-
1
-
-
0025878149
-
Amino acid substitution matrices from an information theoretic perspective
-
Altschul S. F. Amino acid substitution matrices from an information theoretic perspective. J. Mol. Biol. 219:1991;555-565.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 555-565
-
-
Altschul, S.F.1
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0027174134
-
Prediction of protein secondary structure by the hidden Markov model
-
Asai K., Hayamizu S., Handa K. Prediction of protein secondary structure by the hidden Markov model. CABIOS. 9(2):1993;141-146.
-
(1993)
CABIOS
, vol.92
, pp. 141-146
-
-
Asai, K.1
Hayamizu, S.2
Handa, K.3
-
4
-
-
0025102756
-
Haemopoietic receptors and helical cytokines
-
Bazan J. F. Haemopoietic receptors and helical cytokines. Immunol. Today. 11:1990a;350-354.
-
(1990)
Immunol. Today
, vol.11
, pp. 350-354
-
-
Bazan, J.F.1
-
5
-
-
0025162844
-
Structural design and molecular evolution of a cytokine receptor superfamily
-
Bazan J. F. Structural design and molecular evolution of a cytokine receptor superfamily. Proc. Natl Acad. Sci. USA. 87:1990b;6934-6938.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 6934-6938
-
-
Bazan, J.F.1
-
6
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein F. C., Koetzle T. F., Williams G. J. B., Meyer E. F., Brice M. D., Rodgers J. R., Kennard O., Shimanovichi T., Tasumi M. The Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112:1977;535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer, E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanovichi, T.8
Tasumi, M.9
-
7
-
-
0025830469
-
A method to identify protein sequences that fold into a known three-dimensional structure
-
Bowie J. U., Luthy R., Eisenberg D. A method to identify protein sequences that fold into a known three-dimensional structure. Science. 253 (5016):1991;164-170.
-
(1991)
Science
, vol.253
, Issue.5016
, pp. 164-170
-
-
Bowie, J.U.1
Luthy, R.2
Eisenberg, D.3
-
8
-
-
0027903113
-
Using Dirichelet Mixture priors to derive hidden Markov models for protein families
-
Brown M., Hughey R., Krogh A., Mian I. S., Sjölander K., Haussler D. Using Dirichelet Mixture priors to derive hidden Markov models for protein families. Proc. 1st Int. Conf. Intel. Sys. Mol. Biol. 1993;47-55.
-
(1993)
Proc. 1st Int. Conf. Intel. Sys. Mol. Biol.
, pp. 47-55
-
-
Brown, M.1
Hughey, R.2
Krogh, A.3
Mian, I.S.4
Sjölander, K.5
Haussler, D.6
-
9
-
-
0014693695
-
A possible three-dimensional structure of bovine a-lactalbumin based on that of hen's egg-white lysozyme
-
Browne W. J., North A. C. T., Phillips D. C., Brew K., Vanaman T. C., Hill R. L. A possible three-dimensional structure of bovine a-lactalbumin based on that of hen's egg-white lysozyme. J. Mol. Biol. 42:1969;65-86.
-
(1969)
J. Mol. Biol.
, vol.42
, pp. 65-86
-
-
Browne, W.J.1
North, A.C.T.2
Phillips, D.C.3
Brew, K.4
Vanaman, T.C.5
Hill, R.L.6
-
10
-
-
0027318317
-
An empirical energy function for threading protein sequence through folding motif
-
Bryant S. H., Lawrence C. E. An empirical energy function for threading protein sequence through folding motif. Proteins: Struct. Funct. Genet. 16:1993;92-112.
-
(1993)
Proteins: Struct. Funct. Genet.
, vol.16
, pp. 92-112
-
-
Bryant, S.H.1
Lawrence, C.E.2
-
11
-
-
0027122748
-
One thousand families for the molecular biologist
-
Chothia C. One thousand families for the molecular biologist. Nature. 357:1992;543-544.
-
(1992)
Nature
, vol.357
, pp. 543-544
-
-
Chothia, C.1
-
13
-
-
0030054216
-
Improving protein secondary structure prediction with aligned homologous sequences
-
Di Francesco V., Garnier J., Munson P. J. Improving protein secondary structure prediction with aligned homologous sequences. Protein Sci. 5:1996;106-113.
-
(1996)
Protein Sci.
, vol.5
, pp. 106-113
-
-
Di Francesco, V.1
Garnier, J.2
Munson, P.J.3
-
15
-
-
0026817136
-
Stein and Moore Award address. Reconstructing history with amino acid sequences
-
Doolittle R. F. Stein and Moore Award address. Reconstructing history with amino acid sequences. Protein Sci. 1 (2):1992;191-200.
-
(1992)
Protein Sci.
, vol.12
, pp. 191-200
-
-
Doolittle, R.F.1
-
16
-
-
0029047319
-
Prediction of protein folding class using global description of amino acid sequence
-
Dubchak I., Muchnik I., Holbrook S. R., Kim S. H. Prediction of protein folding class using global description of amino acid sequence. Proc. Natl Acad. Sci., USA. 92 (19):1995;8700-8704.
-
(1995)
Proc. Natl Acad. Sci., USA
, vol.9219
, pp. 8700-8704
-
-
Dubchak, I.1
Muchnik, I.2
Holbrook, S.R.3
Kim, S.H.4
-
18
-
-
0029259085
-
Maximum Discrimination hidden Markov models of sequence consensus
-
Eddy S. R., Mitchinson G, Durbin R. Maximum Discrimination hidden Markov models of sequence consensus. J. Comput. Biol. 2(1):1995;9-23.
-
(1995)
J. Comput. Biol.
, vol.21
, pp. 9-23
-
-
Eddy, S.R.1
Mitchinson, G.2
Durbin, R.3
-
19
-
-
0029874551
-
Protein fold recognition using sequence-derived predictions
-
Fischer D., Eisenberg D. Protein fold recognition using sequence-derived predictions. Protein Sci. 5:1996;947-955.
-
(1996)
Protein Sci.
, vol.5
, pp. 947-955
-
-
Fischer, D.1
Eisenberg, D.2
-
21
-
-
0027050011
-
Sequence-structure matching in globular proteins: Application to supersecondary and tertiary structure determination
-
Godzik A., Skolnick J. Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination. Proc. Natl Acad. Sci. USA. 89:1992;12098-12102.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 12098-12102
-
-
Godzik, A.1
Skolnick, J.2
-
22
-
-
0026320025
-
Comparative modeling in homologous proteins
-
Greer J. Comparative modeling in homologous proteins. Methods Enzymol. 202:1991;239-252.
-
(1991)
Methods Enzymol.
, vol.202
, pp. 239-252
-
-
Greer, J.1
-
23
-
-
0025008445
-
Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force
-
Hendlich M., Lackner P., Weitckus S., Floeckner H., Froschauer R., Gottsbacher K., Casari G., Sippl M. J. Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force. J. Mol. Biol. 216 (1):1990;167-180.
-
(1990)
J. Mol. Biol.
, vol.2161
, pp. 167-180
-
-
Hendlich, M.1
Lackner, P.2
Weitckus, S.3
Floeckner, H.4
Froschauer, R.5
Gottsbacher, K.6
Casari, G.7
Sippl, M.J.8
-
24
-
-
0024598146
-
Fast and sensitive multiple sequence alignments on a microcomputer
-
Higgins D. G., Sharp P. M. Fast and sensitive multiple sequence alignments on a microcomputer. CABIOS. 5:1989;151-153.
-
(1989)
CABIOS
, vol.5
, pp. 151-153
-
-
Higgins, D.G.1
Sharp, P.M.2
-
26
-
-
0028874810
-
Fold recognition and ab initio structure predictions using hidden Markov models and β-strand pair potential
-
Hubbard T. J., Park J. Fold recognition and ab initio structure predictions using hidden Markov models and β-strand pair potential. Proteins: Struct. Funct. Genet. 23:1995;398-402.
-
(1995)
Proteins: Struct. Funct. Genet.
, vol.23
, pp. 398-402
-
-
Hubbard, T.J.1
Park, J.2
-
27
-
-
0028907511
-
Use of β-strand interaction pseudo-potentials in protein structure prediction and modelling
-
Hubbard T. J. Use of β-strand interaction pseudo-potentials in protein structure prediction and modelling. Proc. 27th Hawaii Int. Conf. Sci. V:1994;336-344.
-
(1994)
Proc. 27Th Hawaii Int. Conf. Sci.
, vol.5
, pp. 336-344
-
-
Hubbard, T.J.1
-
29
-
-
0029887381
-
Markov models for sequence analysis: Extension and analysis of the basic method
-
Hughey R., Krogh A. Markov models for sequence analysis: extension and analysis of the basic method. CABIOS. 12 (2):1996;95-107.
-
(1996)
CABIOS
, vol.122
, pp. 95-107
-
-
Hughey, R.1
Krogh, A.2
-
31
-
-
0026690571
-
A new approach to protein fold recognition
-
Jones D. T., Taylor W. R., Thornton J. M. A new approach to protein fold recognition. Nature. 358:1992;86-89.
-
(1992)
Nature
, vol.358
, pp. 86-89
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
32
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W., Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 22:1983;2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
33
-
-
0028181441
-
Hidden Markov models in computational biology: Applications to protein modeling
-
Krogh A., Brown M., Mian I. S., Sjolander K., Haussler D. Hidden Markov models in computational biology: applications to protein modeling. J. Mol. Biol. 235:1994a;1501-1531.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.S.3
Sjolander, K.4
Haussler, D.5
-
34
-
-
0027944605
-
A hidden Markov model that finds genes in E. coli DNA
-
Krogh A., Mian I. S., Haussler D. A hidden Markov model that finds genes in E. coli DNA. Nucl. Acids Res. 22 (22):1994b;4768-4778.
-
(1994)
Nucl. Acids Res.
, vol.2222
, pp. 4768-4778
-
-
Krogh, A.1
Mian, I.S.2
Haussler, D.3
-
35
-
-
0028818340
-
Protein structure prediction by threading methods: Evaluation of current techniques
-
Lemer C. M.-R., Rooman M. J., Wodak S. J. Protein structure prediction by threading methods: evaluation of current techniques. Proteins: Struct. Funct. Genet. 23 (3):1995;337-355.
-
(1995)
Proteins: Struct. Funct. Genet.
, vol.233
, pp. 337-355
-
-
Lemer, C.M.-R.1
Rooman, M.J.2
Wodak, S.J.3
-
36
-
-
0024283401
-
Improvements in secondary structure prediction method based on search for local sequence homologies and its use as a model building tool
-
Levin J. M., Garnier J. Improvements in secondary structure prediction method based on search for local sequence homologies and its use as a model building tool. Biochim. Biophys. Acta. 955:1988;283-295.
-
(1988)
Biochim. Biophys. Acta
, vol.955
, pp. 283-295
-
-
Levin, J.M.1
Garnier, J.2
-
37
-
-
0027489387
-
Quantification of secondary structure prediction improvement using distantly related proteins
-
Levin J. M., Pascarella S., Argos P., Garnier J. Quantification of secondary structure prediction improvement using distantly related proteins. Protein Eng. 6 (8):1993;849-854.
-
(1993)
Protein Eng.
, vol.68
, pp. 849-854
-
-
Levin, J.M.1
Pascarella, S.2
Argos, P.3
Garnier, J.4
-
38
-
-
0026610767
-
Assessment of protein models with three-dimensional profiles
-
Luthy R., Bowie J. U., Eisenberg D. Assessment of protein models with three-dimensional profiles. Nature. 356 (6364):1992;83-85.
-
(1992)
Nature
, vol.356
, Issue.6364
, pp. 83-85
-
-
Luthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
39
-
-
0029086473
-
Threading analysis suggests that the obese gene product may be a helical cytokine
-
Madej T., Boguski M. S., Bryant S. H. Threading analysis suggests that the obese gene product may be a helical cytokine. FEBS Letters. 373:1995;13-18.
-
(1995)
FEBS Letters
, vol.373
, pp. 13-18
-
-
Madej, T.1
Boguski, M.S.2
Bryant, S.H.3
-
40
-
-
0026785519
-
Contact potential that recognizes the correct folding of globular proteins
-
Maiorov V. N., Crippen G. M. Contact potential that recognizes the correct folding of globular proteins. J. Mol. Biol. 227 (3):1992;876-888.
-
(1992)
J. Mol. Biol.
, vol.2273
, pp. 876-888
-
-
Maiorov, V.N.1
Crippen, G.M.2
-
41
-
-
0028864205
-
A critical assessment of comparative molecular modeling of tertiary structures of proteins
-
Mossiman S., Meleshko R., James M. N. G. A critical assessment of comparative molecular modeling of tertiary structures of proteins. Proteins: Struct. Funct. Genet. 23 (3):1995;301-317.
-
(1995)
Proteins: Struct. Funct. Genet.
, vol.233
, pp. 301-317
-
-
Mossiman, S.1
Meleshko, R.2
James, M.N.G.3
-
42
-
-
0028952322
-
Protein secondary structure prediction using periodic-quadratic-logistic models: Statistical and technical issues
-
Munson P. J., Di Francesco V., Porrelli R. N. Protein secondary structure prediction using periodic-quadratic-logistic models: statistical and technical issues. Proc. 27th Hawaii Int. Conf. Sys. Sci. V:1994;375-384.
-
(1994)
Proc. 27Th Hawaii Int. Conf. Sys. Sci.
, vol.5
, pp. 375-384
-
-
Munson, P.J.1
Di Francesco, V.2
Porrelli, R.N.3
-
43
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin A. G., Brenner S. E., Hubbard T., Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247:1995;536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
44
-
-
0027504808
-
Development of pseudoenergy potentials for assessing protein 3D-1D compatibility and detecting weak homologies
-
Nishikawa K., Matsuo Y. Development of pseudoenergy potentials for assessing protein 3D-1D compatibility and detecting weak homologies. Protein Eng. 6 (8):1994;811-820.
-
(1994)
Protein Eng.
, vol.68
, pp. 811-820
-
-
Nishikawa, K.1
Matsuo, Y.2
-
46
-
-
0028593509
-
Protein superfamilies and domain superfolds
-
Orengo C. A., Jones D. T., Thornton J. M. Protein superfamilies and domain superfolds. Nature. 372:1994;631-634.
-
(1994)
Nature
, vol.372
, pp. 631-634
-
-
Orengo, C.A.1
Jones, D.T.2
Thornton, J.M.3
-
47
-
-
0028186046
-
Using the FASTA program to search protein and DNA sequence databases
-
Pearson W. R. Using the FASTA program to search protein and DNA sequence databases. Methods Mol. Biol. 25:1994;307-331.
-
(1994)
Methods Mol. Biol.
, vol.25
, pp. 307-331
-
-
Pearson, W.R.1
-
48
-
-
0024610919
-
A tutorial on hidden Markov models and selected applications in speech recognition
-
Rabiner L. R. A tutorial on hidden Markov models and selected applications in speech recognition. Proc. of the IEEE. 77:1989;257-286.
-
(1989)
Proc. of the IEEE
, vol.77
, pp. 257-286
-
-
Rabiner, L.R.1
-
49
-
-
0019443447
-
The anatomy and taxonomy of protein structure
-
Richardson J. S. The anatomy and taxonomy of protein structure. Advan. Protein Chem. 34:1981;167-339.
-
(1981)
Advan. Protein Chem.
, vol.34
, pp. 167-339
-
-
Richardson, J.S.1
-
51
-
-
0029186289
-
TOPITS: Threading one-dimensional predictions into three-dimensional structures
-
Rost B. TOPITS: threading one-dimensional predictions into three-dimensional structures. Proc. 3rd Int. Conf. Intel. Sys. Mol. Biol. 1995;314-321.
-
(1995)
Proc. 3rd Int. Conf. Intel. Sys. Mol. Biol.
, pp. 314-321
-
-
Rost, B.1
-
52
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost B., Sander C. Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol. 232:1993;584-599.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
53
-
-
0028081403
-
Structural features can be unconserved in proteins with similar folds
-
Russell R. B., Barton G. J. Structural features can be unconserved in proteins with similar folds. J. Mol. Biol. 244:1994;332-350.
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 332-350
-
-
Russell, R.B.1
Barton, G.J.2
-
54
-
-
0029951995
-
Protein fold recognition by mapping predicted secondary structures
-
Russell R. B., Copley R. R., Barton G. J. Protein fold recognition by mapping predicted secondary structures. J. Mol. Biol. 259:1996;349-365.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 349-365
-
-
Russell, R.B.1
Copley, R.R.2
Barton, G.J.3
-
55
-
-
0028965118
-
Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments
-
Salamov A. A., Solovyev V. V. Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments. J. Mol. Biol. 247:1995;11-15.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 11-15
-
-
Salamov, A.A.1
Solovyev, V.V.2
-
56
-
-
0028202123
-
Generation of interleukin-6 receptor antagonists by molecular-modeling guided mutagenesis of residues important for gp130 activation
-
Savino R., Lahm A., Salvati A. L., Ciapponi L., Sporeno E., Altamura S., Paonessa G., Toniatti C., Ciliberto G. Generation of interleukin-6 receptor antagonists by molecular-modeling guided mutagenesis of residues important for gp130 activation. EMBO J. 11:1994;1357-1367.
-
(1994)
EMBO J.
, vol.11
, pp. 1357-1367
-
-
Savino, R.1
Lahm, A.2
Salvati, A.L.3
Ciapponi, L.4
Sporeno, E.5
Altamura, S.6
Paonessa, G.7
Toniatti, C.8
Ciliberto, G.9
-
57
-
-
0026030641
-
Database of homology derived structures and the structural meaning of sequence alignment
-
Schneider R., Sander C. Database of homology derived structures and the structural meaning of sequence alignment. Proteins: Struct. Funct. Genet. 9:1991;56-68.
-
(1991)
Proteins: Struct. Funct. Genet.
, vol.9
, pp. 56-68
-
-
Schneider, R.1
Sander, C.2
-
59
-
-
2442654859
-
Identification and expression cloning of a leptin receptor, OB-R
-
Tartaglia L. A., Dembski M., Weng X., Deng N., Culpepper J., Devos R., Richards G. J., Campfield A., Clark F. T., Deeds J., Muir C., Sanker S., Moriarty A., Moore K. J., Smutko J. S., Mays G. G., Woolf E. A., Monroe C. A., Tepper R. I. Identification and expression cloning of a leptin receptor, OB-R. Cell. 83 (7):1995;1263-1271.
-
(1995)
Cell
, vol.837
, pp. 1263-1271
-
-
Tartaglia, L.A.1
Dembski, M.2
Weng, X.3
Deng, N.4
Culpepper, J.5
Devos, R.6
Richards, G.J.7
Campfield, A.8
Clark, F.T.9
Deeds, J.10
Muir, C.11
Sanker, S.12
Moriarty, A.13
Moore, K.J.14
Smutko, J.S.15
Mays, G.G.16
Woolf, E.A.17
Monroe, C.A.18
Tepper, R.I.19
-
60
-
-
0025260903
-
Interleukin-6: An overview
-
Van Snick J. Interleukin-6: an overview. Annu. Rev. Immunol. 8:1990;253-278.
-
(1990)
Annu. Rev. Immunol.
, vol.8
, pp. 253-278
-
-
Van Snick, J.1
-
61
-
-
0027458885
-
Three-dimensional profiles from residue-pair preferences: Identification of sequences with beta/alpha fold
-
Wilmanns M., Eisenberg D. Three-dimensional profiles from residue-pair preferences: identification of sequences with beta/alpha fold. Proc. Natl Acad. Sci. USA. 90:1993;1379-1383.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 1379-1383
-
-
Wilmanns, M.1
Eisenberg, D.2
-
62
-
-
0028139089
-
Positional cloning of the mouse obese gene and its human homologue
-
Zhang Y., Proenca R., Maffei M., Barone M., Leopold L., Friedman J. M. Positional cloning of the mouse obese gene and its human homologue. Nature. 372:1994;425-432.
-
(1994)
Nature
, vol.372
, pp. 425-432
-
-
Zhang, Y.1
Proenca, R.2
Maffei, M.3
Barone, M.4
Leopold, L.5
Friedman, J.M.6
|