메뉴 건너뛰기




Volumn 291, Issue 4, 1999, Pages 789-799

Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC

Author keywords

Chromosome banding; Extended MHC; G+C content; Isochore; Single nucleotide polymorphism (SNP); Synteny breakpoint

Indexed keywords

HLA DP ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2;

EID: 0033609808     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.3004     Document Type: Article
Times cited : (54)

References (53)
  • 1
  • 2
    • 0027181134 scopus 로고
    • The PROSITE dictionary of sites and patterns in proteins, its current status
    • Bairoch A. The PROSITE dictionary of sites and patterns in proteins, its current status. Nucl. Acids Res. 21:1993;3097-3103.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 3097-3103
    • Bairoch, A.1
  • 3
    • 0023462732 scopus 로고
    • Random cloning and sequencing by the M13/dideoxynucleotide chain termination method
    • Bankier A. T., Weston K. M., Barrell B. G. Random cloning and sequencing by the M13/dideoxynucleotide chain termination method. Methods Enzymol. 155:1987;51-93.
    • (1987) Methods Enzymol. , vol.155 , pp. 51-93
    • Bankier, A.T.1    Weston, K.M.2    Barrell, B.G.3
  • 4
    • 0027265638 scopus 로고
    • A strategy for the amplification, purification, and selection of M13 templates for large-scale DNA sequencing
    • Beck S., Alderton R. P. A strategy for the amplification, purification, and selection of M13 templates for large-scale DNA sequencing. Anal. Biochem. 212:1993;498-505.
    • (1993) Anal. Biochem. , vol.212 , pp. 498-505
    • Beck, S.1    Alderton, R.P.2
  • 6
    • 0027722232 scopus 로고
    • The isochore organization of the human genome and its evolutionary history - A review
    • Bernardi G. The isochore organization of the human genome and its evolutionary history - a review. Gene. 135:1993;57-66.
    • (1993) Gene , vol.135 , pp. 57-66
    • Bernardi, G.1
  • 8
    • 0018406331 scopus 로고
    • Collagen heterogeneity in human cartilage: Identification of several new collagen chains
    • Burgeson R. E., Hollister D. W. Collagen heterogeneity in human cartilage: identification of several new collagen chains. Biochem. Biophys. Res. Commun. 87:1979;1124-1131.
    • (1979) Biochem. Biophys. Res. Commun. , vol.87 , pp. 1124-1131
    • Burgeson, R.E.1    Hollister, D.W.2
  • 9
    • 0032544309 scopus 로고    scopus 로고
    • Activation of apoptosis signal-regulating kinase 1 (ASK1) by the adapter protein Daxx
    • Chang H. Y., Nishitoh H., Yang X., Ichijo H., Baltimore D. Activation of apoptosis signal-regulating kinase 1 (ASK1) by the adapter protein Daxx. Science. 281:1998;1860-1863.
    • (1998) Science , vol.281 , pp. 1860-1863
    • Chang, H.Y.1    Nishitoh, H.2    Yang, X.3    Ichijo, H.4    Baltimore, D.5
  • 10
    • 0027604577 scopus 로고
    • Chromosome bands - flavours to savour
    • Craig J. M., Bickmore W. A. Chromosome bands - flavours to savour. BioEssays. 15:1993;349-354.
    • (1993) BioEssays , vol.15 , pp. 349-354
    • Craig, J.M.1    Bickmore, W.A.2
  • 11
    • 0031593209 scopus 로고    scopus 로고
    • Evolutionary significance of intra-genome duplications on human chromosomes
    • Endo T., Imanishi T., Gojobori T., Inoko H. Evolutionary significance of intra-genome duplications on human chromosomes. Gene. 205:1997;19-27.
    • (1997) Gene , vol.205 , pp. 19-27
    • Endo, T.1    Imanishi, T.2    Gojobori, T.3    Inoko, H.4
  • 12
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • Fitch W. M. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20:1971;406-416.
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 13
    • 0028898562 scopus 로고
    • A boundary of long-range G+C% mosaic domains in the human MHC locus: Pseudoautosomal boundary-like sequence exists near the boundary
    • Fukagawa T., Sugaya K., Matsumoto K., Okumura K., Ando A., Inoko H., Ikemura T. A boundary of long-range G+C% mosaic domains in the human MHC locus: pseudoautosomal boundary-like sequence exists near the boundary. Genomics. 25:1995;184-191.
    • (1995) Genomics , vol.25 , pp. 184-191
    • Fukagawa, T.1    Sugaya, K.2    Matsumoto, K.3    Okumura, K.4    Ando, A.5    Inoko, H.6    Ikemura, T.7
  • 14
    • 0030026645 scopus 로고    scopus 로고
    • Human pseudoautosomal boundary-like sequences: Expression and involvement in evolutionary formation of the present-day pseudoautosomal boundary of human sex chromosomes
    • Fukagawa T., Nakamura Y., Okumura K., Nogami M., Ando A., Inoko H., Saitou N., Ikemura T. Human pseudoautosomal boundary-like sequences: expression and involvement in evolutionary formation of the present-day pseudoautosomal boundary of human sex chromosomes. Hum. Mol. Genet. 5:1996;23-32.
    • (1996) Hum. Mol. Genet. , vol.5 , pp. 23-32
    • Fukagawa, T.1    Nakamura, Y.2    Okumura, K.3    Nogami, M.4    Ando, A.5    Inoko, H.6    Saitou, N.7    Ikemura, T.8
  • 15
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO WIN: Two graphic tools for sequence alignment and molecular phologeny
    • Galtier N., Gouy M., Gautier C. SEAVIEW and PHYLO WIN: two graphic tools for sequence alignment and molecular phologeny. Comput. Appl. Biosci. 12:1996;543-548.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 16
    • 0025856958 scopus 로고
    • Colinearity of novel genes in the class II regions of the MHC in mouse and human
    • Hanson I. M., Trowsdale J. Colinearity of novel genes in the class II regions of the MHC in mouse and human. Immunogenet. 34:1991;5-11.
    • (1991) Immunogenet. , vol.34 , pp. 5-11
    • Hanson, I.M.1    Trowsdale, J.2
  • 17
    • 0032502810 scopus 로고    scopus 로고
    • TAPASIN, DAXX, RGL2, HKE2 and four new genes (BING 1, 3 to 5) form a dense cluster at the centromeric end of the MHC
    • Herberg J. A., Beck S., Trowsdale J. TAPASIN, DAXX, RGL2, HKE2 and four new genes (BING 1, 3 to 5) form a dense cluster at the centromeric end of the MHC. J. Mol. Biol. 277:1998a;839-857.
    • (1998) J. Mol. Biol. , vol.277 , pp. 839-857
    • Herberg, J.A.1    Beck, S.2    Trowsdale, J.3
  • 19
    • 0032508672 scopus 로고    scopus 로고
    • Large-scale sequence comparisons reveal unusually high levels of variation in the HLA-DQB1 locus in the class II region of the human MHC
    • Horton R., Niblett D., Milne S., Palmer S., Tubby B., Trowsdale J., Beck S. Large-scale sequence comparisons reveal unusually high levels of variation in the HLA-DQB1 locus in the class II region of the human MHC. J. Mol. Biol. 282:1998;71-97.
    • (1998) J. Mol. Biol. , vol.282 , pp. 71-97
    • Horton, R.1    Niblett, D.2    Milne, S.3    Palmer, S.4    Tubby, B.5    Trowsdale, J.6    Beck, S.7
  • 21
    • 0032898781 scopus 로고    scopus 로고
    • The chromosomal duplication model of the major histocompatibility complex
    • Kasahara M. The chromosomal duplication model of the major histocompatibility complex. Immunol. Rev. 167:1999;17-32.
    • (1999) Immunol. Rev. , vol.167 , pp. 17-32
    • Kasahara, M.1
  • 22
    • 0031570689 scopus 로고    scopus 로고
    • Physical mapping 220 kb centromeric of the human MHC and DNA sequence analysis of the 43-kb segment including the RING1, HKE6, and HKE4 genes
    • Kikuti Y. Y., Tamiya G., Ando A., Chen L., Kimura M., Ferreira E., Tsuji K., Trowsdale J., Inoko H. Physical mapping 220 kb centromeric of the human MHC and DNA sequence analysis of the 43-kb segment including the RING1, HKE6, and HKE4 genes. Genomics. 42:1997;422-435.
    • (1997) Genomics , vol.42 , pp. 422-435
    • Kikuti, Y.Y.1    Tamiya, G.2    Ando, A.3    Chen, L.4    Kimura, M.5    Ferreira, E.6    Tsuji, K.7    Trowsdale, J.8    Inoko, H.9
  • 23
    • 0028031177 scopus 로고
    • Genomic organization and expressed sequences of the mouse extended H-2 K region
    • Lai F., Stubbs L., Lehrach H., Huang Y., Yeom Y., Artzt K. Genomic organization and expressed sequences of the mouse extended H-2 K region. Genomics. 23:1994;338-343.
    • (1994) Genomics , vol.23 , pp. 338-343
    • Lai, F.1    Stubbs, L.2    Lehrach, H.3    Huang, Y.4    Yeom, Y.5    Artzt, K.6
  • 24
    • 0029918429 scopus 로고    scopus 로고
    • The human alpha 2(XI) collagen gene (COL11A2): Completion of coding information, identification of the promoter sequence, and precise localization within the major histocompatibility complex reveal overlap with the KE5 gene
    • Lui V. C., Ng L. J., Sat E. W., Cheah K. S. The human alpha 2(XI) collagen gene (COL11A2): completion of coding information, identification of the promoter sequence, and precise localization within the major histocompatibility complex reveal overlap with the KE5 gene. Genomics. 32:1996a;401-412.
    • (1996) Genomics , vol.32 , pp. 401-412
    • Lui, V.C.1    Ng, L.J.2    Sat, E.W.3    Cheah, K.S.4
  • 25
    • 8944244526 scopus 로고    scopus 로고
    • Extensive alternative splicing within the amino-propeptide coding domain of alpha2(XI) procollagen mRNAs. Expression of transcripts encoding truncated pro-alpha chains
    • Lui V. C. H., Ng L. J., Sat E. W. Y., Nicholls J., Cheah K. S. E. Extensive alternative splicing within the amino-propeptide coding domain of alpha2(XI) procollagen mRNAs. Expression of transcripts encoding truncated pro-alpha chains. J. Biol. Chem. 271:1996b;16945-16951.
    • (1996) J. Biol. Chem. , vol.271 , pp. 16945-16951
    • Lui, V.C.H.1    Ng, L.J.2    Sat, E.W.Y.3    Nicholls, J.4    Cheah, K.S.E.5
  • 26
    • 0031571122 scopus 로고    scopus 로고
    • Heterogeneity in rates of recombination in the 6 Mb region telomeric to the human major histocompatibility complex
    • Malfroy L., Roth M. P., Carrington M., Borot N., Volz A., Ziegler A., Coppin H. Heterogeneity in rates of recombination in the 6 Mb region telomeric to the human major histocompatibility complex. Genomics. 43:1997;226-231.
    • (1997) Genomics , vol.43 , pp. 226-231
    • Malfroy, L.1    Roth, M.P.2    Carrington, M.3    Borot, N.4    Volz, A.5    Ziegler, A.6    Coppin, H.7
  • 27
    • 0028238133 scopus 로고
    • High-throughput detergent extraction of M13 subclones for fluorescent DNA sequencing
    • Mardis E. R. High-throughput detergent extraction of M13 subclones for fluorescent DNA sequencing. Nucl. Acids Res. 22:1994;2173-2175.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 2173-2175
    • Mardis, E.R.1
  • 28
    • 0032972509 scopus 로고    scopus 로고
    • PSORT: A program for detecting sorting signals in proteins and predicting their subcellular localization
    • Nakai K., Horton P. PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci. 24:1999;34-36.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 34-36
    • Nakai, K.1    Horton, P.2
  • 29
    • 0027105007 scopus 로고
    • A knowledge base for predicting protein localization sites in eukaryotic cells
    • Nakai K., Kanehisa M. A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics. 14:1992;897-911.
    • (1992) Genomics , vol.14 , pp. 897-911
    • Nakai, K.1    Kanehisa, M.2
  • 32
    • 0028263626 scopus 로고
    • Genomic organization of HLA-DMA and HLA-DMB. Comparison of the gene organization of all six class II families in the human major histocompatibility complex
    • Radley E., Alderton R. P., Kelly A., Trowsdale J., Beck S. Genomic organization of HLA-DMA and HLA-DMB. Comparison of the gene organization of all six class II families in the human major histocompatibility complex. J. Biol. Chem. 269:1994;18834-18838.
    • (1994) J. Biol. Chem. , vol.269 , pp. 18834-18838
    • Radley, E.1    Alderton, R.P.2    Kelly, A.3    Trowsdale, J.4    Beck, S.5
  • 34
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saittou M., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. J. Mol. Evol. 4:1987;406-425.
    • (1987) J. Mol. Evol. , vol.4 , pp. 406-425
    • Saittou, M.1    Nei, M.2
  • 37
    • 0027236346 scopus 로고
    • Fine mapping of the human MHC class II region within chromosome band 6p21 and evaluation of probe ordering using interphase fluorescence in situ hybridization
    • Senger G., Ragoussis J., Trowsdale J., Sheer D. Fine mapping of the human MHC class II region within chromosome band 6p21 and evaluation of probe ordering using interphase fluorescence in situ hybridization. Cytogenet. Cell Genet. 64:1993;49-53.
    • (1993) Cytogenet. Cell Genet. , vol.64 , pp. 49-53
    • Senger, G.1    Ragoussis, J.2    Trowsdale, J.3    Sheer, D.4
  • 40
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
    • Sonnhammer E. L., Durbin R. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene. 167:1995;Gc1-10.
    • (1995) Gene , vol.167 , pp. 1-10
    • Sonnhammer, E.L.1    Durbin, R.2
  • 42
    • 0027957087 scopus 로고
    • Three genes in the human MHC class III region near the junction with the class II: Gene for receptor of advanced glycosylation end products, PBX2 homeobox genes and a Notch homolog, human counterpart of mouse mammary tumor gene int-3
    • Sugaya K., Fukagawa T., Matsumoto K., Mita K., Takahashi E., Ando A., Inoko H., Ikemura T. Three genes in the human MHC class III region near the junction with the class II: gene for receptor of advanced glycosylation end products, PBX2 homeobox genes and a Notch homolog, human counterpart of mouse mammary tumor gene int-3. Genomics. 23:1994;408-419.
    • (1994) Genomics , vol.23 , pp. 408-419
    • Sugaya, K.1    Fukagawa, T.2    Matsumoto, K.3    Mita, K.4    Takahashi, E.5    Ando, A.6    Inoko, H.7    Ikemura, T.8
  • 43
    • 0031461574 scopus 로고    scopus 로고
    • Cloning localisation and structure of new members of the butyrophilin gene family in the juxta-telomeric region of the major histocompatibility complex
    • Tazi-Ahnini R., Henry J., Offer C., Bouissou-Bouchouata C., Mather I. H., Pontarotti P. Cloning localisation and structure of new members of the butyrophilin gene family in the juxta-telomeric region of the major histocompatibility complex. Immunogenet. 47:1997;55-63.
    • (1997) Immunogenet. , vol.47 , pp. 55-63
    • Tazi-Ahnini, R.1    Henry, J.2    Offer, C.3    Bouissou-Bouchouata, C.4    Mather, I.H.5    Pontarotti, P.6
  • 45
    • 0032428045 scopus 로고    scopus 로고
    • Genome Res. 8:1998;1097-1108.
    • (1998) Genome Res. , vol.8 , pp. 1097-1108
  • 46
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple alignment aided by quality analysis tools
    • Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. H. The CLUSTAL X windows interface: flexible strategies for multiple alignment aided by quality analysis tools. Nucl. Acids Res. 25:1997;4876-4882.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.H.5
  • 47
    • 0028959321 scopus 로고
    • Differential expression of an acidic domain in the amino-terminal propeptide of mouse pro-alpha 2(XI) collagen by complex alternative splicing
    • Tsumaki N., Kimura T. Differential expression of an acidic domain in the amino-terminal propeptide of mouse pro-alpha 2(XI) collagen by complex alternative splicing. J. Biol. Chem. 270:1995;2372-2378.
    • (1995) J. Biol. Chem. , vol.270 , pp. 2372-2378
    • Tsumaki, N.1    Kimura, T.2
  • 48
    • 0029819450 scopus 로고    scopus 로고
    • Separable cis-regulatory elements that contribute to tissue- And site-specific alpha 2(XI) collagen gene expression in the embryonic mouse cartilage
    • Tsumaki N., Kimura T., Matsui Y., Nakata K., Ochi T. Separable cis-regulatory elements that contribute to tissue- and site-specific alpha 2(XI) collagen gene expression in the embryonic mouse cartilage. J. Cell Biol. 134:1996;1573-1582.
    • (1996) J. Cell Biol. , vol.134 , pp. 1573-1582
    • Tsumaki, N.1    Kimura, T.2    Matsui, Y.3    Nakata, K.4    Ochi, T.5
  • 49
    • 0032483337 scopus 로고    scopus 로고
    • Modular arrangement of cartilage- And neural tissue-specific cis-elements in the mouse alpha2(XI) collagen promoter
    • Tsumaki N., Kimura T., Tanaka K., Kimura J. H., Ochi T., Yamada Y. Modular arrangement of cartilage- and neural tissue-specific cis-elements in the mouse alpha2(XI) collagen promoter. J. Biol. Chem. 273:1998;22861-22864.
    • (1998) J. Biol. Chem. , vol.273 , pp. 22861-22864
    • Tsumaki, N.1    Kimura, T.2    Tanaka, K.3    Kimura, J.H.4    Ochi, T.5    Yamada, Y.6
  • 50
    • 0030273910 scopus 로고    scopus 로고
    • The mouse col11a2 gene. Some transcripts from the adjacent rxr-beta gene extend into the col11a2 gene
    • Vandenberg P., Vuoristo M. M., Ala Kokko L., Prockop D. J. The mouse col11a2 gene. Some transcripts from the adjacent rxr-beta gene extend into the col11a2 gene. Matrix Biol. 15:1996;359-367.
    • (1996) Matrix Biol. , vol.15 , pp. 359-367
    • Vandenberg, P.1    Vuoristo, M.M.2    Ala, K.L.3    Prockop, D.J.4
  • 51
    • 0032531125 scopus 로고    scopus 로고
    • Identification of a novel highly conserved gene in the centromeric part of the MHC
    • Walter L., Günther E. Identification of a novel highly conserved gene in the centromeric part of the MHC. Genomics. 52:1998;298-304.
    • (1998) Genomics , vol.52 , pp. 298-304
    • Walter, L.1    Günther, E.2
  • 52
    • 0030015330 scopus 로고    scopus 로고
    • Physical mapping of the Ring1, Ring2, Ke6, Ke4, Rxrb, Col11a2, and RT1. Hb genes in the rat major histocompatibility complex
    • Walter L., Fischer K., Günther E. Physical mapping of the Ring1, Ring2, Ke6, Ke4, Rxrb, Col11a2, and RT1. Hb genes in the rat major histocompatibility complex. Immunogenet. 44:1996;218-221.
    • (1996) Immunogenet. , vol.44 , pp. 218-221
    • Walter, L.1    Fischer, K.2    Günther, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.