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Volumn 10, Issue 4, 2000, Pages 411-416

Advances in zinc finger engineering

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; INTEGRASE; METHYLTRANSFERASE; TRANSCRIPTION FACTOR; ZINC FINGER PROTEIN;

EID: 0033930952     PISSN: 0959440X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0959-440X(00)00107-X     Document Type: Review
Times cited : (86)

References (43)
  • 1
    • 0029134134 scopus 로고
    • Designing DNA-binding proteins on the surface of filamentous phage
    • Choo Y., Klug A. Designing DNA-binding proteins on the surface of filamentous phage. Curr Opin Biotechnol. 6:1995;431-436.
    • (1995) Curr Opin Biotechnol , vol.6 , pp. 431-436
    • Choo, Y.1    Klug, A.2
  • 2
    • 0031042082 scopus 로고    scopus 로고
    • Physical basis of a protein-DNA recognition code
    • Choo Y., Klug A. Physical basis of a protein-DNA recognition code. Curr Opin Struct Biol. 7:1997;117-125.
    • (1997) Curr Opin Struct Biol , vol.7 , pp. 117-125
    • Choo, Y.1    Klug, A.2
  • 3
    • 0028328872 scopus 로고
    • Zinc finger phage: Affinity selection of fingers with new DNA-binding specificities
    • Rebar E.J., Pabo C.O. Zinc finger phage: affinity selection of fingers with new DNA-binding specificities. Science. 263:1994;671-673.
    • (1994) Science , vol.263 , pp. 671-673
    • Rebar, E.J.1    Pabo, C.O.2
  • 4
    • 0028227930 scopus 로고
    • In vitro selection of zinc fingers with altered DNA-binding specificity
    • Jamieson A.C., Kim S-H., Wells J.A. In vitro selection of zinc fingers with altered DNA-binding specificity. Biochemistry. 33:1994;5689-5695.
    • (1994) Biochemistry , vol.33 , pp. 5689-5695
    • Jamieson, A.C.1    Kim, S.-H.2    Wells, J.A.3
  • 5
    • 0027994717 scopus 로고
    • Toward a code for the interactions of zinc fingers with DNA: Selection of randomised zinc fingers displayed on phage
    • Choo Y., Klug A. Toward a code for the interactions of zinc fingers with DNA: selection of randomised zinc fingers displayed on phage. Proc Natl Acad Sci USA. 91:1994;11 163-11 167.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11163-11167
    • Choo, Y.1    Klug, A.2
  • 6
    • 0028888530 scopus 로고
    • Building zinc fingers by selection: Toward a therapeutic application
    • Wu H., Yang W-P., Barbas C.F. Jr. Building zinc fingers by selection: toward a therapeutic application. Proc Natl Acad Sci USA. 92:1995;344-348.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 344-348
    • Wu, H.1    Yang, W.-P.2    Barbas C.F., Jr.3
  • 7
    • 0028670569 scopus 로고
    • In vivo repression by a site-specific DNA-binding protein designed against an oncogenic sequence
    • Choo Y., Sanchez-Garcia I., Klug A. In vivo repression by a site-specific DNA-binding protein designed against an oncogenic sequence. Nature. 372:1994;642-645.
    • (1994) Nature , vol.372 , pp. 642-645
    • Choo, Y.1    Sanchez-Garcia, I.2    Klug, A.3
  • 8
    • 0030940295 scopus 로고    scopus 로고
    • Synergy between adjacent zinc fingers in sequence-specific DNA recognition
    • Isalan M., Choo Y., Klug A. Synergy between adjacent zinc fingers in sequence-specific DNA recognition. Proc Natl Acad Sci USA. 94:1997;5617-5621.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 5617-5621
    • Isalan, M.1    Choo, Y.2    Klug, A.3
  • 9
    • 0032168890 scopus 로고    scopus 로고
    • Comprehensive DNA recognition through concerted interactions from adjacent zinc fingers
    • Isalan M., Klug A., Choo Y. Comprehensive DNA recognition through concerted interactions from adjacent zinc fingers. Biochemistry. 37:1998;12 026-12 033.
    • (1998) Biochemistry , vol.37 , pp. 12026-12033
    • Isalan, M.1    Klug, A.2    Choo, Y.3
  • 10
    • 0031053362 scopus 로고    scopus 로고
    • A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites
    • Greisman H.A., Pabo C.O. A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites. Science. 275:1997;657-661.
    • (1997) Science , vol.275 , pp. 657-661
    • Greisman, H.A.1    Pabo, C.O.2
  • 11
    • 0032981699 scopus 로고    scopus 로고
    • Toward controlling gene expression at will: Selection and design of zinc finger domains recognising each of the 5′-GNN-3′ DNA target sequences
    • A library of the middle zinc finger of Zif268 was used to select variants that recognise the 16 different trinucleotides of the form GNN. These can be spliced to construct zinc finger polymers that bind DNA sequences in which guanine is repeated every three nucleotides. See also [18].
    • Segal D.J., Dreier B., Beerli R.R., Barbas C.F. Toward controlling gene expression at will: selection and design of zinc finger domains recognising each of the 5′-GNN-3′ DNA target sequences. Proc Natl Acad Sci USA. 96:1999;2758-2763. A library of the middle zinc finger of Zif268 was used to select variants that recognise the 16 different trinucleotides of the form GNN. These can be spliced to construct zinc finger polymers that bind DNA sequences in which guanine is repeated every three nucleotides. See also [18].
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 2758-2763
    • Segal, D.J.1    Dreier, B.2    Beerli, R.R.3    Barbas, C.F.4
  • 12
    • 0032539902 scopus 로고    scopus 로고
    • Getting a handhold on DNA: Design of poly-zinc finger proteins with femtomolar dissociation constants
    • Kim J-S., Pabo C.O. Getting a handhold on DNA: design of poly-zinc finger proteins with femtomolar dissociation constants. Proc Natl Acad Sci USA. 95:1998;2812-2817.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 2812-2817
    • Kim, J.-S.1    Pabo, C.O.2
  • 13
    • 0030903688 scopus 로고    scopus 로고
    • Design of polydactyl zinc-finger proteins for unique addressing within complex genomes
    • Liu Q., Segal D.J., Ghiara J.B., Barbas C.F. Jr. Design of polydactyl zinc-finger proteins for unique addressing within complex genomes. Proc Natl Acad Sci USA. 94:1997;5525-5530.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 5525-5530
    • Liu, Q.1    Segal, D.J.2    Ghiara, J.B.3    Barbas C.F., Jr.4
  • 14
    • 0028948325 scopus 로고
    • Structure based design of transcription factors
    • Pomerantz J.L., Sharp P.L., Pabo C.O. Structure based design of transcription factors. Science. 267:1995;93-96.
    • (1995) Science , vol.267 , pp. 93-96
    • Pomerantz, J.L.1    Sharp, P.L.2    Pabo, C.O.3
  • 15
    • 0030889195 scopus 로고    scopus 로고
    • Design of TATA box-binding protein/zinc finger fusions for targeted regulation of gene expression
    • Kim J-S., Kim J., Cepek K.L., Sharp P.A., Pabo C.O. Design of TATA box-binding protein/zinc finger fusions for targeted regulation of gene expression. Proc Natl Acad Sci USA. 94:1997;3616-3620.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 3616-3620
    • Kim, J.-S.1    Kim, J.2    Cepek, K.L.3    Sharp, P.A.4    Pabo, C.O.5
  • 16
    • 0030697441 scopus 로고    scopus 로고
    • Transcriptional repression by zinc finger peptides
    • Kim J-S., Pabo C.O. Transcriptional repression by zinc finger peptides. J Biol Chem. 272:1997;29 795-29 800.
    • (1997) J Biol Chem , vol.272 , pp. 29795-29800
    • Kim, J.-S.1    Pabo, C.O.2
  • 17
    • 0031592941 scopus 로고    scopus 로고
    • Promoter-specific activation of gene expression directed by bacteriophage-selected zinc fingers
    • Choo Y., Castellanos A., Garcia-Hernandez B., Sanchez-Garcia I., Klug A. Promoter-specific activation of gene expression directed by bacteriophage-selected zinc fingers. J Mol Biol. 273:1997;525-532.
    • (1997) J Mol Biol , vol.273 , pp. 525-532
    • Choo, Y.1    Castellanos, A.2    Garcia-Hernandez, B.3    Sanchez-Garcia, I.4    Klug, A.5
  • 18
    • 0032437591 scopus 로고    scopus 로고
    • Toward controlling gene expression at will: Specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks
    • Beerli R.R., Segal D.J., Dreier B., Barbas C.F. Toward controlling gene expression at will: specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks. Proc Natl Acad Sci USA. 95:1998;14 628-14 633.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14628-14633
    • Beerli, R.R.1    Segal, D.J.2    Dreier, B.3    Barbas, C.F.4
  • 19
    • 0034652141 scopus 로고    scopus 로고
    • Positive and negative regulation of endogenous genes by designed transcription factors
    • Following on from the results described in [18], transcription factors designed against the erbB-2 and erbB-3 oncogene promoters were used to regulate these genes in transient transfection of the breast cancer cell line SKBR3.
    • Beerli R.R., Dreier B., Barbas C.F. Positive and negative regulation of endogenous genes by designed transcription factors. Proc Natl Acad Sci USA. 97:2000;1495-1500. Following on from the results described in [18], transcription factors designed against the erbB-2 and erbB-3 oncogene promoters were used to regulate these genes in transient transfection of the breast cancer cell line SKBR3.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 1495-1500
    • Beerli, R.R.1    Dreier, B.2    Barbas, C.F.3
  • 20
    • 0032876974 scopus 로고    scopus 로고
    • Chimaeric restriction enzymes: What is next?
    • Chandrasegaran S., Smith J. Chimaeric restriction enzymes: what is next? Biol Chem. 380:1999;841-848.
    • (1999) Biol Chem , vol.380 , pp. 841-848
    • Chandrasegaran, S.1    Smith, J.2
  • 21
    • 0031060377 scopus 로고    scopus 로고
    • Tethering human immunodeficiency virus type 1 preintegration complexes to target DNA promotes integration at nearby sites
    • Bushman F.D., Miller M.D. Tethering human immunodeficiency virus type 1 preintegration complexes to target DNA promotes integration at nearby sites. J Virol. 71:1997;458-464.
    • (1997) J Virol , vol.71 , pp. 458-464
    • Bushman, F.D.1    Miller, M.D.2
  • 22
    • 84984766752 scopus 로고    scopus 로고
    • Cytosine methylation targeted to predetermined sequences
    • Xu G-L., Bestor T.H. Cytosine methylation targeted to predetermined sequences. Nat Genet. 17:1997;376-378.
    • (1997) Nat Genet , vol.17 , pp. 376-378
    • Xu, G.-L.1    Bestor, T.H.2
  • 23
    • 0025773296 scopus 로고
    • Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 Å
    • Pavletich N.P., Pabo C.O. Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 Å Science. 252:1991;809-817.
    • (1991) Science , vol.252 , pp. 809-817
    • Pavletich, N.P.1    Pabo, C.O.2
  • 24
    • 0030587774 scopus 로고    scopus 로고
    • Zif268 protein-DNA complex refined at 1.6 Å: A model system for understanding zinc finger interactions
    • Elrod-Erickson M., Rould M.A., Nekludova L., Pabo C.O. Zif268 protein-DNA complex refined at 1.6 Å: a model system for understanding zinc finger interactions. Structure. 4:1996;1171-1180.
    • (1996) Structure , vol.4 , pp. 1171-1180
    • Elrod-Erickson, M.1    Rould, M.A.2    Nekludova, L.3    Pabo, C.O.4
  • 25
    • 0031959911 scopus 로고    scopus 로고
    • Recognition of DNA methylation by zinc fingers
    • Choo Y. Recognition of DNA methylation by zinc fingers. Nat Struct Biol. 5:1998;264-265.
    • (1998) Nat Struct Biol , vol.5 , pp. 264-265
    • Choo, Y.1
  • 26
    • 0034695430 scopus 로고    scopus 로고
    • Engineered zinc finger proteins that recognise DNA modification by HaeIII and HhaI methyltransferase enzymes
    • Following on from the results in [25], it is shown that bacterial methyltransferases can be used to induce zinc finger-DNA binding through the modification of the DNA.
    • Isalan M., Choo Y. Engineered zinc finger proteins that recognise DNA modification by HaeIII and HhaI methyltransferase enzymes. J Mol Biol. 295:2000;471-477. Following on from the results in [25], it is shown that bacterial methyltransferases can be used to induce zinc finger-DNA binding through the modification of the DNA.
    • (2000) J Mol Biol , vol.295 , pp. 471-477
    • Isalan, M.1    Choo, Y.2
  • 27
    • 0033524954 scopus 로고    scopus 로고
    • Analysis of zinc fingers optimised via phage display: Evaluating the utility of a recognition code
    • Wolfe S.A., Greisman H.A., Ramm E.I., Pabo C.O. Analysis of zinc fingers optimised via phage display: evaluating the utility of a recognition code. J Mol Biol. 285:1999;1917-1934.
    • (1999) J Mol Biol , vol.285 , pp. 1917-1934
    • Wolfe, S.A.1    Greisman, H.A.2    Ramm, E.I.3    Pabo, C.O.4
  • 28
    • 0026742626 scopus 로고
    • Toward rules relating zinc finger protein sequences and DNA binding site preferences
    • Desjarlais J.R., Berg J.M. Toward rules relating zinc finger protein sequences and DNA binding site preferences. Proc Natl Acad Sci USA. 89:1992;7345-7349.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 7345-7349
    • Desjarlais, J.R.1    Berg, J.M.2
  • 29
    • 0027401045 scopus 로고
    • Use of a zinc finger consensus sequence framework and specificity rules to design specific DNA binding proteins
    • Desjarlais J.R., Berg J.M. Use of a zinc finger consensus sequence framework and specificity rules to design specific DNA binding proteins. Proc Natl Acad Sci USA. 90:1993;2256-2260.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 2256-2260
    • Desjarlais, J.R.1    Berg, J.M.2
  • 30
    • 0028046895 scopus 로고
    • Selection of DNA binding sites for zinc fingers using rationally randomised DNA reveals coded interactions
    • Choo Y., Klug A. Selection of DNA binding sites for zinc fingers using rationally randomised DNA reveals coded interactions. Proc Natl Acad Sci USA. 91:1994;11 168-11 172.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11168-11172
    • Choo, Y.1    Klug, A.2
  • 31
    • 0032522662 scopus 로고    scopus 로고
    • High-resolution structures of variant Zif268-DNA complexes: Implications for understanding zinc finger-DNA recognition
    • Elrod-Erickson M., Benson T.E., Pabo C.O. High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure. 6:1998;451-464.
    • (1998) Structure , vol.6 , pp. 451-464
    • Elrod-Erickson, M.1    Benson, T.E.2    Pabo, C.O.3
  • 32
    • 0030716480 scopus 로고    scopus 로고
    • Synthesis of a new zinc finger peptide; Comparison of its 'code' deduced and 'CASTing' derived binding sites
    • Corbi N., Perez M., Maione R., Passananti C. Synthesis of a new zinc finger peptide; comparison of its 'code' deduced and 'CASTing' derived binding sites. FEBS Lett. 417:1997;71-74.
    • (1997) FEBS Lett , vol.417 , pp. 71-74
    • Corbi, N.1    Perez, M.2    Maione, R.3    Passananti, C.4
  • 34
    • 0032570259 scopus 로고    scopus 로고
    • Structure-based design of a dimeric zinc finger protein
    • Pomerantz J.L., Wolfe S.A., Pabo C.O. Structure-based design of a dimeric zinc finger protein. Biochemistry. 37:1998;965-970.
    • (1998) Biochemistry , vol.37 , pp. 965-970
    • Pomerantz, J.L.1    Wolfe, S.A.2    Pabo, C.O.3
  • 35
    • 0033578395 scopus 로고    scopus 로고
    • Dimerisation of zinc fingers mediated by peptides evolved in vitro from random sequences
    • This paper reports the imaginative use of polyvalent phage display to select peptide sequences that are capable of mediating zinc finger homodimerisation on DNA. The DNA-binding domains recognise perfectly adjacent inverted repeats (c.f. [34]).
    • Wang B.S., Pabo C.O. Dimerisation of zinc fingers mediated by peptides evolved in vitro from random sequences. Proc Natl Acad Sci USA. 96:1999;9568-9573. This paper reports the imaginative use of polyvalent phage display to select peptide sequences that are capable of mediating zinc finger homodimerisation on DNA. The DNA-binding domains recognise perfectly adjacent inverted repeats (c.f. [34]).
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 9568-9573
    • Wang, B.S.1    Pabo, C.O.2
  • 36
    • 0026714393 scopus 로고
    • Adjacent zinc-finger motifs in multiple zinc-finger peptides from SWI5 form structurally independent, flexibly linked domains
    • Nakaseko Y., Neuhaus D., Klug A., Rhodes D. Adjacent zinc-finger motifs in multiple zinc-finger peptides from SWI5 form structurally independent, flexibly linked domains. J Mol Biol. 228:1992;619-636.
    • (1992) J Mol Biol , vol.228 , pp. 619-636
    • Nakaseko, Y.1    Neuhaus, D.2    Klug, A.3    Rhodes, D.4
  • 37
  • 38
    • 0029693537 scopus 로고    scopus 로고
    • From repression domains to designer finger proteins: A novel strategy of intracellular immunisation against HIV
    • Thiesen H.J. From repression domains to designer finger proteins: a novel strategy of intracellular immunisation against HIV. Gene Expr. 5:1996;229-243.
    • (1996) Gene Expr , vol.5 , pp. 229-243
    • Thiesen, H.J.1
  • 39
    • 0032029590 scopus 로고    scopus 로고
    • Targeting a truncated HO-endonuclease of yeast to novel DNA sites with foreign zinc fingers
    • Nahon E., Raveh D. Targeting a truncated HO-endonuclease of yeast to novel DNA sites with foreign zinc fingers. Nucleic Acids Res. 26:1998;1233-1239.
    • (1998) Nucleic Acids Res , vol.26 , pp. 1233-1239
    • Nahon, E.1    Raveh, D.2
  • 40
    • 0033556128 scopus 로고    scopus 로고
    • A detailed study of the substrate specificity of a chimaeric restriction enzyme
    • Smith J., Berg J.M., Chandrasegaran S. A detailed study of the substrate specificity of a chimaeric restriction enzyme. Nucleic Acids Res. 27:1999;674-681.
    • (1999) Nucleic Acids Res , vol.27 , pp. 674-681
    • Smith, J.1    Berg, J.M.2    Chandrasegaran, S.3
  • 41
    • 26744443749 scopus 로고    scopus 로고
    • Stimulation of homologous recombination through targeted cleavage by a chimaeric nuclease
    • in press. A FokI-zinc finger chimaeric nuclease was used to cut microinjected DNA targets in frog oocytes. Site-specific cleavage directs homologous recombination to specific sites within the genome.
    • Carroll D., Segal D.J., Trautman J.K., Smith J., Kim Y-G., Chandrasegaran S. Stimulation of homologous recombination through targeted cleavage by a chimaeric nuclease. Proc Natl Acad Sci USA. 2000;. in press. A FokI-zinc finger chimaeric nuclease was used to cut microinjected DNA targets in frog oocytes. Site-specific cleavage directs homologous recombination to specific sites within the genome.
    • (2000) Proc Natl Acad Sci USA
    • Carroll, D.1    Segal, D.J.2    Trautman, J.K.3    Smith, J.4    Kim, Y.-G.5    Chandrasegaran, S.6
  • 42
    • 0001679585 scopus 로고    scopus 로고
    • Zinc finger proteins as designer transcription factors
    • Kang J.S., Kim J-S. Zinc finger proteins as designer transcription factors. J Biol Chem. 275:2000;8742-8748.
    • (2000) J Biol Chem , vol.275 , pp. 8742-8748
    • Kang, J.S.1    Kim, J.-S.2
  • 43
    • 85031584337 scopus 로고    scopus 로고
    • International Patent Application Number WO98/53057. A universal method to engineer customised DNA-binding domains. Premade libraries allow the rapid screening of target sites, while harnessing the synergy between adjacent zinc fingers (see Figure 1c). The process is illustrated by targeting multiple sites in the HIV-1 promoter
    • Isalan, M.D., Klug, A., Choo. Y. International Patent Application Number WO98/53057. A universal method to engineer customised DNA-binding domains. Premade libraries allow the rapid screening of target sites, while harnessing the synergy between adjacent zinc fingers (see Figure 1c). The process is illustrated by targeting multiple sites in the HIV-1 promoter.
    • Isalan, M.D.1    Klug, A.2    Choo, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.