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Volumn 17, Issue 7, 1997, Pages 4043-4050

Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DNA; GUANINE; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 3; POLYNUCLEOTIDE; PURINE; PYRIMIDINE;

EID: 0030917145     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.17.7.4043     Document Type: Article
Times cited : (83)

References (58)
  • 1
    • 0023057525 scopus 로고
    • Diversity in G+C content at the third position of codons in vertebrate genes and its cause
    • Aota, S., and T. Ikemura. 1986. Diversity in G+C content at the third position of codons in vertebrate genes and its cause. Nucleic Acids Res. 14:6345-6355.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 6345-6355
    • Aota, S.1    Ikemura, T.2
  • 2
    • 0026019599 scopus 로고
    • Formation of DNA triplexes accounts for arrests of DNA synthesis at d(TC)n and d(GA)n tracts
    • Baran, N., A. Lapidot, and H. Manor. 1991. Formation of DNA triplexes accounts for arrests of DNA synthesis at d(TC)n and d(GA)n tracts. Proc. Natl. Acad. Sci. USA 88:507-511.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 507-511
    • Baran, N.1    Lapidot, A.2    Manor, H.3
  • 3
    • 0024805395 scopus 로고
    • The isochore organization of the human genome
    • Bernardi, G. 1989. The isochore organization of the human genome. Annu. Rev. Genet. 23:637-661.
    • (1989) Annu. Rev. Genet. , vol.23 , pp. 637-661
    • Bernardi, G.1
  • 4
    • 0027722232 scopus 로고
    • The isochore organization of the human genome and its evolutionary history - A review
    • Bernardi, G. 1993. The isochore organization of the human genome and its evolutionary history - a review. Gene 135:57-66.
    • (1993) Gene , vol.135 , pp. 57-66
    • Bernardi, G.1
  • 7
    • 0020823373 scopus 로고
    • Proteins tightly bound to HeLa cell DNA at nuclear matrix attachment sites
    • Bodnar, J. W., C. J. Jones, D. H. Coombs, G. D. Pearson, and D. C. Ward. 1983. Proteins tightly bound to HeLa cell DNA at nuclear matrix attachment sites. Mol. Cell. Biol. 3:1567-1579.
    • (1983) Mol. Cell. Biol. , vol.3 , pp. 1567-1579
    • Bodnar, J.W.1    Jones, C.J.2    Coombs, D.H.3    Pearson, G.D.4    Ward, D.C.5
  • 8
    • 0025731987 scopus 로고
    • Position and orientation-dependent effects of a eukaryotic Z-triplex DNA motif on episomal DNA replication in COS-7 cells
    • Brinton, B. T., M. S. Caddie, and N. H. Heintz. 1991. Position and orientation-dependent effects of a eukaryotic Z-triplex DNA motif on episomal DNA replication in COS-7 cells. J. Biol. Chem. 266:5153-5161.
    • (1991) J. Biol. Chem. , vol.266 , pp. 5153-5161
    • Brinton, B.T.1    Caddie, M.S.2    Heintz, N.H.3
  • 9
    • 0025834699 scopus 로고
    • Avian nuclear matrix proteins bind very tightly to cellular DNA of the b-globin gene enhancer in a tissue-specific fashion
    • Brotherton, T., D. Zenk, S. Kahanic, and J. Reneker. 1991. Avian nuclear matrix proteins bind very tightly to cellular DNA of the b-globin gene enhancer in a tissue-specific fashion. Biochemistry 30:5845-5850.
    • (1991) Biochemistry , vol.30 , pp. 5845-5850
    • Brotherton, T.1    Zenk, D.2    Kahanic, S.3    Reneker, J.4
  • 11
    • 0026752685 scopus 로고
    • Purification of BrdUrd-substituted DNA by immunoaffinity chromatography with anti-BrdUrd antibodies
    • Contreas, G., M. Giacca, and A. Falaschi. 1992. Purification of BrdUrd-substituted DNA by immunoaffinity chromatography with anti-BrdUrd antibodies. BioTechniques 12:824-825.
    • (1992) BioTechniques , vol.12 , pp. 824-825
    • Contreas, G.1    Giacca, M.2    Falaschi, A.3
  • 12
    • 0027604577 scopus 로고
    • Chromosome bands - Flavours to savour
    • Craig, J. M., and W. A. Bickmore. 1993. Chromosome bands - flavours to savour. BioEssays 15:349-354.
    • (1993) BioEssays , vol.15 , pp. 349-354
    • Craig, J.M.1    Bickmore, W.A.2
  • 13
    • 0024245405 scopus 로고
    • Identification of attachment proteins for DNA in Chinese hamster ovary cells
    • Cress, A. E., and K. M. Kurath. 1988. Identification of attachment proteins for DNA in Chinese hamster ovary cells. J. Biol. Chem. 263:19678-19683.
    • (1988) J. Biol. Chem. , vol.263 , pp. 19678-19683
    • Cress, A.E.1    Kurath, K.M.2
  • 14
    • 0026466862 scopus 로고
    • Intramolecular DNA triplexes: Unusual sequence requirements and influence on DNA polymerization
    • Dayn, A., G. M. Samadashwily, and S. M. Mirkin. 1992. Intramolecular DNA triplexes: unusual sequence requirements and influence on DNA polymerization. Proc. Natl. Acad. Sci. USA 89:11406-11410.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 11406-11410
    • Dayn, A.1    Samadashwily, G.M.2    Mirkin, S.M.3
  • 15
  • 16
    • 0028652716 scopus 로고
    • High-resolution replication bands compared with morphologic G- and R-bands
    • Drouin, R., G. P. Holmquist, and C.-L. Richer. 1994. High-resolution replication bands compared with morphologic G-and R-bands. Adv. Hum. Genet. 22:47-115.
    • (1994) Adv. Hum. Genet. , vol.22 , pp. 47-115
    • Drouin, R.1    Holmquist, G.P.2    Richer, C.-L.3
  • 17
    • 0024843575 scopus 로고
    • The mammalian pseudoautosomal region
    • Ellis, N., and P. N. Goodfellow. 1989. The mammalian pseudoautosomal region. Trends Genet. 5:406-410.
    • (1989) Trends Genet. , vol.5 , pp. 406-410
    • Ellis, N.1    Goodfellow, P.N.2
  • 18
    • 0025651769 scopus 로고
    • Evolution of the pseudoautosomal boundary in Old World monkeys and great apes
    • Ellis, N., P. Yen, K. Neiswanger, L. J. Shapiro, and P. N. Goodfellow. 1990. Evolution of the pseudoautosomal boundary in Old World monkeys and great apes. Cell 63:977-986.
    • (1990) Cell , vol.63 , pp. 977-986
    • Ellis, N.1    Yen, P.2    Neiswanger, K.3    Shapiro, L.J.4    Goodfellow, P.N.5
  • 19
    • 0024538135 scopus 로고
    • The pseudoautosomal boundary in man is defined by an Alu repeat sequence inserted on the Y chromosome
    • Ellis, N. A., P. J. Goodfellow, B. Pym, M. Smith, M. Palmer, A.-M. Frischauf, and P. N. Goodfellow. 1989. The pseudoautosomal boundary in man is defined by an Alu repeat sequence inserted on the Y chromosome. Nature 337:81-84.
    • (1989) Nature , vol.337 , pp. 81-84
    • Ellis, N.A.1    Goodfellow, P.J.2    Pym, B.3    Smith, M.4    Palmer, M.5    Frischauf, A.-M.6    Goodfellow, P.N.7
  • 21
    • 0030026645 scopus 로고    scopus 로고
    • Human pseudoautosomal boundary-like sequences: Expression and involvement in evolutionary formation of the present-day pseudoautosomal boundary of human sex chromosomes
    • Fukagawa, T., Y. Nakamura, K. Okumura, M. Nogami, A. Ando, H. Inoko, N. Saitou, and T. Ikemura. 1996. Human pseudoautosomal boundary-like sequences: expression and involvement in evolutionary formation of the present-day pseudoautosomal boundary of human sex chromosomes. Hum. Mol. Genet. 5:23-32.
    • (1996) Hum. Mol. Genet. , vol.5 , pp. 23-32
    • Fukagawa, T.1    Nakamura, Y.2    Okumura, K.3    Nogami, M.4    Ando, A.5    Inoko, H.6    Saitou, N.7    Ikemura, T.8
  • 22
    • 0028898562 scopus 로고
    • A boundary of long-range G+C% mosaic domains in the human MHC locus: Pseudoautosomal boundary-like sequence exists near the boundary
    • Fukagawa, T., K. Sugaya, K. Matsumoto, K. Okumura, A. Ando, H. Inoko, and T. Ikemura. 1995. A boundary of long-range G+C% mosaic domains in the human MHC locus: pseudoautosomal boundary-like sequence exists near the boundary. Genomics 25:184-191.
    • (1995) Genomics , vol.25 , pp. 184-191
    • Fukagawa, T.1    Sugaya, K.2    Matsumoto, K.3    Okumura, K.4    Ando, A.5    Inoko, H.6    Ikemura, T.7
  • 23
    • 0025369193 scopus 로고
    • A compositional map of human chromosome 21
    • Gardiner, K., B. Aissani, and G. Bernardi. 1990. A compositional map of human chromosome 21. EMBO J. 9:1853-1858.
    • (1990) EMBO J. , vol.9 , pp. 1853-1858
    • Gardiner, K.1    Aissani, B.2    Bernardi, G.3
  • 24
    • 0025355882 scopus 로고
    • Analysis of cytokine mRNA and DNA: Detection and quantitation by competitive polymerase chain reaction
    • Gilliland, G., S. Perrin, K. Blanchard, and H. F. Bunn. 1990. Analysis of cytokine mRNA and DNA: detection and quantitation by competitive polymerase chain reaction. Proc. Natl. Acad. Sci. USA 87:2725-2729.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 2725-2729
    • Gilliland, G.1    Perrin, S.2    Blanchard, K.3    Bunn, H.F.4
  • 25
    • 0021362841 scopus 로고
    • Replication timing of genes and middle repetitive sequences
    • Goldman, M. A., G. P. Holmquist, M. C. Gray, L. A. Caston, and A. Nag. 1984. Replication timing of genes and middle repetitive sequences. Science 224:686-692.
    • (1984) Science , vol.224 , pp. 686-692
    • Goldman, M.A.1    Holmquist, G.P.2    Gray, M.C.3    Caston, L.A.4    Nag, A.5
  • 26
    • 0024277944 scopus 로고
    • A consensus sequence of three DNA replication terminus sites on the E. coli chromosome is highly homologous to the terR sites of the R6K plasmid
    • Hidaka, M., M. Akiyama, and T. Horiuchi. 1988. A consensus sequence of three DNA replication terminus sites on the E. coli chromosome is highly homologous to the terR sites of the R6K plasmid. Cell 55:467-475.
    • (1988) Cell , vol.55 , pp. 467-475
    • Hidaka, M.1    Akiyama, M.2    Horiuchi, T.3
  • 27
    • 0020357520 scopus 로고
    • Characterization of Giemsa dark- and light-band DNA
    • Holmquist, G., M. Gray, T. Porter, and J. Jordan. 1982. Characterization of Giemsa dark-and light-band DNA. Cell 31:121-129.
    • (1982) Cell , vol.31 , pp. 121-129
    • Holmquist, G.1    Gray, M.2    Porter, T.3    Jordan, J.4
  • 28
    • 0024332738 scopus 로고
    • Evolution of chromosome bands: Molecular ecology of noncoding DNA
    • Holmquist, G. P. 1989. Evolution of chromosome bands: molecular ecology of noncoding DNA. J. Mol. Evol. 28:469-486.
    • (1989) J. Mol. Evol. , vol.28 , pp. 469-486
    • Holmquist, G.P.1
  • 29
    • 0026890665 scopus 로고
    • Chromosome bands, their chromatin flavors, and their functional features
    • Holmquist, G. P. 1992. Chromosome bands, their chromatin flavors, and their functional features. Am. J. Hum. Genet. 51:17-37.
    • (1992) Am. J. Hum. Genet. , vol.51 , pp. 17-37
    • Holmquist, G.P.1
  • 30
    • 0014413470 scopus 로고
    • On the mechanism of DNA replication in mammalian chromosomes
    • Huberman, J. A., and A. D. Riggs. 1968. On the mechanism of DNA replication in mammalian chromosomes. J. Mol. Biol. 32:327-341.
    • (1968) J. Mol. Biol. , vol.32 , pp. 327-341
    • Huberman, J.A.1    Riggs, A.D.2
  • 31
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura, T. 1985. Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol. 2:13-34.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 13-34
    • Ikemura, T.1
  • 32
    • 0023734742 scopus 로고
    • Global variation in G+C content along vertebrate genome DNA: Possible correlation with chromosome band structures
    • Ikemura, T., and S. Aota. 1988. Global variation in G+C content along vertebrate genome DNA: possible correlation with chromosome band structures. J. Mol. Biol. 203:1-13.
    • (1988) J. Mol. Biol. , vol.203 , pp. 1-13
    • Ikemura, T.1    Aota, S.2
  • 33
    • 0025744599 scopus 로고
    • Evident diversity of codon usage patterns of human genes with respect to chromosome banding patterns and chromosome numbers; relation between nucleotide sequence data and cytogenetic data
    • Ikemura. T., and K. Wada. 1991. Evident diversity of codon usage patterns of human genes with respect to chromosome banding patterns and chromosome numbers; relation between nucleotide sequence data and cytogenetic data. Nucleic Acids Res. 19:4333-4339.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4333-4339
    • Ikemura, T.1    Wada, K.2
  • 34
    • 0025049305 scopus 로고
    • Giant G+C% mosaic structures of the human genome found by arrangement of GenBank human DNA sequences according to genetic positions
    • Ikemura, T., K. Wada, and S. Aota. 1990. Giant G+C% mosaic structures of the human genome found by arrangement of GenBank human DNA sequences according to genetic positions. Genomics 8:207-216.
    • (1990) Genomics , vol.8 , pp. 207-216
    • Ikemura, T.1    Wada, K.2    Aota, S.3
  • 35
    • 0025135578 scopus 로고
    • The size of chromatin loops in HeLa cells
    • Jackson, D. A., P. Dickinson, and P. R. Cook. 1990. The size of chromatin loops in HeLa cells. EMBO J. 9:567-571.
    • (1990) EMBO J. , vol.9 , pp. 567-571
    • Jackson, D.A.1    Dickinson, P.2    Cook, P.R.3
  • 36
    • 0023773201 scopus 로고
    • A gentle method for preparing cyto- and nucleo-skeletons and associated chromatin
    • Jackson, D. A., J. Yuan, and P. R. Cook. 1988. A gentle method for preparing cyto-and nucleo-skeletons and associated chromatin. J. Cell Sci. 90:365-378.
    • (1988) J. Cell Sci. , vol.90 , pp. 365-378
    • Jackson, D.A.1    Yuan, J.2    Cook, P.R.3
  • 37
    • 0025174082 scopus 로고
    • Novel families of interspersed repetitive elements from the human genome
    • Jurka, J. 1990. Novel families of interspersed repetitive elements from the human genome. Nucleic Acids Res. 18:137-141.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 137-141
    • Jurka, J.1
  • 38
    • 0016739508 scopus 로고
    • The temporal structure of S phase
    • Klevecz, R. R., B. A. Keniston, and L. L. Deaven. 1975. The temporal structure of S phase. Cell 5:195-203.
    • (1975) Cell , vol.5 , pp. 195-203
    • Klevecz, R.R.1    Keniston, B.A.2    Deaven, L.L.3
  • 39
    • 0026645055 scopus 로고
    • Identification of a site required for DNA replication fork blocking activity in the rRNA gene cluster in Saccharomyces cerevisiae
    • Kobayashi, T., M. Hidaka, M. Nishizawa, and T. Horiuchi. 1992. Identification of a site required for DNA replication fork blocking activity in the rRNA gene cluster in Saccharomyces cerevisiae. Mol. Gen. Genet. 233:355-362.
    • (1992) Mol. Gen. Genet. , vol.233 , pp. 355-362
    • Kobayashi, T.1    Hidaka, M.2    Nishizawa, M.3    Horiuchi, T.4
  • 40
    • 0027486027 scopus 로고
    • Initiation and termination of DNA replication in human rRNA genes
    • Little, R. D., T. H. K. Platt, and C. L. Schildkraut. 1993. Initiation and termination of DNA replication in human rRNA genes. Mol. Cell. Biol. 13:6600-6613.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 6600-6613
    • Little, R.D.1    Platt, T.H.K.2    Schildkraut, C.L.3
  • 41
    • 0026606265 scopus 로고
    • Cluster of fibronectin type III repeats found in the human major histocompatibility complex class III region shows the highest homology with the repeats in an extracellular matrix protein, tenascin
    • Matsumoto, K., M. Arai, N. Ishihara, A. Ando, H. Inoko, and T. Ikemura. 1992. Cluster of fibronectin type III repeats found in the human major histocompatibility complex class III region shows the highest homology with the repeats in an extracellular matrix protein, tenascin. Genomics 12:485-491.
    • (1992) Genomics , vol.12 , pp. 485-491
    • Matsumoto, K.1    Arai, M.2    Ishihara, N.3    Ando, A.4    Inoko, H.5    Ikemura, T.6
  • 42
    • 0022504648 scopus 로고
    • Structural organizations of replicon domains during DNA synthetic phase in the mammalian nucleus
    • Nakamura, H., T. Morita, and C. Sato. 1986. Structural organizations of replicon domains during DNA synthetic phase in the mammalian nucleus. Exp. Cell Res. 165:291-297.
    • (1986) Exp. Cell Res. , vol.165 , pp. 291-297
    • Nakamura, H.1    Morita, T.2    Sato, C.3
  • 43
    • 85036492828 scopus 로고    scopus 로고
    • Unpublished data
    • Okumura, K. Unpublished data.
    • Okumura, K.1
  • 46
    • 0028329734 scopus 로고
    • Pausing of simian virus 40 DNA replication fork movement in vivo by (dG-dA)n · (dT-dC)n tracts
    • Rao, B. S. 1994. Pausing of simian virus 40 DNA replication fork movement in vivo by (dG-dA)n · (dT-dC)n tracts. Gene 140:233-237.
    • (1994) Gene , vol.140 , pp. 233-237
    • Rao, B.S.1
  • 47
    • 0019816865 scopus 로고
    • Proteins tightly bound to DNA in the regions of DNA attachment to the skeletal structures of interphase nuclei and metaphase chromosomes
    • Razin, S. V., V. V. Chernokhvostov, A. V. Roodyn, I. B. Zbarsky, and G. P. Georgiev. 1981. Proteins tightly bound to DNA in the regions of DNA attachment to the skeletal structures of interphase nuclei and metaphase chromosomes. Cell 27:65-73.
    • (1981) Cell , vol.27 , pp. 65-73
    • Razin, S.V.1    Chernokhvostov, V.V.2    Roodyn, A.V.3    Zbarsky, I.B.4    Georgiev, G.P.5
  • 49
    • 0025785398 scopus 로고
    • Structural topography of simian virus 40 DNA replication
    • Schirmbeck, R., and W. Deppert. 1991. Structural topography of simian virus 40 DNA replication. J. Virol. 65:2578-2588.
    • (1991) J. Virol. , vol.65 , pp. 2578-2588
    • Schirmbeck, R.1    Deppert, W.2
  • 50
    • 0027236346 scopus 로고
    • Fine mapping of the human MHC class II region within chromosome hand 6p21 and evaluation of probe ordering using interphase fluorescence in situ hybridization
    • Senger, G., J. Ragoussis, J. Trowsdale, and D. Sheer. 1993. Fine mapping of the human MHC class II region within chromosome hand 6p21 and evaluation of probe ordering using interphase fluorescence in situ hybridization. Cytogenet. Cell Genet. 64:49-53.
    • (1993) Cytogenet. Cell Genet. , vol.64 , pp. 49-53
    • Senger, G.1    Ragoussis, J.2    Trowsdale, J.3    Sheer, D.4
  • 51
    • 0027161465 scopus 로고
    • Regional base composition variation along yeast chromosome III: Evolution of chromosome primary structure
    • Sharp, P. M., and A. T. Lloyd. 1993. Regional base composition variation along yeast chromosome III: evolution of chromosome primary structure. Nucleic Acids Res. 21:179-183.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 179-183
    • Sharp, P.M.1    Lloyd, A.T.2
  • 52
    • 0027115336 scopus 로고
    • Competitive PCR
    • Siebert, P. D., and J. W. Larriek. 1992. Competitive PCR. Nature 359:557-558.
    • (1992) Nature , vol.359 , pp. 557-558
    • Siebert, P.D.1    Larriek, J.W.2
  • 53
    • 0026687886 scopus 로고
    • Temporal order of DNA replication in the H-2 major histocompatibility complex of the mouse
    • Spack, E. G., E. D. Lewis, B. Paradowski, R. T. Schimke, and P. P. Jones. 1992. Temporal order of DNA replication in the H-2 major histocompatibility complex of the mouse. Mol. Cell. Biol. 12:5174-5188.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 5174-5188
    • Spack, E.G.1    Lewis, E.D.2    Paradowski, B.3    Schimke, R.T.4    Jones, P.P.5
  • 55
    • 0027957087 scopus 로고
    • Three genes in the human MHC class III region near the junction with the class II: Gene for receptor of advanced glycosylation end products, PBX2 homeobox gene and a Notch homolog, human counterpart of mouse mammary tumor gene int-3
    • Sugaya, K., T. Fukagawa, K. Matsumoto, K. Mita, E. Takahashi, A. Ando, H. Inoko, and T. Ikemura. 1994. Three genes in the human MHC class III region near the junction with the class II: gene for receptor of advanced glycosylation end products, PBX2 homeobox gene and a Notch homolog, human counterpart of mouse mammary tumor gene int-3. Genomics 23:408-419.
    • (1994) Genomics , vol.23 , pp. 408-419
    • Sugaya, K.1    Fukagawa, T.2    Matsumoto, K.3    Mita, K.4    Takahashi, E.5    Ando, A.6    Inoko, H.7    Ikemura, T.8
  • 58
    • 0028929362 scopus 로고
    • Mapping of replication initiation sites in human ribosomal DNA by nascent-strand abundance analysis
    • Yoon, Y., J. A. Sanchez, C. Brun, and J. A. Huberman. 1995. Mapping of replication initiation sites in human ribosomal DNA by nascent-strand abundance analysis. Mol. Cell. Biol. 15:2482-2489.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 2482-2489
    • Yoon, Y.1    Sanchez, J.A.2    Brun, C.3    Huberman, J.A.4


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