메뉴 건너뛰기




Volumn 267, Issue 5, 1997, Pages 1149-1156

Crystal structure of an alternating octamer r(GUAUGUA)dC with adjacent G·U wobble pairs

Author keywords

Alternating octamer; G U wobble pairs; Hydration of G U pairs; Tandem or adjacent wobbles; X ray crystallography

Indexed keywords

DOUBLE STRANDED RNA; GUANINE; OLIGONUCLEOTIDE; POLYMER; URACIL;

EID: 0031576991     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.0936     Document Type: Article
Times cited : (49)

References (37)
  • 1
    • 0024472699 scopus 로고
    • The conserved U·G pair in the 5′ splice site duplex of a group I intron is required in the first but not the second step of self-palicing
    • Barfod E. T., Cech T. R. The conserved U·G pair in the 5′ splice site duplex of a group I intron is required in the first but not the second step of self-palicing. Mol. Cell. Biol. 9:1989;3657-3666.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 3657-3666
    • Barfod, E.T.1    Cech, T.R.2
  • 2
    • 0028146491 scopus 로고
    • Crystal structure of domain A of Thermus flavus 5S rRNA and the contribution of water molecules to its structure
    • Betzel C., Lorenz S., Fiirste J. P., Bald R., Zhang M., Schneider T. R., Wilson K. S., Erdmann V. A. Crystal structure of domain A of Thermus flavus 5S rRNA and the contribution of water molecules to its structure. FEBS Letters. 351:1994;159-164.
    • (1994) FEBS Letters , vol.351 , pp. 159-164
    • Betzel, C.1    Lorenz, S.2    Fiirste, J.P.3    Bald, R.4    Zhang, M.5    Schneider, T.R.6    Wilson, K.S.7    Erdmann, V.A.8
  • 3
    • 0025648066 scopus 로고
    • Local variability and base sequence effects in DNA crystal structures
    • Bhattacharyya D., Bansal M. Local variability and base sequence effects in DNA crystal structures. J. Biomol. Struct. Dynam. 8:1990;539-572.
    • (1990) J. Biomol. Struct. Dynam. , vol.8 , pp. 539-572
    • Bhattacharyya, D.1    Bansal, M.2
  • 6
    • 0020385863 scopus 로고
    • Mechanisms of sequence-dependent stacking of bases in B -DNA
    • Calladine C. R. Mechanisms of sequence-dependent stacking of bases in B -DNA. J. Mol. Biol. 161:1982;343-352.
    • (1982) J. Mol. Biol. , vol.161 , pp. 343-352
    • Calladine, C.R.1
  • 7
    • 0021770861 scopus 로고
    • A base-centred explanation of the B -to- A transition in DNA
    • Calladine C. R., Drew H. R. A base-centred explanation of the B -to- A transition in DNA. J. Mol. Biol. 178:1984;773-782.
    • (1984) J. Mol. Biol. , vol.178 , pp. 773-782
    • Calladine, C.R.1    Drew, H.R.2
  • 8
    • 0023364038 scopus 로고
    • The chemistry of self-splicing RNA and RNA enzymes
    • Cech T. R. The chemistry of self-splicing RNA and RNA enzymes. Science. 236:1987;1532-1539.
    • (1987) Science , vol.236 , pp. 1532-1539
    • Cech, T.R.1
  • 9
    • 0013936167 scopus 로고
    • Codon-anticodon pairing: The wobble hypothesis
    • Crick F. H. C. Codon-anticodon pairing: the wobble hypothesis. J. Mol. Biol. 19:1966;548-555.
    • (1966) J. Mol. Biol. , vol.19 , pp. 548-555
    • Crick, F.H.C.1
  • 10
    • 0028206986 scopus 로고
    • Structure of a mispaired RNA double helix at 1.6-Å resolution and implications for the prediction of RNA secondary structures
    • Cruse W. B. T., Saludjian P., Biala E., Strazewski P., Prange T., Kennard O. Structure of a mispaired RNA double helix at 1.6-Å resolution and implications for the prediction of RNA secondary structures. Proc. Natl Acad. Sci., USA. 91:1994;4160-4164.
    • (1994) Proc. Natl Acad. Sci., USA , vol.91 , pp. 4160-4164
    • Cruse, W.B.T.1    Saludjian, P.2    Biala, E.3    Strazewski, P.4    Prange, T.5    Kennard, O.6
  • 11
    • 0020619672 scopus 로고
    • Base sequence and helix structure variation in B and A DNA
    • Dickerson R. E. Base sequence and helix structure variation in B and A DNA. J. Mol. Biol. 166:1983;419-441.
    • (1983) J. Mol. Biol. , vol.166 , pp. 419-441
    • Dickerson, R.E.1
  • 14
    • 0023040892 scopus 로고
    • Free energy contributions of G·U and other terminal mismatches to helix stability
    • Freier S. M., Kierzek R., Caruthers M. H., Neilson T., Turner D. H. Free energy contributions of G·U and other terminal mismatches to helix stability. Biochemistry. 25:1986a;3209-3213.
    • (1986) Biochemistry , vol.25 , pp. 3209-3213
    • Freier, S.M.1    Kierzek, R.2    Caruthers, M.H.3    Neilson, T.4    Turner, D.H.5
  • 16
    • 0029382234 scopus 로고
    • G·U base pairing motifs in ribosomal RNA
    • Gautheret D., Konings D., Gutell R. G·U base pairing motifs in ribosomal RNA. RNA. 1:1995;807-814.
    • (1995) RNA , vol.1 , pp. 807-814
    • Gautheret, D.1    Konings, D.2    Gutell, R.3
  • 17
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
    • Gutell R. R., Larsen N., Woese C. R. Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol. Rev. 58:1994;10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 18
    • 0026335264 scopus 로고
    • Nearest neighbor parameters for G·U mismatches: GU/UG is destabilizing in the contexts CGUG/GUGC, UGUA/AUGU, and AGUU/UUGA but stabilizing in GGUC/CUGG
    • He L., Kierzek R., SantaLucia J. J., Walter A. E., Turner D. H. Nearest neighbor parameters for G·U mismatches: GU/UG is destabilizing in the contexts CGUG/GUGC, UGUA/AUGU, and AGUU/UUGA but stabilizing in GGUC/CUGG. Biochemistry. 30:1991;11124-11132.
    • (1991) Biochemistry , vol.30 , pp. 11124-11132
    • He, L.1    Kierzek, R.2    Santalucia, J.J.3    Walter, A.E.4    Turner, D.H.5
  • 19
    • 0026000848 scopus 로고
    • Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs
    • Holbrook S. R., Cheong C., Tinoco I., Jr, Kim S. H. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs. Nature. 353:1991;5799-5581.
    • (1991) Nature , vol.353 , pp. 5799-5581
    • Holbrook, S.R.1    Cheong, C.2    Tinoco, I.3    Jr4    Kim, S.H.5
  • 20
    • 0024284965 scopus 로고
    • A simple structural feature is a major determinant of the identity of a transfer RNA
    • Hou Y. M., Schimmel P. A simple structural feature is a major determinant of the identity of a transfer RNA. Nature. 333:1988;140-145.
    • (1988) Nature , vol.333 , pp. 140-145
    • Hou, Y.M.1    Schimmel, P.2
  • 22
    • 0022429756 scopus 로고
    • G·T base-pairs in a DNA helix: The crystal structure of d(G-G-G-G-T-C-C-C)
    • Kneale G., Brown T., Kennard O. G·T base-pairs in a DNA helix: the crystal structure of d(G-G-G-G-T-C-C-C). J. Mol. Biol. 186:1985;805-814.
    • (1985) J. Mol. Biol. , vol.186 , pp. 805-814
    • Kneale, G.1    Brown, T.2    Kennard, O.3
  • 23
    • 0024279871 scopus 로고
    • Changing the identity of a tRNA by introducing a G-U wobble pair near the 3′ acceptor end
    • McClain W. H., Floss K. Changing the identity of a tRNA by introducing a G-U wobble pair near the 3′ acceptor end. Science. 240:1988a;793-796.
    • (1988) Science , vol.240 , pp. 793-796
    • McClain, W.H.1    Floss, K.2
  • 25
  • 26
    • 0018086876 scopus 로고
    • Stacking of Crick wobble pair and Watson-Crick pair: Stability rules of G-U pairs at ends of helical stems in tRNAs and the relation to codon-anticodon wobble interaction
    • Mizuno H., Sundaralingam M. Stacking of Crick wobble pair and Watson-Crick pair: stability rules of G-U pairs at ends of helical stems in tRNAs and the relation to codon-anticodon wobble interaction. Nucl. Acids Res. 5:1978;4451-4461.
    • (1978) Nucl. Acids Res. , vol.5 , pp. 4451-4461
    • Mizuno, H.1    Sundaralingam, M.2
  • 27
    • 0024278234 scopus 로고
    • Structure of the mismatched duplex d(GGGTGCCC) and one of its Watson-Crick analogues d(GGGCGCCC)
    • Rabinovich D., Haran T., Eisenstein M., Shakked Z. Structure of the mismatched duplex d(GGGTGCCC) and one of its Watson-Crick analogues d(GGGCGCCC). J. Mol. Biol. 200:1988;151-161.
    • (1988) J. Mol. Biol. , vol.200 , pp. 151-161
    • Rabinovich, D.1    Haran, T.2    Eisenstein, M.3    Shakked, Z.4
  • 28
    • 0025975057 scopus 로고
    • Pre-mRNA splicing in yeast
    • Ruby S. W., Abelson J. Pre-mRNA splicing in yeast. Trends Genet. 7:1991;79-85.
    • (1991) Trends Genet. , vol.7 , pp. 79-85
    • Ruby, S.W.1    Abelson, J.2
  • 30
    • 0029100233 scopus 로고
    • Predicting thermodynamic properties of RNA
    • Serra M. J., Turner D. H. Predicting thermodynamic properties of RNA. Methods Enzymol. 259:1995;242-261.
    • (1995) Methods Enzymol. , vol.259 , pp. 242-261
    • Serra, M.J.1    Turner, D.H.2
  • 31
    • 0028955347 scopus 로고
    • Minor groove recognition of the conserved G·U pair at the Tetrahymena ribozyme reaction site
    • Strobel A. A., Chech T. R. Minor groove recognition of the conserved G·U pair at the Tetrahymena ribozyme reaction site. Science. 267:1995;675-679.
    • (1995) Science , vol.267 , pp. 675-679
    • Strobel, A.A.1    Chech, T.R.2
  • 32
    • 0023055766 scopus 로고
    • Energetics of internal G·U mismatches in ribooligonucleotide helices
    • Sugimoto N., Kierzek R., Freier S. M., Turner D. H. Energetics of internal G·U mismatches in ribooligonucleotide helices. Biochemistry. 25:1986;5755-5759.
    • (1986) Biochemistry , vol.25 , pp. 5755-5759
    • Sugimoto, N.1    Kierzek, R.2    Freier, S.M.3    Turner, D.H.4
  • 34
    • 0030497977 scopus 로고    scopus 로고
    • Structure of the purine-pyrimidine alternating RNA double helix, r(GUAUAUA)d(C), with a 3′-terminal deoxy residue
    • Wahl M. C., Ban C., Sekharudu C., Ramakrishnan B., Sundaralingam M. Structure of the purine-pyrimidine alternating RNA double helix, r(GUAUAUA)d(C), with a 3′-terminal deoxy residue. Acta Crystallog. sect. D. 52:1996a;655-667.
    • (1996) Acta Crystallog. Sect. D , vol.52 , pp. 655-667
    • Wahl, M.C.1    Ban, C.2    Sekharudu, C.3    Ramakrishnan, B.4    Sundaralingam, M.5
  • 36
    • 0021012648 scopus 로고
    • Detailed analysis of the higher order structue of 16S-like ribosomal nucleic acids
    • Woese C. R., Gutell R., Gupta R., Noller H. F. Detailed analysis of the higher order structue of 16S-like ribosomal nucleic acids. Microbiol. Rev. 47:1983;621-669.
    • (1983) Microbiol. Rev. , vol.47 , pp. 621-669
    • Woese, C.R.1    Gutell, R.2    Gupta, R.3    Noller, H.F.4
  • 37
    • 0028917227 scopus 로고
    • A periodic table of symmetric tandem mismatches in RNA
    • Wu M., McDowell J. A., Turner D. H. A periodic table of symmetric tandem mismatches in RNA. Biochemistry. 34:1995;3204-3211.
    • (1995) Biochemistry , vol.34 , pp. 3204-3211
    • Wu, M.1    McDowell, J.A.2    Turner, D.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.