Characterization and genetic mapping of simple repeat sequences in the tomato genome

Molecular and General Genetics

Volumn 250, Issue 1, 1996, Pages 39-49

  Broun, Pierre ^a,b   Tanksley, Steven D ^a  

^a Department of Population Medicine and Diagnostic Sciences   (United States)

^b GEOPHYSICAL LABORATORY   (United States)

Author keywords

Genome organization; Linkage mapping; Microsatellites

Indexed keywords

PLANT DNA; MICROSATELLITE DNA; OLIGONUCLEOTIDE;

ARTICLE; CHROMOSOME MAP; DINUCLEOTIDE REPEAT; GENE FREQUENCY; GENETIC POLYMORPHISM; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; SOUTHERN BLOTTING; TOMATO; TRINUCLEOTIDE REPEAT; DNA PROBE; GENE MAPPING; GENETIC LINKAGE; GENOME; NONHUMAN; PLANT; PRIORITY JOURNAL;

BASE SEQUENCE; BLOTTING, SOUTHERN; CHROMOSOME MAPPING; DINUCLEOTIDE REPEATS; DNA, PLANT; GENE FREQUENCY; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; REPETITIVE SEQUENCES, NUCLEIC ACID; TRINUCLEOTIDE REPEATS;

LYCOPERSICON ESCULENTUM;

EID: 0029671228     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02191823     Document Type: Article

References (41)

1. Akkaya MS, Bhagwat AA, Cregan PB (1992) Length polymorphisms of simple sequence repeat DNA in soybean. Genetics 132:1131-1139
2. Alfenito MR, Birchler JA (1993) Molecular characterization of a maize B chromosome centric sequence. Genetics 135:589-597
3. Arens P, Odinot P, van Heusden AW, Lindout P, Vosman B (1995) CATA- and GACA-repeats are not evenly distributed throughout the tomato genome. Genome 38:84-90
4. Bell CJ, Ecker JR (1994) Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19:137-144
5. Bernatzky R, Tanksley SD (1986) Toward a saturated linkage map in tomato based on isozymes and random cDNA sequences. Genetics 112:887-898
6. Bishop MD, Kappes SM, Keele JW, Stone RT, Sunden SLF, Hawkins GA, Solinas Toldo S, Fries R, Grosz MD, Yoo J, Beattie CW (1994) A genetic linkage map for cattle. Genetics 136:619-639
7. Broun P, Tanksley SD (1993) Characterization of tomato DNA clones with sequence similarity to human minisatellites 33.6 and 33.15. Plant Mol Biol 23:231-242
8. Cabot EL, Doshi P, Wu ML, Wu CI (1993) Population genetics of tandem repeats in ccntromeric heterochromatin: unequal crossing over and chromosomal divergence at the Responder locus of Drosophila melanogaster. Genetics 135:477-487
9. Condit R, Hubbell SP (1991) Abundance and DNA sequence of two-base repeat regions in tropical tree genomes. Genome 34:66-71
10. Crawford AM, Montgomery GW, Pierson CA, Brown T, Dodds KG, Sunden SLF, Henry HM, Ede AJ, Swarbrick PA, Berryman T, Penty JM, Hill DF (1994) Sheep linkage mapping: nineteen linkage groups derived from the analysis of paternal half-sib families. Genetics 137:573-579
11. Fpplen JT, Ammer H, Epplen C, Kammerbauer C, Mitreiter R, Roewer L, Schwaiger W, Steimle V, Zischler H, Albert E, Andreas A, Beyermann B, Meyer W, Buitkamp J, Nanda I, Schmid M, Nurnberg P, Pena SDJ, Poche H, Sprecher W, Schartl M, Weising K, Yassouridis A (1991) Oligonucleotide fingerprinting using simple repeat motifs: a convenient ubiquitously applicable method to detect hypervariability for multiple purposes. In: Burke T, Dolf G, Jeffreys AJ, Wolff R (eds) DNA fingerprinting: approaches and applications. Experientia Suppl 58: pp 50-69
12. Grandillo S, Tanksley SD (1995) QTL analysis of horticultural traits differentiating the cultivated tomato from the closely related species L. pimpinellitolium. Theor Appl Genet, in press
13. Gyapay G, Morissette J, Vignal A, Dib C, Fizames C, Millasseau P, Marc S, Bernardi G, Lathrop M, Weissenbach J (1994) The 1993-94 Genethon human genetic linkage map. Nature Genetics 7:246-339
14. Hamada H, Petrino MG, Kakunaga T (1982) A novel repeated element with Z-DNA-forming potential is widely found in evolutionarily diverse eukaryotic genomes. Proc Natl Acad Sci USA 79:6465-6469
15. Jeffreys AJ, Wilson V, Thein SL (1985) Hypervariable 'minisatellite' regions in human DNA. Nature 314:67-73
16. Kelly R, Bulfield G, Collick A, Gibbs M, Jeffreys AJ (1989) Characterization of a highly unstable mouse minisatellite locus: evidence for somatic mutation during early development. Genomics 5: 844-856
17. Kipling D, Cooke HJ (1990) Hypervariable ultra-long telomeres in mice. Nature 347:400-402
18. Lagercrantz U, Ellegren H, Andersson L (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res 21:1111-1115
19. Laurent AM, Marcais B, Muleris M, Roizes G (1994) A rapid and simple method to isolate and characterize highly polymorphic markers from the centromeric regions of the human chromosomes. Nucleic Acids Res 22:194-199
20. Levinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4: 203-221
21. Miller JC, Tanksley SD (1990) RFLP analysis of phylogenctic relationships and genetic variation in the genus Lycopersicon. Theor Appl Genet 80:437-448
22. Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175-182
23. Rafalski JA, Tingey SV (1993) Genetic diagnostics in plant breeding: RAPDs, microsatellites and machines. Trends Genet 9:275-280
24. Richards EJ, Goodman HM, Ausubel FM (1991) The centromere region of Arabidopsis thaliana chromosome 1 contains telomere-similar sequences. Nucleic Acids Res 19:3351-3357
25. Rus-Kortekaas W, Smulders MJM, Arens P, Vosman B (1994) Direct comparison of levels of genetic variation in tomato detected by a GACA-containing microsatellite probe and by random amplified polymorphic DNA. Genome 37:375-381
26. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual (2nd edn). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
27. n repetitive sequences in mammalian genomes. Genomics 10:807-815
28. Steiner NC, Hahnenberger KM, Clarke L (1993) Centromeres of the fission yeast Schizosaccharomyces pombe are highly variable genetic loci. Mol Cell Biol 13:4578-4587
29. Stephan W (1989) Tandem-repetitive noncoding DNA: forms and forces. Mol Biol Evol 6:198-212
30. Stephan W, Cho S (1994) Possible role of natural selection in the formation of tandem-repetitive noncoding DNA. Genetics 136: 333-341
31. Sugita M, Manzara T, Pichersky E, Cashmore A, Gruissem W (1987) Genomic organization, sequence analysis and expression of all five genes encoding the small subunit of ribulose-1,5-biphosphate carboxylase/oxygenase from tomato. Mol Gen Genet 209: 247-256
32. Tanksley SD, Ganal MW, Prince JP, De Vicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AH, Pineda O, Roder MS, Wing RA, Wu W, Young ND (1992) High density molecular linkage maps of the tomato and potato genomes. Genetics 132:1141-1160
33. Vosman B, Arens P, Rus-Kortkaas W, Smulders MJM (1992) Identification of highly polymorphic DNA regions in tomato. Theor Appl Genet 85:239-244
34. Weber JL (1990) Informativeness of human (dC-d.A)n.(dG-dT)n polymorphisms. Genomics 7:524-530
35. Weber JL, May PE (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 44:388-396
36. Weising K, Weigand F, Driesel AJ, Kahl G, Zischler H, Epplen JT (1989) Polymorphic simple GATA/GACA repeats in plants genomes. Nucleic Acids Res 17:10128
37. Willard HF (1991) Evolution of alpha satellite. Curr Opin Genet Deve 1:509-514
38. Wu KS, Tanksley SD (1993) Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet 241:225-235
39. Zhao X, Kochert G (1992) Characterization and genetic mapping of a short, highly repeated, interspersed DNA sequence from rice (Oryza sativa L.). Mol Gen Genet 231:353-359
40. Zhao X, Kochert G (1993) Phylogenetic distribution and genetic mapping of a (GGC)n microsatellite from rice (Oryza sativa L.). Plant Mol Biol 21:607-614
41. Zischler H, Kammerbauer C, Studer R, Grzeschik KH, Epplen JT (1992) Dissecting (CAC)5/(GTG)5 multilocus fingerprints from man into individual locus-specific, hypervariable components. Genomics 13:983-990