Construction of tomato genomic DNA libraries in a binary-BAC (BIBAC) vector

Plant Journal

Volumn 18, Issue 2, 1999, Pages 223-229

  Hamilton, Carol M ^a,c   Frary, Anne ^a   Xu, Yimin ^a   Tanksley, Steven D ^a   Zhang, Hong Bin ^b  

^a Department of Population Medicine and Diagnostic Sciences   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

^c Clinical Data Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CDNA LIBRARY; MITOCHONDRIAL DNA; PLANT GENETICS; POLYMERASE CHAIN REACTION; REPETITIVE DNA;

AGROBACTERIUM TUMEFACIENS; LYCOPERSICON ESCULENTUM; LYCOPERSICON PENNELLII;

EID: 0032957771     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1999.00433.x     Document Type: Article

References (31)

1. Arumuganathan, K. and Earle, E.D. (1991) Nuclear DNA content of some important plant species. Plant Mol. Biol. Report, 9, 208-218.
2. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl, K. (1998) Current Protocols in Molecular Biology. New York: John Wiley & Sons.
3. Bernatzky, R. and Tanksley, S.D. (1986) The detection of single or low copy sequences in tomato on Southern blots. Plant Mol. Biol. Report, 4, 37-41.
4. Bonnema, G., Hontelez, J., Verkerk, R., van Zhang, Y.Q., Daelen, R., Kammen, A. and Zabel, P. (1996) An improved method of partially digesting plant megabase DNA suitable for YAC cloning: application to the construction of a 5.5 genome equivalent YAC library of tomato. Plant J. 9, 125-133.
5. Farrand, S.K., Morchoe, S.P. and McCutchan, J. (1989) Construction of an Agrobacterium tumefaciens C58 recA mutant. J. Bact. 171, 5314-5321.
6. Feinberg, A.P. and Vogelstein, B. (1983) A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132, 6-13.
7. Frary, A. and Earle, E.D. (1996) An examination of factors affecting the efficiency of Agrobacterium-mediated transformation of tomato. Plant Cell Reports, 16, 235-240.
8. Frijters, A.C.J., Zhang, Z., VanDamme, M., Wang, G.L., Ronald, P.C. and Michelmore, R.W. (1997) Construction of a bacterial artificial chromosome library containing large EcoRI and HindIII genomic fragments of lettuce. Theor. Appl. Genet. 94, 390-399.
9. Ganal, M.W., Lapitan, N.L.V. and Tanksley, S.D. (1988) A molecular and cytogenetic survey of major repeated DNA sequences in tomato Lycopersicon esculentum. Mol. Gen. Genet. 213, 262-268.
10. Hamilton, C.M. (1997) A binary-BAC system for plant transformation with high-molecular-weight DNA. Gene, 200, 107-116.
11. Hamilton, C.M. (1998) BIBAC technology: progress and prospects. Agbiotech News, 10, 23N-28N.
12. Hamilton, C.M., Frary, A., Lewis, C. and Tanksley, S.D. (1996) Stable transfer of intact high molecular weight DNA into plant chromosomes. Proc. Natl Acad. Sci. USA, 93, 9975-9979.
13. Hanson, M.R. and Folkerts, O. (1992) Structure and function of the higher plant mitochondrial genome. Internat. Rev. Cytol. 141, 129-172.
14. Hu, J. and Bogorad, L. (1990) Maize chloroplast RNA polymerase: The 180-120, and 38-kilodalton polypeptides are encoded in chloroplast genes. Proc. Natl Acad. Sci. USA, 87, 1531-1535.
15. Kim, U.-J., Birren, B.W., Slepak, T, Mancino, V., Boysen, C., Kang, H.-L., Simon, M.I. and Shizuya, H. (1996) Construction and characterization of a human bacterial artificial chromosome library. Genomics. 34, 213-218.
16. Kononov, M.E., Bassuner, B. and Gelvin, S.B. (1997) Integration of T-DNA binary vector 'backbone' sequences into the tobacco genome: evidence for multiple complex patterns of integration. Plant J. 11, 945-957.
17. Lapitan, N.V.L., Ganal, M.W. and Tanksley, S.D. (1989) Somatic chromosome karyotype of tomato based on in situ hybridization of the TGRI satellite repeat. Genome, 32, 992-998.
18. Martin, G.B., Ganal, M.W. and Tanksley, S.D. (1992) Construction of a yeast artificial chromosome library of tomato and identification of cloned segments linked to two disease resistance loci. Mol. Gen. Genet. 233, 25-32.
19. Martin, G.B., Williams, J.G.K. and Tanksley, S.D. (1991) Rapid identification of markers linked to a Pseudomonas resistance gene in tomato by using random primers and near-isogenic lines. Proc. Natl Acad. Sci. USA. 88, 2336-2340.
20. Michelmore, R.W., Paran, I. and Kesseli, R.V. (1991) Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl Acad. Sci. USA, 88, 9828-9832.
21. Palmer, J.D. and Zamir, D. (1982) Chloroplast DNA evolution and phylogenetic relationships in Lycopersicon. Proc. Natl Acad. Sci. USA, 79, 5006-5010.
22. Pierce, J.C., Sauer, B. and Sternberg, N. (1992) A positive selection vector for cloning high molecular weight DNA by the bacteriophage P1 system: Improved cloning efficacy. Proc. Natl Acad. Sci. USA, 89, 2056-2060.
23. Seed, B., Parker, R.C. and Davidson, N. (1982) Representation of DNA sequences in recombinant DNA libraries prepared by restriction enzyme partial digestion. Gene, 19, 201-209.
24. Shizuya, H., Birren, B., Kim, U.-J., Mancino, V., Slepak, T., Tachiiri, Y. and Simon, M. (1992) Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl Acad. Sci. USA, 89, 8794-8797.
25. Takano, M., Egawa, H., Ikeda, J.-E. and Wakasa, K. (1997) The structures of integration sites in transgenic rice. Plant J. 11, 353-361.
26. Tanksley, S.D., Ganal, M.W. and Martin, G.B. (1995) Chromosome landing: a paradigm for map-based gene cloning in plants with large genomes. TIG, 11, 63-68.
27. Tanksley, S.D. and McCouch, S.R. (1997) Seed banks and molecular maps: Unlocking genetic potential from the wild. Science, 277, 1063-1066.
28. Tanksley, S.D. and Nelson, J.C. (1996) Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines. Theor. Appl. Genet 92, 191-203.
29. deVicente, M.C. and Tanksley, S.D. (1993) QTL analysis of transgressive segregation in an interspecific tomato cross. Genetics, 134, 585-596.
30. Woo, S.-S., Jiang, J., Gill, B.S., Patterson, A.H. and Wing, R.A. (1994) Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucl Acids Res. 22, 4922-4931.
31. Zhang, H.-B., Choi, S., Woo, S.-S., Li, Z. and Wing, R.A. (1996) Construction and characterization of two rice bacterial chromosome libraries from the parents of a permanent recombinant inbred mapping population. Mol. Breed. 2, 11-24.