, PLANT; GENE LIBRARY; GENES, PLANT; GENETIC MARKERS; IN SITU HYBRIDIZATION, FLUORESCENCE; MEMBRANES, ARTIFICIAL; ORYZA SATIVA; PLANT DISEASES; POLYMERASE CHAIN REACTION; REPETITIVE SEQUENCES, NUCLEIC ACID;

EID: 0030958788     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050459     Document Type: Article

References (51)

1. Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Reporter 9:208-218
2. Anderson C (1993) Genome shortcut leads to problems. Science 259:1684-1687
3. Arondel V, Lemieux B, Hwang I, Gibson S, Goodman HM, Somerville CR (1992) Map-based cloning of gene controlling omega-3 fatty acid desaturation in Arabidopsis. Science 258:1353-1355
4. Bent AF, Kunkel BN, Dahlbeck D, Brown KL, Schmidt R, Giraudat J, Leung J, Staskawicz BJ (1994) RPS2 of Arabidopsis thailiana: a leucine-rich repeat class of plant disease resistance genes. Science 265:1856-1860
5. Bonnema G, Hontelez J, Verkerk R, Zhang YQ, Daelen R, Kammen A, Zabel P (1996) An improved method of partially digesting plant megabase DNA suitable for YAC cloning: application to the construction of a 5.5 genome equivalent YAC library of tomato. Plant J 9:125-133
6. Causse MA, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald PC, Harrington SE, Second G, McCouch SR, Tanksley SD (1994) Saturated molecular map of the rice genome based on an interspecific backcross populaion. Genetics 138:1251-1274
7. Choi S, Creelman RA, Mullet JE, Wing RA (1995) Construction and characterization of a bacterial artificial chromosome library of Arabidopsos thaliana. Weed World 2:17-20
8. Christou P, Ford TL, Kofron M (1991) Production of transgenic rice (Oryza sativa L.) plants from agronomically important indica and japonica varieties via electric discharge particle acceleration of exogeneous DNA into immature zygotic embryos. Bio/Technology 9:955-962
9. Collins FA (1992) Positional cloning: Let's not call it reverse anymore. Nature Genet 1:3-6
10. Creusot F, Fouilloux E, Dron M, Lafleuriel J, Picard G, Billault A, Paslier DL, Cohen D, Chaboute M-E, Durr A, Fleck J, Gigot C, Camilleri C, Bellini C, Caboche M, Bouchez D (1995) The CIC library: a large insert YAC library for genome mapping in Arabidopsis thalina. Plant J 8:763-770
11. Dixon MS, Jones DA, Keddie JS, Thomas CM, Harrison K, Jones DG (1996) The tomato Cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins. Cell 84:451-459
12. Edwards K, Thompson H, Edwards D, Saizieu, Sparks C, Thompson JA, Greenland AJ, Eyers M, Schuch W (1992) Construction and characterization of a yeast artificial chromosome library containing three haploid maize genome equivalents. Plant Mol Biol 19:299-308
13. Eyers M, Edwards K, Schuch W (1992) Construction and characterization of a yeast artificial chromosome library containing two haploid Beta vulgaris L. genome equivalents. Gene 121:195-201
14. Fukui K (1996) Plant chromosome at mitosis. In: Fukui K, Nakamura S (eds) Plant Chromosomes: laboratory methods. CRC Press, Boca Raton, pp 1-18
15. Grant MR, Godiard L, Straube E, Ashfield T, Lewald J, Sattler A, Innes RW, Dangl JL (1995) Structure of the Arabidopsis RPMI gene enabling dual specificity disease resistance. Science 269:843-846
16. Grill E, Sommerville C (1991) Construction and characterization of a yeast artificial chromosome library of Arabidopsis which is suitable for chromosome walking. Mol Gen Genet 226:484-490
17. Hiei Y, Ohta S, Komari T, Kumashiro T (1994) Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J 6:271-282
18. Hirai A, Sugiura M (1988) Structure of chloroplast DNA isolated from rice. Rice Genet News 8:142-143
19. Inukai T, Nelson RJ, Zeigler RS, Sarkarung S, Mackill DJ, Bonnman JM, Takamure I, Kinoshita T (1994) Allelism of blast resistance genes in near-isogenic lines of rice. Phytopathology 84:1278-1283
20. Kamisugi Y, Fukui K (1996) Chromosome dissection and direct cloning. In: Fukui K, Nakamura S (eds) Plant Chromosomes: laboratory methods CRC Press, Boca Raton, pp (107-122)
21. Kim U-J, Shizuya H, Jong PJ, Birren B, Simon MI (1992) Stable propagation of cosmid sized human DNA inserts in an F factor-based vector. Nucleic Acids Res 20:1083-1085
22. Kurata N, Nagamura Y, Yamamoto K, Harushima Y, Sue N, Wu J, Antonio BA, Shomura A, Shimizu T, Lin SY, Inoue T, Fukuda A, Shimano T, Kuboki Y, Toyama T, Miyamoto Y, Kirihara T, Hayasaka K, Miyato A, Momma L, Umehara Y, Yano M, Sasaki T, Minobe V (1994) A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nature Genet 8:365-372
23. Leung J, Bouvier-Durand M, Morris P-C, Guerrier D, Chefdor F, Giraudat J (1994) Arabidopsis ABA response gene ABI1: features of a calcium-modulate protein phosphatase. Science 264:1448-1452 (1994)
24. Liu YF, Whittier RF (1995) Thermal asymmetric interlaced PCR: Automatable amplification and sequencing of insert end fragments from Pl and YAC clones for chromosome walking. Genomics 25:674-681
25. Martin GB, Ganal MW, Tanksley SD (1992) Construction of a yeast artificial chromosome library of tomato and identification of cloned segments linked to two disease resistance loci. Mol Gen Genet 233:25-32
26. Martin GB, Brommonschenkel SH, Chunwongse J, Frary A, Martin W, Ganal RS, Wu T, Earle HD, Tanksley SD (1993) Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262:1432-1436
27. Matsuoka M, Kano-Murakami Y, Tanaka Y, Ozeki Y, Yamamoto N (1988) Classification and nucleotide sequence of cDNA encoding the small subunit of ribose-1, 5-bisphosphate carboxylase from rice. Plant Cell Physiol 29:1059-1022
28. Meyer K, Martin PL, Grill E (1994) A protein phosphatase 2C involved in ABA signal transduction in Arabidopsis thaliana. Science 264:1452-1455
29. Mindrinos M, Katagiri F, Yu GL, Ausubel FM (1994) The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats. Cell 78:1089-1099
30. Miyamoto M, Ando I, Rybka K, Kodama O, Kawasaki S (1996) High resolution mapping of the indica-derived rice blast resistance genes. I. Pi-b. Mol Plant-Microbe Interact 9:6-13
31. Nomura K, Kasawaki S (1992) Characterization of rice protoplastdisrupting factor secreted by rice blast fungus (Pyricularia oryza Cav.). Ann Phytopathol Soc Jpn 58:200-207
32. O'Brien SJ ed. (1993) Genetic Maps: locus maps of complex genomes (6th edn) Book 6 Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
33. Riley J, Butler R, Ogilvie D, Finniear R, Jenner D, Powell S, Anand R, Smith JC, Markham AF (1990) A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosome (YAC) clones. Nucleic Acids Res 18:2887-2890
34. Rybka K, Miyamoto M, Ando I, Saito A, Kawasaki S (1997) High resolution mapping of the indica-derived rice blast resistance genes. II. Pi-ta2 and Pi-ta and a consideration about their origin. Mol Plant-Microbe Interact, in press
35. Saito A, Yano M, Kishimoto N, Nakagahara N, Yoshimura A, Saito K, Kuhara S, Ukai Y, Kawase M, Nagamine T, Yoshimura S, Ideta O, Ohsawa R, Hayano Y, Iwata N, Sugiura M (1991) Linkage map of restriction fragment length polymorphism loci in rice. Jpn J Breed 41:665-670
36. Sambrook J, Fritsch EF, Manitatis T (1989) Molecular cloning: a laboratory manual (2nd edn) Cold Spring Habor Laboratory Press, Cold Spring Harbor, New York
37. Shaw DD (1994) Centromeres: moving chromosomes through space and time. Trends Evol 9:170-175
38. Schmidt R, West J, Love K, Lenehan Z, Lister C, Thompson H, Bouchez D, Dean C (1995) Physical map and organization of Arabidopsis thaliana chromosome 4. Science 270:480-483
39. Shizuya H, Birren B, Kim UJ, Manicino V, Slepak T, Tashiiri Y, Simon M (1992) Cloning and stable maintenance of 300-kilo-base-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc Natl Acad Sci USA 89:8794-8797
40. Shimamoto K, Terada R, Izawa T, Fujimoto H (1988) Fertile transgenic rice plants regenerated from transformed protoplast. Nature 338:273-276
41. Singh K, Ishii T, Parco A, Huang N, Brar DS, Khush GS (1996) Centromere mapping and orientation of the molecular linkage map of rice (Oryza sativa L.) Proc Natl Acad Sci USA 93:6163-6168
42. Staskawicz BJ, Ausbel FM, Baker BJ, Ellis JG, Jones JDG (1995) Molecular genetics of plant disease resistance. Science 268:661-667
43. Song W-Y, Wang G-L, Chen L-L, Kim H-S, Pi L-Y, Holsten T, Gardner J, Wang B, Zhai W-X, Zhu L-H, Fauquet C, Ronald P (1995) A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 270:1804-1806
44. Sun ZX, Zhao CZ, Zheng KL, Qi XF, Fu YP (1983) Somaclonal genetics of rice, Oryza sativa L. Theor Appl Genet 67:67-73
45. Tanksley SD, Ganal MW, Prince JP, de Vicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AH, Pineda O, Roder MS, Wing RA, Wu W, Young ND (1992) High density molecular linkage maps of the tomato and potato genomes. Genetics 132:1141-1160
46. Tao Q, Zhao H, Qiu L, Hong G (1994) Construction of a full bacterial artificial chromosome (BAC) library of Oryza sativa genome. Cell Res 4:127-133
47. Umehara Y, Inagaki A, Tanoue H, Yasukochi Y, Nagsamura Y, Saji S, Otsuki Y, Fujimura T, Kurata N, Minobe Y (1995) Construction and characterization of a rice YAC library for physical mapping. Mol Breed 1:79-89
48. Ward E, Jen GC (1990) Isolation of single-copy-sequence clones from a yeast artificial chromosome library of randomly-sheared Arabidopsis thaliana DNA. Plant Mol Biol 14:561-568
49. Wang GL, Holsten TE, Song WY, Wang HP, Ronald PC (1995) Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus. Plant J 7:525-533
50. Woo SS, Jiang J, Gill BS, Paterson AH, Wing RA (1994) Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res 22:4922-4931
51. Zhang HB, Choi S, Woo SS, Li Z, Wing RA (1996) Construction and characterization of two rice bacterial artificial chromosome libraries from the parents of a permanent recombinant inbred mapping population. Mol Breed 2:11-24