Role of amino-terminal histone domains in chromatin replication

Molecular and Cellular Biology

Volumn 16, Issue 6, 1996, Pages 2888-2897

  Quintini, Gianluca ^a   Treuner, Kai ^a   Gruss, Claudia ^a   Knippers, Rolf ^a  

^a UNIVERSITY OF KONSTANZ   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; TRYPSIN;

AMINO TERMINAL SEQUENCE; ARTICLE; CHROMOSOME REPLICATION; CHROMOSOME STRUCTURE; CONFORMATION; CONFORMATIONAL TRANSITION; DNA DENATURATION; DNA REPLICATION; DNA TEMPLATE; MINICHROMOSOME; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; SIMIAN VIRUS 40;

SIMIAE; SIMIAN VIRUS; SIMIAN VIRUS 40;

EID: 0029994422     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.16.6.2888     Document Type: Article

References (54)

1. Alexiadis, V., and C. Gruss. Unpublished data.
2. 1a.Allan, J., N. Harborne, D. C. Rau, and H. Gould. 1982. Participation of core histone "tails" in the stabilization of the chromatin solenoid. J. Cell Biol. 93:285-297.
3. Arents, G., R. W. Burlingame, B. W. Wang, W. E. Love, and E. N. Moudrianakis. 1991. The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix. Proc. Natl. Acad. Sci. USA 88:10148-10152.
4. Ausio, J., F. Dong, and K. E. van Holde. 1989. Use of selectively trypsinized nucleosome core particles to analyze the role of the histone "tails" in the stabilization of the nucleosome. J. Mol. Biol. 206:451-463.
5. Bavykin, S. G., S. I. Usachenko, A. O. Zalensky, and A. D. Mirzabekov. 1990. Structure of nucleosomes and organization of internucleosomal DNA in chromatin. J. Mol. Biol. 212:495-511.
6. Beard, P. 1978. Mobility of histones on the chromosome of simian virus 40. Cell 15:955-967.
7. Böhm, L., and C. Crane-Robinson. 1984. Proteases as structural probes for chromatin: the domain structure of histones. Biosci. Rep. 4:365-386.
8. Bonne-Andrea, C., M. L. Wong, and B. M. Alberts. 1990. In vitro replication through nucleosomes without histone displacement. Nature (London) 343:719-726.
9. Clark, D. J., and A. P. Wolffe. 1991. Superhelical stress and nucleosome-mediated repression of 5S RNA gene transcription in vitro. EMBO J. 10:3419-3428.
10. Dong, F., and K. E. van Holde. 1991. Nucleosome positioning is determined by the (H3-H4)2 tetramer. Proc. Natl. Acad. Sci. USA 88:10596-10600.
11. Ebralidse, K. K., S. A. Grachev, and A. D. Mirzabekov. 1988. A highly basic histone H4 domain bound to the sharply bent region of nucleosomal DNA. Nature (London) 331:365-367.
12. Garcia-Ramirez, M., F. Dong, and J. Ausio. 1992. Role of the histone tails in the folding of oligonucleosomes depleted of histone HI. J. Biol. Chem. 267:19587-19595.
13. Germond, J. E., B. E. Hirt, P. Ondet, M. Gross-Bellard, and P. Chambon. 1975. Folding of the DNA double helix in chromatin-like structures from simian virus 40. Proc. Natl. Acad. Sci. USA 72:1843-1847.
14. Glotov, B. O., A. V. Rudin, and E. S. Severin. 1982. Conditions for sliding of nucleosomes along DNA: SV40 minichromosomes. Biochim. Biophys. Acta 696:275-284.
15. Gruss, C., and R. Knippers. 1995. The SV40 minichromosome, p. 101-113. In K. W. Adolph (ed.), Methods in molecular genetics, vol. 7. Academic Press, Orlando, Fla.
16. Gruss, C., and R. Knippers. 1996. Structure of replicating chromatin. Prog. Nucleic Acid Res. Mol. Biol. 52:337-365.
17. Gruss, C., and J. M. Sogo. 1992. Chromatin replication. Bioessays 14:1-8.
18. Gruss, C., J. Wu, T. Koller, and J. M. Sogo. 1993. Disruption of the nucleosomes at the replication fork. EMBO J. 12:4533-4545.
19. Hansen, J. C., and J. Ausio. 1992. Chromatin dynamics and the modulation of genetic activity. Trends Biochem. Sci. 17:187-191.
20. Hayes, J. J., D. J. Clark, and A. P. Wolffe. 1991. Histone contributions to the structure of DNA in the nucleosome. Proc. Natl. Acad. Sci. USA 88:6829-6833.
21. Hirt, B. 1967. Selective extraction of polyoma DNA from infected mouse cell cultures. J. Mol. Biol. 26:365-369.
22. Jackson, V. 1987. Deposition of newly synthesized histones: new histones H2A and H2B do not deposit in the same nucleosome with new histones H3 and H4. Biochemistry 26:2315-2325.
23. Jackson, V. 1988. Deposition of newly synthesized histones: hybrid nucleosomes are not tandemly arranged on daughter DNA strands. Biochemistry 27:2109-2120.
24. Jackson, V. 1990. In vivo studies on the dynamics of histone-DNA interaction: evidence for nucleosome dissolution during replication and transcription and a low level of dissolution independent of both. Biochemistry 29:719-731.
25. Jakobovits, E. B., E. Bratosin, and J. Aloni. 1980. A nucleosome free region in SV40 minichromosomes. Nature (London) 285:263-265.
26. Kaufman, P. D., and M. R. Botchan. 1994. Assembly of nucleosomes: do multiple assembly factors mean multiple mechanisms? Curr. Biol. 4:229-235.
27. Krude, T., C. de Maddalena, and R. Knippers. 1993. A nucleosome assembly factor is a constituent of simian virus 40 minichromosomes. Mol. Cell. Biol. 13:1059-1068.
28. Krude, T., and R. Knippers. 1991. Transfer of nucleosomes from parental to replicated chromatin. Mol. Cell. Biol. 11:6257-6267.
29. Krude, T., and R. Knippers. 1994. Minichromosome replication in vitro: inhibition of re-replication by replicatively assembled nucleosomes. J. Biol. Chem. 269:21021-21029.
30. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227:680-685.
31. Lanford, R. E. 1988. Expression of simian virus 40 T antigen in insect cells using a baculovirus expression vector. Virology 167:72-81.
32. Li, J. J., and T. J. Kelly. 1984. Simian virus 40 DNA replication in vitro. Proc. Natl. Acad. Sci. USA 81:6973-6977.
33. Meersseman, G., S. Pennings, and E. M. Bradbury. 1992. Mobile nucleosomes: a general behavior. EMBO J. 11:2951-2959.
34. Mirzabekov, A. D., V. V. Shick, A. V. Belyavsky, and S. G. Bavykin. 1978. Primary organization of nucleosome core particles in chromatin: sequence of histone arrangement along DNA. Proc. Natl. Acad. Sci. USA 75:4184-4189.
35. Peck, L. J., and J. C. Wang. 1983. Energetics of B- to Z transition in DNA. Proc. Natl. Acad. Sci. USA 80:6206-6210.
36. Pruss, D., J. J. Hayes, and A. P. Wolffe. 1995. Nucleosomal anatomy - where are the histones. Bioessays 17:161-170.
37. Ramsperger, U., and H. Stahl. 1995. Unwinding of chromatin by the SV40 large T antigen DNA helicase. EMBO J. 14:3215-3225.
38. Randall, S. K., and T. J. Kelly. 1992. The fate of parental nucleosomes during SV40 DNA replication. J. Biol. Chem. 267:14259-14265.
39. Saragosti, S., G. Moyne, and M. Yaniv. 1980. Absence of nucleosomes in a fraction of SV40 chromatin between the origin of replication and the region coding for the late leader RNA. Cell 20:65-73.
40. Simanis, V., and D. P. Lane. 1985. An immunoaffinity purification procedure for SV40 large T antigen. Virology 144:88-100.
41. Smith, S., and B. Stillman. 1989. Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro. Cell 58:15-25.
42. Smith, S., and B. Stillman. 1991. Stepwise assembly of chromatin during DNA replication. EMBO J. 10:971-9811.
43. Snapka, R. 1986. Topoisomerase inhibitors can selectively interfere with different stages of simian virus 40 DNA replication. Mol. Cell. Biol. 6:4221-4227.
44. Sogo, J. M., H. Stahl, T. Koller, and R. Knippers. 1986. Structure of replicating simian virus 40 minichromosomes. J. Mol. Biol. 189:189-204.
45. Stillman, B. W., and V. Gluzman. 1985. Replication and supercoiling of simian virus 40 DNA in cell extracts from human cells. Mol. Cell. Biol. 5:2051-2060.
46. Studitsky, V. M., D. J. Clark, and G. Felsenfeld. 1994. A histone octamer can step around a transcribing polymerase without leaving the template. Cell 76:371-382.
47. Sugasawa, K., Y. Ishimi, T. Eki, J. Hurwitz, A. Kikuchi, and F. Hanaoka. 1992. Nonconservative segregation of parental nucleosomes during simian virus 40 chromosome replication in vitro. Proc. Nail. Acad. Sci. USA 89:1055-1059.
48. Sundin, O., and A. Varshavsky. 1981. Arrest of segregation leads to accumulation of highly intertwined catenated dimers: dissection of the final stages of SV40 DNA replication. Cell 25:659-669.
49. Van Holde, K. E. 1988. Chromatin. Springer-Verlag, New York.
50. Vollenweider, H., J. Sogo, and T. Koller. 1975. A routine method for protein-free spreading of double- and single-stranded DNA molecules. Proc. Natl. Acad. Sci. USA 72:83-87.
51. Waga, S., and B. Stillman. 1994. Anatomy of a DNA replication fork revealed by reconstitution of SV40 DNA replication in vitro. Nature (London) 369:207-212.
52. Wessel, R., J. Schweizer, and H. Stahl. 1992. Simian virus 40 T-antigen DNA helicase is a hexamer which forms a binary complex during bidirectional unwinding from the viral origin of DNA replication. J. Virol. 66:804-815.
53. Wray, W., T. Boulikas, V. P. Wray, and R. Hancock. 1981. Silver staining of proteins in polyacrylamide gels. Anal. Biochem. 118:197-203.
54. Yamaguchi, M., and M. L. DePamphilis. 1986. DNA binding site for a factor(s) required to initiate simian virus 40 DNA replication. Proc. Natl. Acad. Sci. USA 83:1646-1650.