A 570-kb DNA sequence of the escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map

DNA Research

Volumn 3, Issue 6, 1996, Pages 363-377

  Aiba, Hiroji ^a   Baba, Tomoya ^b   Hayashi, Kouji ^c   Inada, Toshifumi ^a   Isono, Katumi ^b   Itoh, Takeshi ^d   Kasai, Hiroaki ^b   Kashimoto, Kaoru ^e   Kimura, Shigenobu ^f   Kitakawa, Madoka ^b   Kitagawa, Masanari ^d   Making, Kozo ^f   Miki, Takeyoshi ^e   Mizobuchi, Kiyoshi ^g   Mori, Hirotada ^d   Mori, Tomoko ^c   Motomura, Kouji ^g   Nakade, Shinsuke ^d   Nakamura, Yoshikazu ^h   Nashimoto, Hiroko ⁱ   Nishio, Yoshitaka ^g   Oshima, Taku ^h   Saito, Noriko ⁱ   Sampei, Gen Ichi ^g   Seki, Yasushi ^g   Sivasundaram, Suharnan ^d   Tagami, Hideaki ^a   Takeda, Jun Ichi ^d   Takemoto, Keiko ^j   Takeuchi, Yasushi ^c   Wada, Chieko ^j   Yamamoto, Yoshihiro ^k   Horiuchi, Takashi ^c   more..

^a NAGOYA UNIVERSITY   (Japan)

^b KOBE UNIVERSITY   (Japan)

^c NATIONAL INSTITUTE FOR BASIC BIOLOGY   (Japan)

^d NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^e KYUSHU UNIVERSITY   (Japan)

^f OSAKA UNIVERSITY   (Japan)

^g UNIVERSITY OF ELECTRO COMMUNICATIONS   (Japan)

^h UNIVERSITY OF TOKYO   (Japan)

ⁱ TEIKYO UNIVERSITY   (Japan)

^j KYOTO UNIVERSITY   (Japan)

^k HYOGO COLLEGE OF MEDICINE   (Japan)

more..

Author keywords

Escherichia coli K12; Genome sequence; ORF analysis; Replication termination region

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIOPHAGE; CHROMOSOME MAP; DNA SEQUENCE; ESCHERICHIA COLI; GENETICS; MULTIGENE FAMILY; OPEN READING FRAME; OPERON; PLASMID; REPLICON; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

CHROMOSOME MAPPING; ESCHERICHIA COLI; GENES, BACTERIAL; MULTIGENE FAMILY; OPEN READING FRAMES; OPERON; PLASMIDS; REPLICON; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; SIPHOVIRIDAE;

EID: 0030608406     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/3.6.363     Document Type: Article

References (21)

1. Fleischmann, R. D., Adams, M. D., White, O. et al. 1995, Whole-genome random sequencing and assembly of Haemophilus influenzae Rd, Science, 269, 496-512.
2. Fraser, C. M., Gocayne, J. D., White, O. et al. 1995, The minimal gene complement of Mycoplasme, genitalium, Science, 270, 397-403.
3. Bult, C. J., White, O., Olsen, G. J. et al. 1996, Complete genome sequence of the Methanogenic Archaeon, Methanococcus jannaschii, Science, 273, 1058-1073.
4. Kaneko, T., Sato, S., Kotani, H. et al. 1996, Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions, DNA Res., 3, 109-136.
5. Williams, N. 1996, Yeast genome sequence ferments new research, Science, 272, 481.
6. Neidhardt, F. C. et al. 1996, Escherichia coli and Salmonella. American Society for Microbiology, Washington D.C.
7. Yura, T., Mori, H., Nagai, H. et al. 1992, Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region, Nucleic Acids Res., 20, 3305-3308.
8. Fujita, N., Mori, H., Yura, T., and Ishihama, A. 1994, Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region, Nucleic Acids Res., 22, 1637-1639.
9. Oshima, T., Aiba, H., Baba, T. et al. 1996, A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map, DNA Res., 3, 137-155.
10. Daniels, D. L., Plunkett, G. III, Burland, V., and Blattner, F. R. 1992, Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes, Science, 257, 771-778.
11. Plunkett, G. III, Burland, V., Daniels, D. L., and Blattner, F. R. 1993, Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes, Nucleic Acids Res., 21, 3391-3398.
12. Burland, V., Plunkett, G. III, Daniels, D. L., and Blattner, F. R. 1993, DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication, Genomics., 16, 551-561.
13. Blattner, F. R., Burland, V., Plunkett, G. III, Sofia, H. J., and Daniels, D. L. 1993, Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes, Nucleic Acids Res., 21, 5408-5417.
14. Sofia, H. J., Burland, V., Daniels, D. L., Plunkett, G. III, and Blattner, F. R. 1994, Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes, Nucleic Acids Res., 22, 2576-2586.
15. Burland, V., Plunkett, G. III, Sofia, H. J., Daniels, D. L., and Blattner., F. R. 1995, Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes, Nucleic Acids Res., 23, 2105-2119.
16. Kohara, Y., Akiyama, K., and Isono, K. 1987, The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library, Cell, 50, 495-508.
17. Bachmann, B. J. 1990, Linkage map of Escherichia coli K-12, edition 8, Microbiol Rev., 54, 130-197.
18. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990, Basic local alignment search tool, J. Mol Biol., 215, 403-410.
19. Borodovsky, M. and McIninch, J. 1993, GENEMARK: Parallel gene recognition for both DNA strands, Comput. Chem., 17, 123-133.
20. Barrick, D., Villanueba, K., Childs, J. et al. 1994, Quantitative analysis of ribosome binding sites in E. coli, Nucleic Acids Res., 22, 1287-1295
21. Henson, J. M. and Kuempel, P. L. 1985, Deletion of the terminus region (340 kilobase pairs of DNA) from the chromosome of Escherichia coli, Proc. Natl. Acad. Sci. USA, 82, 3766-3770.