SWI/SNF complex: Dissection of a chromatin remodeling cycle

Cold Spring Harbor Symposia on Quantitative Biology

Volumn 63, Issue , 1998, Pages 545-552

  Peterson, C L ^a  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; DNA; HISTONE; DISTAMYCIN A DERIVATIVE; DNA FRAGMENT; RNA POLYMERASE II; SWI/SNF RELATED MATRIX ASSOCIATED ACTIN DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1;

AMINO TERMINAL SEQUENCE; CHROMATIN STRUCTURE; CONFERENCE PAPER; GENE LOCUS; HYDROLYSIS; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; REACTION ANALYSIS; REGULATORY MECHANISM; REPORTER GENE; TRANSCRIPTION REGULATION; YEAST; CELL MOTILITY; CHROMATIN ASSEMBLY AND DISASSEMBLY; CONCEPTUAL FRAMEWORK; CROSS LINKING; DNA SEQUENCE; ELECTRON MICROSCOPY; GENE; GENE INTERACTION; HISTONE ACETYLATION; HO GENE; PHOTOAFFINITY LABELING; PROTEIN INTERACTION; PROTEIN PROCESSING; RNA 5S GENE; SUC2 GENE;

EID: 0032466793     PISSN: 00917451     EISSN: None     Source Type: Book Series    
DOI: 10.1101/sqb.1998.63.545     Document Type: Conference Paper

References (37)

1. Arents G. and Moudrianakis E.N. 1993 Topography of the histone octamer surface: Repeating structural motifs utilized in the docking of nucleosomal DNA. Proc. Natl. Acad. Sci. 90: 10489.
2. Bazett-Jones D.P., Côté J., Landel C.C., Peterson C.L., and Workman J.L. 1998. SWI/SNF complex creates loop domains in DNA and polynucleosome arrays and can disrupt DNA:histone contacts within these domains. Mol. Cell. Biol. (in press).
3. Bhattacharyya A., Murchie A.I.H., von Kitzing E., Diekmann S., Kemper B., and Lilley D.M.J. 1991. A model for the interaction of DNA junctions and resolving enzymes. J. Mol. Biol. 221: 1191.
4. Burns L. and Peterson C.L. 1997. Yeast SWI/SNF complex facilitates the binding of a transcriptional activator to nucleosomal sites in vivo. Mol. Cell. Biol. 17: 4811.
5. Cairns B.R., Lorch Y., Li Y., Zhang M., Lacomis L., Erdjument-Bromage H., Tempst P., Du J., Laurent B., and Kornberg R.D. 1996. RSC, an essential, abundant chromatin-remodeling complex. Cell 87: 1249.
6. Côté J., Peterson C.L., and Workman J.L. 1998. Perturbation of nucleosome core structure by the SWI/SNF complex persists following its detachment, enhancing subsequent transcription factor binding. Proc. Natl. Acad. Sci. 95: 4947.
7. Côté J., Quinn J., Workman J., and Peterson C.L. 1994. Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF protein complex. Science 265: 53.
8. Frankel S. and Mooseker M.S. 1996 The actin-related proteins. Curr. Opin. Cell Biol. 8: 30.
9. Fryer C.J. and Archer T.K. 1998. Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex. Nature 393: 88.
10. Gavin I.M. and Simpson R.T. 1997. Interplay of yeast global transcriptional regulators Ssn6p-Tup1p and Swi-Snf and their effect on chromatin structure. EMBO J. 16: 6263.
11. Grant P.A., Duggan L., Côté J., Roberts S.M., Brownell J.E., Candau R., Ohba R., Owen- Hughes T., Allis C.D., Winston F., Berger S.L., and Workman J.L. 1997. Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: Characterization of an Ada complex and the SAGA (Spt/Ada) complex. Genes Dev. 11: 1640.
12. Hansen J.C. 1998. The core histone amino termini: Combinatorial interaction domains link chromatin structure with function. Chemtracts-Biochem. Mol. Biol.. 10: 56.
13. Hecht A., Laroche T., Strahl-Bolsinger S., Gasser S.M., and Grunstein M. 1995. Histone H3 and H4 N-termini interact with SIRS and SIR4 proteins: A molecular model for the formation of heterochromatin in yeast. Cell 80: 583.
14. Holmes K.C., Sander C., and Valencia A. 1993. A new ATP-binding fold in actin, hexokinase and Hsc70. Trends Cell Biol. 3: 53.
15. Ito T., Bulger M., Pazin M.J., Kobayashi R., and Kadonaga J.T. 1997. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell 90: 145.
16. Laurent B.C., Treich I., and Carlson M. 1993. The yeast SNF2/SWI2 protein has DNA-stimulated ATPase activity required for transcriptional activation. Genes Dev. 7: 583.
17. Logie C. and Peterson C.L. 1997. Catalytic nucleosome remodeling by the yeast SWI/SNF complex on nucleosome arrays. EMBO J. 16: 6772.
18. Luger K., Mader A.W., Richmond R.K., Sargent D.F., and Richmond T.J. 1997. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389: 251.
19. Owen-Hughes T.A., Utley R.T., Côté J., Peterson C.L., and Workman J.L. 1996. Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex. Science 273: 513.
20. Pazin M.J. and Kadonaga J.T. 1997. SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions? Cell 88: 737.
21. Peterson C.L. and Tamkun J.W. 1995. The SWI/SNF complex: A chromatin remodeling machine? Trends Biochem. Sci. 20: 143.
22. Peterson C.L., Zhao Y., and Chait B. 1998. Subunits of the yeast SWI/SNF complex are members of the actin related protein (ARP) family. J. Biol. Chem. 273: 23641.
23. Poch O. and Winsor B. 1997. Who's who among the Saccharomyces cerevisiae actin-related proteins? A classification and nomenclature proposal for a large family. Yeast 13: 1053.
24. Pohler J.R.G., Duckett D.R., and Lilley D.M.J. 1994. Structure of four-way DNA junctions containing a nick in one strand. J. Mol. Biol. 238: 62.
25. Polach K.J. and Widom J. 1995. Mechanism of protein access to specific DNA sequences in chromatin: A dynamic model for gene regulation. J. Mol. Biol. 254: 130.
26. Pollard K.J. and Peterson C.L. 1997. Role for ADA/GCN5 products in antagonizing chromatin-mediated transcriptional repression. Mol. Cell. Biol. 17: 6212.
27. _. 1998. Chromatin remodeling: A marriage between two families? BioEssays 20: 771.
28. Pruss D., Bartholomew B., Persinger J., Hayes J., Arents G., Moudrianakis E.N., and Wolffe A.P. 1996. An asymmetric model for the nucleosome: A binding site for linker histones inside the DNA gyres. Science 274: 614.
29. Quinn J., Fyrberg A., Ganster R.W., Schmidt M.C., and Peterson C.L. 1996. DNA-binding properties of the yeast SWI/SNF complex. Nature 379: 844.
30. Studitsky V.M., Clark D.J., and Felsenfeld G. 1994 A histone octamer can step around a transcribing polymerase without leaving the template. Cell 76: 371.
31. Studitsky V.M., Kassavetis G.A., Geiduschek E.P., and Felsenfeld G. 1997. Mechanism of transcription through the nucleosome by eukaryotic RNA polymerase. Science 278: 1960.
32. Travers A.A. 1992. The reprogramming of transcriptional competence. Cell 69: 573.
33. Tsukiyama T. and Wu C. 1995. Purification and properties of an ATP-dependent nucleosome remodeling factor. Cell 83: 1011.
34. Utley R.T., Côté J., Owen-Hughes T., and Workman J.L. 1997. SWI/SNF stimulates the formation of disparate activator-nucleosome complexes but is partially redundant with cooperative binding. J. Biol. Chem. 272: 12642.
35. Wilson C.J., Chao D.M., Imbalzano A.N., Schnitzler G.R., Kingston R.E., and Young R.A. 1996. RNA polymerase II holoenzyme contains SWI/SNF regulators involved in chro matin remodeling. Cell 84: 235.
36. Wu L. and Winston F. 1997. Evidence that Snf-Swi controls chromatin structure over both the TATA and UAS regions of the SUC2 promoter in Saccharomyces cerevisiae. Nucleic Acids Res. 25: 4230.
37. Yoshinaga S.K., Peterson C.L., Herskowitz I., and Yamamoto K. 1992. Roles of SWI1, SWI2, and SWI3 proteins for transcriptional enhancement by steroid receptors. Science 258: 1598.