메뉴 건너뛰기




Volumn 82, Issue 2-3, 1999, Pages 165-171

Proportion of membrane proteins in proteomes of 15 single-cell organisms analyzed by the SOSUI prediction system

Author keywords

Bioinformatics; Genome; Membrane protein; Prediction; Proteome

Indexed keywords

MEMBRANE PROTEIN;

EID: 0033552649     PISSN: 03014622     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0301-4622(99)00116-7     Document Type: Conference Paper
Times cited : (49)

References (35)
  • 3
    • 0030764671 scopus 로고    scopus 로고
    • Protein structural classes in five complete genomes
    • Frishman D., Mewes H.W. Protein structural classes in five complete genomes. Nat. Struct. Biol. 4:1997;625-628.
    • (1997) Nat. Struct. Biol. , vol.4 , pp. 625-628
    • Frishman, D.1    Mewes, H.W.2
  • 4
    • 0030837927 scopus 로고    scopus 로고
    • Are there dominant membrane protein families with a given number of helices?
    • Arkin I.T., Brunger A.T., Engelman D.M. Are there dominant membrane protein families with a given number of helices? Proteins. 28:1997;465-466.
    • (1997) Proteins , vol.28 , pp. 465-466
    • Arkin, I.T.1    Brunger, A.T.2    Engelman, D.M.3
  • 5
    • 0031954925 scopus 로고    scopus 로고
    • Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms
    • Wallin E., von Heijne G. Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci. 7:1998;1029-1038.
    • (1998) Protein Sci. , vol.7 , pp. 1029-1038
    • Wallin, E.1    Von Heijne, G.2
  • 6
    • 0032570779 scopus 로고    scopus 로고
    • Do transmembrane protein superfolds exist?
    • Jones D.T. Do transmembrane protein superfolds exist? FEBS Lett. 423:1998;281-285.
    • (1998) FEBS Lett. , vol.423 , pp. 281-285
    • Jones, D.T.1
  • 7
    • 0000762607 scopus 로고
    • Quantitative application of the helical hairpin hypothesis to membrane proteins
    • Steitz T.A., Goldman A., Engelman D.M. Quantitative application of the helical hairpin hypothesis to membrane proteins. Biophys. J. 37:1982;124-125.
    • (1982) Biophys. J. , vol.37 , pp. 124-125
    • Steitz, T.A.1    Goldman, A.2    Engelman, D.M.3
  • 8
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:1982;105-132.
    • (1982) J. Mol. Biol. , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 9
  • 10
    • 0021518391 scopus 로고
    • Spectral analysis of amino acid sequence. I. Intrinsic membrane proteins
    • Mitaku S., Hoshi S., Abe T., Kataoka R. Spectral analysis of amino acid sequence. I. Intrinsic membrane proteins. J. Phys. Soc. Jpn. 53:1984;4083-4090.
    • (1984) J. Phys. Soc. Jpn. , vol.53 , pp. 4083-4090
    • Mitaku, S.1    Hoshi, S.2    Abe, T.3    Kataoka, R.4
  • 11
    • 0022062465 scopus 로고
    • Spectral analysis of amino acid sequence. II. Characterization of ?-helices by local periodicity
    • Mitaku S., Hoshi S., Kataoka R. Spectral analysis of amino acid sequence. II. Characterization of ?-helices by local periodicity. J. Phys. Soc. Jpn. 54:1985;2047-2054.
    • (1985) J. Phys. Soc. Jpn. , vol.54 , pp. 2047-2054
    • Mitaku, S.1    Hoshi, S.2    Kataoka, R.3
  • 12
    • 0024346677 scopus 로고
    • Hydrophobic organization of membrane proteins
    • Rees D.C., DeAntonio L., Eisenberg D. Hydrophobic organization of membrane proteins. Science. 245:1989;510-513.
    • (1989) Science , vol.245 , pp. 510-513
    • Rees, D.C.1    DeAntonio, L.2    Eisenberg, D.3
  • 13
    • 0025190086 scopus 로고
    • Structure prediction of membrane proteins are not that bad
    • Jähnig F. Structure prediction of membrane proteins are not that bad. TIBS. 15:1990;93-95.
    • (1990) TIBS , vol.15 , pp. 93-95
    • Jähnig, F.1
  • 14
    • 0028211273 scopus 로고
    • A model recognition approach to the prediction of all-helical membrane protein structure and topology
    • Jones D.T., Taylor W.R., Thornton J.M. A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry. 33:1994;3038-3049.
    • (1994) Biochemistry , vol.33 , pp. 3038-3049
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 15
    • 0026716643 scopus 로고
    • Membrane protein structure prediction - Hydrophobicity analysis and the positive-inside rule
    • von Heijne G. Membrane protein structure prediction - hydrophobicity analysis and the positive-inside rule. J. Mol. Biol. 225:1992;487-494.
    • (1992) J. Mol. Biol. , vol.225 , pp. 487-494
    • Von Heijne, G.1
  • 16
    • 0028279520 scopus 로고
    • Prediction of transmembrane segments in proteins utilizing multiple sequence alignments
    • Persson B., Argos P. Prediction of transmembrane segments in proteins utilizing multiple sequence alignments. J. Mol. Biol. 237:1994;182-192.
    • (1994) J. Mol. Biol. , vol.237 , pp. 182-192
    • Persson, B.1    Argos, P.2
  • 17
    • 0342351613 scopus 로고
    • Predicting the orientation of eukaryotic membrane-spanning proteins
    • Hartmann E., Rapoport T.A., Lodish H.F. Predicting the orientation of eukaryotic membrane-spanning proteins. Proc. Natl. Acad. Sci. USA. 86:1989;5786-5790.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 5786-5790
    • Hartmann, E.1    Rapoport, T.A.2    Lodish, H.F.3
  • 18
    • 0021847027 scopus 로고
    • The detection and classification of membrane-spanning proteins
    • Klein P., Kanehisa M., DeLisi C. The detection and classification of membrane-spanning proteins. Biochim. Biophys. Acta. 815:1985;468-476.
    • (1985) Biochim. Biophys. Acta , vol.815 , pp. 468-476
    • Klein, P.1    Kanehisa, M.2    DeLisi, C.3
  • 19
    • 0031826040 scopus 로고    scopus 로고
    • SOSUI: Classification and secondary structure prediction system for membrane proteins
    • Hirokawa T., Boon-Chieng S., Mitaku S. SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinformatics. 14:1998;378-379.
    • (1998) Bioinformatics , vol.14 , pp. 378-379
    • Hirokawa, T.1    Boon-Chieng, S.2    Mitaku, S.3
  • 20
    • 0028829125 scopus 로고
    • The minimal gene complement of Mycoplasma genitalium
    • Fraser C.M., Gocayne J.D., White O. et al. The minimal gene complement of Mycoplasma genitalium. Science. 270:1995;397-403.
    • (1995) Science , vol.270 , pp. 397-403
    • Fraser, C.M.1    Gocayne, J.D.2    White, O.3
  • 22
    • 0032561496 scopus 로고    scopus 로고
    • Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis
    • Stephens R.S., Kalman S., Lammel C. et al. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. Science. 282:1998;754-759.
    • (1998) Science , vol.282 , pp. 754-759
    • Stephens, R.S.1    Kalman, S.2    Lammel, C.3
  • 23
    • 0032540874 scopus 로고    scopus 로고
    • Complete genome sequence of Treponema pallidum, the syphilis spirochete
    • Fraser C.M., Norris S.J., Weinstock G.M. et al. Complete genome sequence of Treponema pallidum, the syphilis spirochete. Science. 281:1998;375-388.
    • (1998) Science , vol.281 , pp. 375-388
    • Fraser, C.M.1    Norris, S.J.2    Weinstock, G.M.3
  • 24
    • 0031470826 scopus 로고    scopus 로고
    • Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
    • Fraser C.M., Casjens S., Huang W.M. et al. Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature. 390:1997;580-586.
    • (1997) Nature , vol.390 , pp. 580-586
    • Fraser, C.M.1    Casjens, S.2    Huang, W.M.3
  • 25
    • 0032568375 scopus 로고    scopus 로고
    • The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
    • Deckert G., Warren P.V., Gaasterland T. et al. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature. 392:1998;353-358.
    • (1998) Nature , vol.392 , pp. 353-358
    • Deckert, G.1    Warren, P.V.2    Gaasterland, T.3
  • 26
    • 0030835739 scopus 로고    scopus 로고
    • The complete genome sequence of the gastric pathogen Helicobacter pylori
    • Tomb J.F., White O., Kerlavage A.R. et al. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature. 388:1997;539-547.
    • (1997) Nature , vol.388 , pp. 539-547
    • Tomb, J.F.1    White, O.2    Kerlavage, A.R.3
  • 27
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleishmann R.D., Adams M.D., White O. et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science. 269:1995;496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleishmann, R.D.1    Adams, M.D.2    White, O.3
  • 28
    • 0030606607 scopus 로고    scopus 로고
    • Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
    • Kaneko T., Sato S., Kotani H. et al. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 3:1996;109-136.
    • (1996) DNA Res. , vol.3 , pp. 109-136
    • Kaneko, T.1    Sato, S.2    Kotani, H.3
  • 29
    • 0030731108 scopus 로고    scopus 로고
    • The complete genome sequence of the gram-positive bacterium Bacillus subtilis
    • Kunst F., Ogasawara N., Moszer I. et al. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature. 390:1997;249-256.
    • (1997) Nature , vol.390 , pp. 249-256
    • Kunst, F.1    Ogasawara, N.2    Moszer, I.3
  • 30
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • Blattner F.R., Plunkett III G., Bloch C.A. et al. The complete genome sequence of Escherichia coli K-12. Science. 277:1997;1453-1474.
    • (1997) Science , vol.277 , pp. 1453-1474
    • Blattner, F.R.1    Plunkett III, G.2    Bloch, C.A.3
  • 31
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
    • Bult C.J., White O., Olsen G.J. et al. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science. 273:1996;1058-1073.
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1    White, O.2    Olsen, G.J.3
  • 32
    • 15644383855 scopus 로고    scopus 로고
    • Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: Functional analysis and comparative genomics
    • Smith D.R., Doucette-Stamm L.A., Deloughery C. et al. Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics. J. Bacteriol. 179:1997;7135-7155.
    • (1997) J. Bacteriol. , vol.179 , pp. 7135-7155
    • Smith, D.R.1    Doucette-Stamm, L.A.2    Deloughery, C.3
  • 33
    • 0031458333 scopus 로고    scopus 로고
    • The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
    • Klenk H.P., Clayton R.A., Tomb J.F. et al. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature. 390:1997;364-370.
    • (1997) Nature , vol.390 , pp. 364-370
    • Klenk, H.P.1    Clayton, R.A.2    Tomb, J.F.3
  • 34
    • 0002717885 scopus 로고    scopus 로고
    • Goffeau A. et al. Nature. 387(Suppl.):1997;5.
    • (1997) Nature , vol.387 , Issue.SUPPL. , pp. 5
    • Goffeau, A.1
  • 35
    • 0028568176 scopus 로고
    • TopPred II: An improved software for membrane protein structure prediction
    • Claros M.G., von Heijne G. TopPred II: an improved software for membrane protein structure prediction. CABIOS. 10:1994;685-686.
    • (1994) CABIOS , vol.10 , pp. 685-686
    • Claros, M.G.1    Von Heijne, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.