Probability analysis of variational crystallization and its application to gp120, the exterior envelope glycoprotein of type 1 human immunodeficiency virus (HIV-1)

Journal of Biological Chemistry

Volumn 274, Issue 7, 1999, Pages 4115-4123

  Kwong, Peter D ^a   Wyatt, Richard ^b   Desjardins, Elizabeth ^b   Robinson, James ^c   Culp, Jeffrey S ^d   Hellmig, Brian D ^d   Sweet, Raymond W ^d   Sodroski, Joseph ^b   Hendrickson, Wayne A ^a  

^a Columbia University ^*  (United States)

^b DANA FARBER CANCER INSTITUTE   (United States)

^c TULANE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d GLAXOSMITHKLINE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CD4 ANTIGEN; GLYCOPROTEIN GP 120; IMMUNOGLOBULIN F(AB) FRAGMENT; MONOCLONAL ANTIBODY; NEUTRALIZING ANTIBODY; PROTEINASE; VIRUS ENVELOPE PROTEIN;

ANTIGEN BINDING; ARTICLE; CRYSTALLIZATION; HUMAN IMMUNODEFICIENCY VIRUS 1; NONHUMAN; PRIORITY JOURNAL; PROBABILITY; PROTEIN CONFORMATION; PROTEIN GLYCOSYLATION; PROTEIN MODIFICATION;

ANTIBODIES, MONOCLONAL; ANTIGENS, CD4; CRYSTALLIZATION; GLYCOSYLATION; HIV ENVELOPE PROTEIN GP120; HIV-1; HUMANS; PROTEIN CONFORMATION;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; RNA VIRUSES;

EID: 0033548254     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.274.7.4115     Document Type: Article

References (63)

1. Carter, C. W., Jr., and Carter, C. W. (1979) J. Biol. Chem. 254, 12219-12223
2. Jancarik, J., and Kim, S. H. (1991) J. Appl. Crystallogr. 24, 409-411
3. Kelders, H. A., Kalk, K. H., Gros, P., and Hol, W. G. (1987) Protein Eng. 1, 301-303
4. Morris, D. W., Kim, C. Y., and McPherson, A. (1989) BioTechniques 7, 522-527
5. Kendrew, J. C., and Parrish, R. G. (1956) Proc. R. Soc. Lond. A 238, 305-324
6. Hubbard, S. R., Hendrickson, W. A., Lambright, D. G., and Boxer, S. G. (1990) J. Mol. Biol. 213, 215-218
7. Teeter, M. M., and Hendrickson, W. A. (1979) J. Mol. Biol. 127, 219-223
8. Nikolov, D. B., Hu, S. H., Lin, J., Gasch, A., Hoffmann, A., Horikoshi, M., Chua, N. H., Roeder, R. G., and Burley, S. K. (1992) Nature 360, 40-46
9. Porter, R. R. (1973) Science 87, 713-716
10. Brand, C. M., and Skehel, J. J. (1972) Nature 87, 713-716
11. Jordan, S. R., Whitcombe, T. V., Berg, J. M., and Pabo, C. O. (1985) Science 230, 1383-1385
12. Luger, K., Mader, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Nature 389, 251-260
13. Kabsch, W., Mannherz, H. G., Suck, D., Pai, E. F., and Holmes, K. C. (1990) Nature 347, 37-44
14. Kovari, L. C., Momany, C., and Rossmann, M. G. (1995) Structure 3, 1291-1293
15. Ostermeier, C., Iwata, S., Ludwig, B., and Michel, H. (1995) Nat. Struct. Biol. 2, 842-846
16. Lustbader, J. W., Birken, S., Pileggi, N. F., Gawinowicz, M. A., Pollak, S., Cuff, M. E., Yang, W., Hendrickson, W. A., and Canfield, R. E. (1989) Biochemistry 1989, 9239-9243
17. Gallo, R. C., Salahuddin, S. Z., Popovic, M., Shearer, G. M., Kaplan, M., Haynes, B. F., Palker, T. J., Redfield, R., Oleske, J., Safai, B., White, G., Foster, P., and Markham, P. D. (1984) Science 224, 500-503
18. Barre-Sinoussi, F., Chermann, J. C., Rey, F., Nugeyre, M. T., Chamaret, S., Gruest, J., Dauguet, C., Axler-Blin, C., Vezinet-Brun, F., Rouzioux, C., Rosenbaum, W., and Montagnier, L. (1983) Science 220, 868-871
19. Dalgleish, A. G., Beverley, P. C. L., Clapham, P. R., Crawford, D. H., Greaves, M. F., and Weiss, R. A. (1984) Nature 312, 763-767
20. Klatzmann, D., Champagne, E., Charmaret, S., Gruest, J., Guetard, D., Hercend, T., Gluckman, J. C., and Montagnier, L. (1984) Nature 312, 767-768
21. Zhang, L., Huang, Y., He, T., Cao, Y., and Ho, D. D. (1996) Nature 383, 768
22. Feng, F., Broder, C. C., Kennedy, P. E., and Berger, E. A. (1996) Science 272, 872-877
23. Dragic, T., Litwin, V., Allaway, G. P., Martin, S. R., Huang, Y., Nagashima, K. A., Cayanan, C., Maddon, P. J., Koup, R. A., Moore, J. P., and Paxton, W. A. (1996) Nature 381, 667-673
24. Deng, H., Liu, R., Ellmeier, W., Choe, S., Unutmaz, D., Burkhart, M., Di Marzio, P., Marmon, S., Sutton, R. E., Hill, C. M., Davis, C. B., Peiper, S. C., Schall, T. J., Littman, D. R., and Landau, N. R. (1996) Nature 381, 661-666
25. Choe, H., Farzan, M., Sun, Y., Sullivan, N., Rollins, B., Ponath, P. D., Wu, L., Mackay, C. R., LaRosa, G., Newman, W., Gerard, N., Gerard, C., and Sodroski, J. (1996) Cell 85, 1135-1148
26. Alkhatib, G., Combadiere, C., Broder, C. C., Feng, Y., Kennedy, P. E., Murphy, P. M., and Berger, E. A. (1996) Science 272, 1955-1958
27. Ryu, S.-E., Kwong, P. D., Truneh, A., Porter, T. G., Arthos, J., Rosenberg, M., Dai, X., Xuong, N., Axel, R., Sweet, R. W., and Hendrickson, W. A. (1990) Nature 348, 419-426
28. Wang, J. H., Yan, Y. W., Garrett, T. P., Liu, J. H., Rodgers, D. W., Garlick, R. L., Tarr, G. E., Husain, Y., Reinhertz, E. L., and Harrison, S. C. (1990) Nature 348, 411-418
29. Zhang, X., Gaubin, M., Briant, L., Srikantan, V., Murali, R., Saragovi, U., Weiner, D., Devaux, C., Autiero, M., Piatier-Tonneau, D., and Greene, M. I. (1997) Nat. Biotech. 15, 150-154
30. Jarvest, R., Breen, A. L., Edge, C. M., Chaikin, M. A., Jennings, L. J., Truneh, A., Sweet, R. W., and Hertzberg, R. P. (1993) Bioorg. Med. Chem. 3, 2851-2856
31. Chen, S., Chrusciel, R. A., Nakanishi, H., Raktabutr, A., Johnson, M. E., Sato, A., Weiner, D., Hoxie, J., Saragovi, H. U., Greene, M. I., and Kahn, M. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 5872-5876
32. Myers, G., Wain-Hobson, S., Henderson, L., Korber, B., Jeang, K.-T., and Pavlakis, G. (1996) Human Retroviruses and AIDS. A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences, Los Alamos National Laboratory, Los Alamos, NM
33. Leonard, C. K., Spellman, M. W., Riddle, L., Harris, R. J., Thomas, J. N., and Gregory, T. J. (1990) J. Biol. Chem. 265, 10373-10382
34. Starcich, B. R., Hahn, B. H., Shaw, G. M., McNeely, P. D., Modrow, S., Wolf, H., Parks, W. P., Josephs, S. F., Gallo, R. C., and Wong-Staal, F. (1986) Cell 45, 637-648
35. Sattentau, Q. J., Moore, J. P., Vignaux, F., Traincard, F., and Poignard, P. (1993) J. Virol. 64, 7383-7393
36. Thali, M., Moore, J. P., Furman, C., Charles, M., Ho, D. D., Robinson, J., and Sodroski, J. (1993) J. Virol. 67, 3978-3988
37. Wu, H., Myszka, D. G., Tendian, S. W., Brouillette, C. G., Sweet, R. W., Chaiken, I. M., and Hendrickson, W. A. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 15030-15035
38. Ducruix, A., and Giege, R. (1992) Crystallization of Nucleic Acids and Proteins: The Practical Approach Series, Oxford University Press, Oxford
39. Wukovitz, S. W., and Yeates, T. O. (1995) Nature Struct. Biol. 2, 1062-1067
40. Miller, S., Jannin, J., Lesk, A. M., and Chothia, C. (1987) J. Mol. Biol. 196, 641-656
41. Cherbas, L., Moss, R., and Cherbas, P. (1994) Methods Cell Biol. 44, 161-179
42. Moore, J. P., and Sodroski, J. (1996) J. Virol. 70, 1863-1872
43. Thali, M., Olshevsky, U., Furman, C., Gabuzda, D., Posner, M., and Sodroski, J. (1991) J. Virol. 65, 6188-6193
44. Langedijk, J. P., Back, N. K., Kinney-Thomas, E., Bruck, C., Francotte, M., Goudsmit, J., and Meloen, R. H. (1992) Arch Virol. 126, 129-146
45. Truneh, A., Buck, D., Cassatt, D. R., Juszczak, R., Kassis, S., Ryu, S.-E., Healey, D., Sweet, R., and Sattentau, Q. (1991) J. Biol. Chem. 266, 5942-5948
46. Wyatt, R., Desjardin, E., Olshevsky, U., Nixon, C., Binley, J., Olshevsky, V., and Sodroski, J. (1997) J. Virol. 71, 9722-9731
47. Binley, J. M., Wyatt, R., Desjardins, E., Kwong, P. D., Hendrickson, W. A., Moore, J. P., and Sodroski, J. (1998) AIDS Res. Hum. Retroviruses 14, 191-198
48. Lusty, C. J. (1999) J. Appl. Crystallogr., in press
49. Teng, T. Y. (1990) J. Appl. Crystallogr. 23, 387-391
50. Kwong, P. D., and Liu, Y. (1999) J. Appl. Crystallogr., in press
51. Otwinowski, Z., and Minor, W. (1997) Methods Enymol. 276, 307-326
52. Pollard, S. R., Rosa, M. D., Rosa, J. J., and Wiley, D. C. (1992) EMBO J. 11, 585-591
53. Wyatt, R., Sullivan, N., Thali, M., Repke, H., Ho, D., Robinson, J., Posner, M., and Sodroski, J. (1993) J. Virol. 67, 4557-4565
54. Wu, H., Kwong, P. D., and Hendrickson, W. A. (1997) Nature 387, 527-530
55. Lesk, A. M., and Chothia, C. (1988) Nature 335, 188-190
56. Stura, E. A., Nemerow, G. R., and Wilson, I. A. (1992) J. Cryst. Gr. 122, 273-281
57. Chen, G.-Q., Sun, Y., Jin, R., and Gouaux, E. (1998) Protein Sci. 7, 2623-2630
58. Wyatt, R., Moore, J., Accola, M., Desjardin, E., Robinson, J., and Sodroski, J. (1995) J. Virol. 69, 5723-5733
59. Reitter, J. N., Means, R. E., and Desrosiers, R. C. (1998) Nature Med. 4, 679-684
60. Culp, J. S., Johansen, H., Hellmig, B., Beck, J., Matthews, T. J., Delers, A., and Rosenberg, M. (1991) Bio/Technology 9, 173-177
61. Ivey-Hoyle, M., Culp, J. S., Chaikin, M. A., Hellmig, B. D., Matthews, T. J., and Sweet, R. W. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 512-516
62. Wu, L., Gerard, N. P., Wyatt, R., Choe, H., Parlin, C., Ruffing, N., Borsetti, A., Cardoso, A. A., Desjardin, E., Newman, W., Gerard, C., and Sodroski, J. (1996) Nature 384, 179-183
63. Kwong, P. D., Wyatt, R., Robinson, J., Sweet, R. W., Sodroski, J., and Hendrickson, W. A. (1998) Nature 393, 648-659