메뉴 건너뛰기




Volumn 259, Issue 4, 1996, Pages 696-703

Sequence variation as a strategy for crystallizing RNA motifs

Author keywords

Hairpin; Oligonucleotide synthesis; Pseudoknot; RNA structure; X ray crystallography

Indexed keywords

ARTICLE; CRYSTAL STRUCTURE; CRYSTALLIZATION; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RNA SEQUENCE; RNA STRUCTURE; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

EID: 0030596508     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0351     Document Type: Article
Times cited : (16)

References (26)
  • 1
    • 0024284650 scopus 로고
    • Recognition of a DNA operator by the repressor of phage 434: A view at high resolution
    • Aggarwal, A., Rodgers, D., Drottar, M., Ptashne, M. & Harrison, S. (1988). Recognition of a DNA operator by the repressor of phage 434: a view at high resolution. Science, 242, 899-907.
    • (1988) Science , vol.242 , pp. 899-907
    • Aggarwal, A.1    Rodgers, D.2    Drottar, M.3    Ptashne, M.4    Harrison, S.5
  • 2
    • 0029082529 scopus 로고
    • Structure of the P1 helix from group I self-splicing introns
    • Allain, F. & Varani, G. (1995). Structure of the P1 helix from group I self-splicing introns. J. Mol. Biol. 250, 333-353.
    • (1995) J. Mol. Biol. , vol.250 , pp. 333-353
    • Allain, F.1    Varani, G.2
  • 3
    • 0029805728 scopus 로고    scopus 로고
    • HPLC purification of RNA for crystallography and NMR
    • Anderson, A., Scaringe, S., Earp, B. & Frederick, C. (1996). HPLC purification of RNA for crystallography and NMR. RNA, 2, 110-117.
    • (1996) RNA , vol.2 , pp. 110-117
    • Anderson, A.1    Scaringe, S.2    Earp, B.3    Frederick, C.4
  • 4
    • 0026593806 scopus 로고
    • Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
    • Antao, V. & Tinoco, I. (1991). Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops. Nucl. Acids Res. 20, 819-824.
    • (1991) Nucl. Acids Res. , vol.20 , pp. 819-824
    • Antao, V.1    Tinoco, I.2
  • 5
    • 0028902990 scopus 로고
    • Structure of an RNA double helix including uracil-uracil base-pairs in an internal loop
    • Baeyens, K., De Bondt, H. & Holbrook, S. (1995). Structure of an RNA double helix including uracil-uracil base-pairs in an internal loop. Nature Struct. Biol. 2, 56-62.
    • (1995) Nature Struct. Biol. , vol.2 , pp. 56-62
    • Baeyens, K.1    De Bondt, H.2    Holbrook, S.3
  • 7
    • 0028206986 scopus 로고
    • Structure of a mispaired RNA double helix at 1.6 A resolution and implications for the prediction of RNA secondary structure
    • Cruse, W. B. T., Saludjian, P., Biala, E., Strazewski, P., Prange, T. & Kennard, O. (1994). Structure of a mispaired RNA double helix at 1.6 A resolution and implications for the prediction of RNA secondary structure. Proc. Natl Acad. Sci. USA, 91, 4160-4164.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 4160-4164
    • Cruse, W.B.T.1    Saludjian, P.2    Biala, E.3    Strazewski, P.4    Prange, T.5    Kennard, O.6
  • 9
    • 0027237520 scopus 로고
    • Crystallization of ribozymes and small RNA motifs using a novel sparse matrix approach
    • Doudna, J., Grosshans, C., Gooding, A. & Kundrot, C. (1993). Crystallization of ribozymes and small RNA motifs using a novel sparse matrix approach. Proc. Natl Acad. Sci. USA, 90, 7829-7833.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 7829-7833
    • Doudna, J.1    Grosshans, C.2    Gooding, A.3    Kundrot, C.4
  • 11
    • 0026000848 scopus 로고
    • Crystal structure of an RNA double-helix incorporating a track of non-Watson-Crick base-pairs
    • Holbrook, S., Cheong, C., Tinoco, I. & Kim, S.-H. (1991). Crystal structure of an RNA double-helix incorporating a track of non-Watson-Crick base-pairs. Nature, 353, 579-581.
    • (1991) Nature , vol.353 , pp. 579-581
    • Holbrook, S.1    Cheong, C.2    Tinoco, I.3    Kim, S.-H.4
  • 12
    • 0022339965 scopus 로고
    • Systematic variation in DNA length yields highly ordered repressor/operator cocrystals
    • Jordan, S., Whitcombe, T., Berg, J. & Pabo, C. (1988). Systematic variation in DNA length yields highly ordered repressor/operator cocrystals. Science, 230, 1383-1385.
    • (1988) Science , vol.230 , pp. 1383-1385
    • Jordan, S.1    Whitcombe, T.2    Berg, J.3    Pabo, C.4
  • 13
    • 0029111762 scopus 로고
    • Kinking of DNA and RNA by base bulges
    • Lilley D. (1995). Kinking of DNA and RNA by base bulges. Proc. Natl Acad. Sci. USA, 92, 7140-7142.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 7140-7142
    • Lilley, D.1
  • 15
    • 0028004607 scopus 로고
    • Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
    • Oubridge, C., Ito, N., Evans, P., Teo, C. & Nagai, K. (1995). Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature, 372, 432-438.
    • (1995) Nature , vol.372 , pp. 432-438
    • Oubridge, C.1    Ito, N.2    Evans, P.3    Teo, C.4    Nagai, K.5
  • 16
    • 0028063567 scopus 로고
    • Three-dimensional structure of a hammerhead ribozyme
    • Pley, H., Flaherty K. & McKay D. (1994). Three-dimensional structure of a hammerhead ribozyme. Nature, 372, 68-74.
    • (1994) Nature , vol.372 , pp. 68-74
    • Pley, H.1    Flaherty, K.2    McKay, D.3
  • 17
    • 0025108861 scopus 로고
    • Conformation of an RNA pseudoknot
    • Puglisi, J., Wyatt, J. & Tinoco, I. (1990). Conformation of an RNA pseudoknot. J. Mol. Biol. 214, 437-453.
    • (1990) J. Mol. Biol. , vol.214 , pp. 437-453
    • Puglisi, J.1    Wyatt, J.2    Tinoco, I.3
  • 20
    • 0029044469 scopus 로고
    • Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Delgarno sequence
    • Schindelin, H., Zhang, M., Bald, R., Furste, J., Erdmann, V. & Heinemann, U. (1995). Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Delgarno sequence. J. Mol. Biol. 249, 595-603.
    • (1995) J. Mol. Biol. , vol.249 , pp. 595-603
    • Schindelin, H.1    Zhang, M.2    Bald, R.3    Furste, J.4    Erdmann, V.5    Heinemann, U.6
  • 21
    • 0029115376 scopus 로고
    • Rapid crystallization of chemically synthesized hammerhead RNAs using a double screening procedure
    • Scott, W., Finch, J., Grenfell, R., Fogg, J., Smith, T., Gait, M. & Klug, A. (1995a). Rapid crystallization of chemically synthesized hammerhead RNAs using a double screening procedure. J. Mol. Biol. 250, 327-332.
    • (1995) J. Mol. Biol. , vol.250 , pp. 327-332
    • Scott, W.1    Finch, J.2    Grenfell, R.3    Fogg, J.4    Smith, T.5    Gait, M.6    Klug, A.7
  • 22
    • 0029073091 scopus 로고
    • The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
    • Scott, W., Finch, J. & Klug, A. (1995b). The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage. Cell, 81, 991-1002.
    • (1995) Cell , vol.81 , pp. 991-1002
    • Scott, W.1    Finch, J.2    Klug, A.3
  • 23
    • 0027960331 scopus 로고
    • Crystal structure of an RNA bacteriophage coat protein-operator complex
    • Valegard, K., Murray, J., Stockley P., Stonehouse, N. & Liljas, L. (1994). Crystal structure of an RNA bacteriophage coat protein-operator complex. Nature, 371, 623-626.
    • (1994) Nature , vol.371 , pp. 623-626
    • Valegard, K.1    Murray, J.2    Stockley, P.3    Stonehouse, N.4    Liljas, L.5
  • 25
    • 0025113514 scopus 로고
    • RNA pseudoknots: Stability and loop size requirements
    • Wyatt, J., Puglisi, J. & Tinoco, I. (1990). RNA pseudoknots: stability and loop size requirements. J. Mol. Biol. 214, 455-470.
    • (1990) J. Mol. Biol. , vol.214 , pp. 455-470
    • Wyatt, J.1    Puglisi, J.2    Tinoco, I.3
  • 26
    • 0028969693 scopus 로고
    • Bulge-induced bends in RNA: Quantification by transient electric birefringence
    • Zacharias, M. & Hagerman, P. (1995). Bulge-induced bends in RNA: quantification by transient electric birefringence. J. Mol. Biol. 247, 486-500.
    • (1995) J. Mol. Biol. , vol.247 , pp. 486-500
    • Zacharias, M.1    Hagerman, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.