A 1.1-Mb transcript map of the hereditary hemochromatosis locus

Genome Research

Volumn 7, Issue 5, 1997, Pages 441-456

  Ruddy, David A ^a   Kronmal, Gregory S ^a   Lee, Vincent K ^a   Mintier, Gabriel A ^a   Quintana, Leah ^a   Domingo Jr , Rodolfo ^a   Meyer, Nicole C ^a   Irrinki, Alivelu ^a   McClelland, Erin E ^a   Fullan, Amy ^a   Mapa, Felipa A ^a   Moore, Theodore ^a   Thomas, Winston ^a   Loeb, Deborah B ^a   Harmon, Cyrus ^b   Tsuchihashi, Zenta ^a   Wolff, Roger K ^a   Schatzman, Randall C ^a   Feder, John N ^a  

^a Mercator Genetics Inc   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOANTIGEN; CARRIER PROTEIN; COMPLEMENTARY DNA; DNA; HISTONE; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; MESSENGER RNA; SODIUM DIHYDROGEN PHOSPHATE;

ARTICLE; CHROMOSOME 6P; CONTROLLED STUDY; DNA SEQUENCE; EXON; FETUS; GENE MAPPING; GENE STRUCTURE; HEMOCHROMATOSIS; HISTOCOMPATIBILITY GENE; HUMAN; HUMAN TISSUE; LUPUS VULGARIS; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SJOEGREN SYNDROME;

EID: 15444340362     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.7.5.441     Document Type: Article

References (31)

1. Aaronson, J.S., B. Eckman, R.A. Blevins, J.A. Borkowski, J. Myerson, S. Imran, and K.O. Elliston. 1996. Toward the development of a gene index to the human genome: An assessment of the nature of high-throughput EST sequence data. Genome Res. 6: 829-845.
2. Altschul, S.F., W. Gish, W. Miller, E.W. Myers, and D.J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
3. Amadou, C., M.T. Ribouchon, M.G. Mattel, N.A. Jenkins, D.J. Gilbert, N.G. Copeland, P. Avoustin, and P. Pontarotti. 1995. Localization of new genes and markers to the distal part of the human major histocompatibility complex (MHC) region and comparison with the mouse: New insights into the evolution of mammalian genomes. Genomics 26: 9-20.
4. Anderson, J.R., K.G. Gray, J.S. Beck, and W.F. Kinnear. 1961. Precipitating autoantibodies in Sjorgren's disease. Lancet 2: 456-560.
5. Birnstiel, M.L., M. Busslinger, and K. Strub. 1985. Transcription termination and 3′ processing: The end is in site. Cell 41: 349-359.
6. Bonaldo, M., G. Lennon, and M.B. Soares. 1996. Normalization and subtraction: Two approaches to facilitate gene discovery. Genome Res. 6: 791-806.
7. Buckler, A.J., D.D. Chang, S.L. Graw, J.D. Brook, D.A. Haber, P.A. Sharp, and D.E. Housman. 1991. Exon amplification: A strategy to isolate mammalian genes based on RNA splicing. Proc. Natl. Acad. Sci. 88: 4005-4009.
8. Chong, S.S., K. Kristjansson, H.Y. Zoghbi, and M.R. Hughes. 1993. Molecular cloning of the cDNA encoding a human renal sodium phosphate transport protein and its assignment to chromosome 6p21.3-p23. Genomics 18: 355-359.
9. Church, D.M., C.J. Stotler, J.L. Rutter, J.R. Murrell, J.A. Trofatter, and A.J. Buckler. 1994. Isolation of genes from complex sources of mammalian DNA using exon amplification. Nature Genet. 6: 98-105.
10. Clark, G., M. Reichlin, and T.B. Tomasi Jr. 1969. Characterization of a soluble cytoplasmic antigen reactive with sera from patients with systemic lupus erythematosus. J. Immunol. 1O2: 117-122.
11. Feder, J.N., A. Gnirke, W. Thomas, Z. Tsuchihashi, D.A. Ruddy, A. Basava, F. Dormishian, R.J. Domingo, M.C. Ellis, A. Fullan, L.M. Hinton, N.L. Jones, B.E. Kimmel, G.S. Kronmal, P. Lauer, V.K. Lee, D.B. Loeb, F.A. Mapa, E. McClelland, N.C. Meyer, G.A. Mintier, N. Moeller, T. Moore, E. Morikang, C.E. Prass, L. Quintana, S.M. Stranes, R.C. Schatzman, K.J. Brunke, D.T. Drayna, N.J. Risch, B.R. Bacon, and R.K. Wolff. 1996. A novel MHC class 1-like gene is mutated in patients with hereditary haemochromatosis. Nature Genet. 13: 399-408.
12. Frank, M.B. and M.G. Mattei. 1994. Mapping of the human 6000M(r) Ro/SSA locus: The genes for three Ro/SSA autoantigens are located on separate chromosomes. Immunogenetics 39: 428-431.
13. Frank, M.B., V.R. McCubbin, and C. Heldermon. 1995. Expression and DNA binding of the human 52 kDa Ro/SSA autoantigen. Biochem. J. 305: 359-362.
14. Franke, W.W., H.W. Heid, C. Grund, S. Winter, C. Freudenstein, E. Schmid, E.D. Jarasch, and T.W. Keenan. 1981. Antibodies to major insoluble milk fat globule membrane-associated protein: Specific location in apical regions of lactating epithelial cells. J. Cell Biol. 89: 485-494.
15. Freemont, P.S., I.M. Hanson, and J. Trowsdale. 1991. A novel cysteine-rich sequence motif. Cell 64: 483-484.
16. Isomura, T., K. Tamiya-Koizumi, M. Suzuki, S. Yoshida, M. Taniguchi, M. Matsuyama, T. Ishigaki, S. Sakuma, and M. Takahashi. 1992. RFP is a DNA binding protein associated with the nuclear matrix. Nucleic Acid Res. 20: 5305-5310.
17. Jack, L.J. and I.H. Mather. 1990. Cloning and analysis of cDNA encoding bovine butyrophilin, an apical glycoprotein expressed in mammary tissue and secreted in association with the milk-fat globule membrane during lactation. J. Biol. Chem. 265: 14481-14486.
18. Lauer, P., N.C. Meyer, C.E. Prass, S.M. Starnes, R.K. Wolff, and A. Gnirke. 1997. Clone-contig and STS maps of the hereditary hemochromatosis region on human chromosome 6p21.3-p22. Genome Res. (this issue).
19. Levy-Lahad, E., W. Wasco, P. Poorkaj, D.M. Romano, J. Oshima, W.H. Pettingell, C. Yu, P.D. Jondro, S.D. Schmidt, K. Wang, A.C. Crowley, Y. Fu, S.Y. Guenette, D. Galas, E. Nemens, E.M. Wijsman, T.D. Bird, G.D. Schellenberg, and R. Tanzi. 1995. Candidate gene for the chromosome 1 familial Alzheimer's disease locus. Science 269: 973-977.
20. Lovett, M., J. Kere, and L.M. Hinton. 1991. Direct selection: A method for the isolation of cDNA's encoded by large genomic regions. Proc. Natl. Acad. Sci. 88: 9628-9632.
21. Miller, M.M., R. Goto, S. Young, J. Chirivella, D. Hawke, and C.G. Miyada. 1991. Immunoglobulin variable-region-like domains of diverse sequences within the major histocompatibility complex of the chicken. Proc. Natl. Acad. Sci. 88: 4377-4381.
22. Morgan, J.G., G.M. Dolganov, S.E. Robbins, L.M. Hinton, and M. Lovett. 1992. The selective isolation of novel cDNAs encoded by the regions surrounding the human interleukin 4 and 5 genes. Nucleic Acids Res. 20: 5173-5179.
23. Pearson, W.R. and D.J. Lipman. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. 85: 2444-2448.
24. Rasmussen, H. and H.S. Tenenhouse. 1989. Hypophosphatemias. In The metabolic basis of inherited disease (ed. C.R. Scriver, A.L. Beaudet, W.S. Sly, and D. Valle), pp. 2581-2604, McGraw-Hill, New York, NY.
25. Rommens, J.M., M.C. Iannuzzi, B. Kerem, M.L. Drumm, G. Melmer, M. Dean, R. Rozmahel, L.J. Cole, D. Kennedy, N. Hidaka, M. Zsiga, M. Buchwald, J.R. Riordan, L. Tsui, and F.S. Collins. 1989. Identification of the cystic fibrosis gene: Chromosome walking and jumping. Science 245: 1059-1065.
26. Savitsky, K., A. Bar-Shira, S. Gilad, G. Rotman, Y. Ziv, L. Vanagaite, D.A. Tagle, S. Smith, T. Uziel, S. Sfez, M. Ashkenazi, I. Pecker, M. Frydman, R. Harnik, S.R. Patanjali, A. Simmons, G.A. Clines, A. Sartiel, R.A. Gatti, L. Chessa, O. Sanal, M.F. Lavin, N.G.J. Jaspers, A.M.R. Taylor, C.F. Arlett, T. Miki, S.M. Weissman, M. Lovett, F.S. Collins, and Y. Shiloh. 1995. A single ataxia telangiectasia gene with a product similar to PI-3 kinase. Science 268: 1749-1753.
27. Sherrington, R., E.I. Rogaev, Y. Liang, E.A. Rogaeva, G. Lovesque, M. Ikeda, H. Chi, C. Lin, G. Li, K. Holman, T. Tsuda, L. Mar, J.-F. Foncin, A.C. Bruni, M.P. Montesi, S. Sorbi, I. Rainero, L. Pinessi, L. Nee, I. Chumakov, D. Pollen, A. Brookes, P. Sanseau, R.J. Polinsky, W. Wasco, H.A.R. Da Silva, J.L. Haines, M.A. Perlcak-Vance, R.E. Tanzi, A.D. Roses, P.E. Fraser, J.M. Rommens, and P.H. St. George-Hyslop. 1995. Cloning of a gene bearing missense mutations in early-onset familial Alzheimer's disease. Nature 375: 754-760.
28. Strathmann, M., B.A. Hamilton, C.A. Mayeda, M.I. Simon, E.M. Meyerowitz, and M.J. Palazzolo. 1991. Transposon-facilitated DNA sequencing. Proc. Natl. Acad. Sci. 88: 1247-1250.
29. Taylor, M.R., J.A. Peterson, R.L. Ceriani, and J.R. Couto. 1996. Cloning and sequence analysis of human butyrophilin reveals a potential receptor function. Biochim. Biophys. Acta 1306: 1-4.
30. Vernet, C., J. Boretto, M. Mattei, M. Takahashi, L.J.W. Jack, I.H. Mather, S. Rouquier, and P. Pontarotti. 1993. Evolutionary study of multigenic families mapping close to the human MHC class 1 region. J. Mol. Evol. 37: 600-612.
31. Yu, C.H., J. Oshima, Y. Fu, E.M. Wijsman, F. Hisama, R. Alisch, S. Matthews, J. Nakura, T. Miki, S. Ouais, G.M. Martin, J. Mulligan, and G.D. Schellenberg. 1996. Positional cloning of the Werner's syndrome gene. Science 272: 258-262.