NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions

Biochemistry

Volumn 36, Issue 13, 1997, Pages 3959-3970

  Zhang, Ouwen ^a,b,c   Forman Kay, Julie D ^a,b  

^a HOSPITAL FOR SICK CHILDREN   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

^c UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

GUANIDINE; GUANINE NUCLEOTIDE EXCHANGE FACTOR; SYNTHETIC PEPTIDE;

AMINO TERMINAL SEQUENCE; AQUEOUS SOLUTION; ARTICLE; DROSOPHILA; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; NUCLEAR OVERHAUSER EFFECT; PEPTIDE SYNTHESIS; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN PURIFICATION;

AMINO ACID SEQUENCE; ANIMALS; DROSOPHILA; DROSOPHILA PROTEINS; GUANIDINE; GUANIDINES; INSECT PROTEINS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDES; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; SRC HOMOLOGY DOMAINS;

EID: 0030900199     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9627626     Document Type: Article

References (79)

1. Abkevich, V. I., Gutin, A. M., & Shakhnovich, E. I. (1994) Biochemistry 33, 10026-10036.
2. Alexandrescu, A. T., Abeygunawardana, C., & Shortle, D. (1994a) Biochemistry 33, 1063-1072.
3. Alexandrescu, A. T., Ng, Y. L., & Dobson, C. M. (1994b) J. Mol. Biol. 235, 587-599.
4. Arcus, V. L., Vuilleumier, S., Freund, S. M. V., Bycroft, M., & Fersht, A. R. (1995) J. Mol. Biol. 254, 305-321.
5. Berg, J. M., & Shi, Y. (1996) Science 271, 1081-1085.
6. Blanco, F. J., Rivas, G., & Serrano, L. (1994) Nut. Struct. Biol. 1, 584-590.
7. Buck, M., Schwalbe, H., & Dobson, C. M. (1995) Biochemistry 34, 13219-13232.
8. Creighton, T. E. (1992) in Protein Folding (Creighton, T. E., Ed.) W. H. Freeman and Company, New York.
9. Dobson, C. M. (1992) Curr. Opin. Struct. Biol. 2, 6-12.
10. Dyson, H. J., & Wright, P. E. (1991) Annu. Rev. Biophys. Biophys. Chem. 20, 519-538.
11. Dyson, H. J., & Wright, P. E. (1993) Curr. Opin. Struct. Biol. 3, 60-65.
12. Dyson, H. J., Ranee, M., Houghten, R. A., Lerner, R. A., & Wright, P. E. (1988) J. Mol. Biol. 201, 161-200.
13. Dyson, H. J., Merutka, G., Waltho, J. P., Lerner, R. A., & Wright, P. E. (1992a) J. Mol. Biol. 226, 795-817.
14. Dyson, H. J., Sayre, J. R., Merutka, G., Shin, H.-C., Lerner, R. A., & Wright, P. E. (1992b) J. Mol. Biol. 226, 819-835.
15. Farrow, N. A., Zhang, O., Forman-Kay, J. D., & Kay, L. E. (1997) Biochemistry (in press).
16. Feng, S., Chen, J. K., Yu, H., Simon, J. A., & Schrieber, S. L. (1994) Science 266, 1241-1247.
17. Fersht, A. R. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 10869-10873.
18. Frank, M. K., Clore, G. M., & Gronenborn, A. M. (1995) Protein Sci. 4, 2605-2615.
19. Frenkiel, T., Bauer, C., Carr, M. D., Birdsall, B., & Feeney, J. (1990) J. Magn. Reson. 90, 420-425.
20. Gast, K., Damaschun, H., Eckert, K., Schulze-Forster, K., Maurer, H. R., Muller-Frohne, M., Zirwer, D., Czarnecki, J., & Damaschun, G. (1995) Biochemistry 34, 13211-13218.
21. Goudreau, N., Cornille, F., Duchesne, M., Parker, F., Tocque, B., Garbay, C., & Roques, B. P. (1994) Nat. Struct. Biol. 1, 898-907.
22. Grzesiek, S., Anglister, J., & Bax, A. (1993) J. Magn. Reson. B 101, 114-119.
23. Guruprasad, L., Dhanaraj, V., Timm, D., Blundell, T. L., Gout, I., & Waterfield, M. D. (1995) J. Mol. Biol. 248, 856-866.
24. Ikura, M., Bax, A., Clore, G. M., & Gronenborn, A. M. (1990) J. Am. Chem. Soc. 112, 9020-9022.
25. Itzhaki, L. S., Otzen, D. E., & Fersht, A. R. (1995) J. Mol. Biol. 254, 260-288.
26. Karplus, M., & Weaver, D. L. (1976) Nature 260, 404-406.
27. Kay, L. E., Keifer, P., & Saarinen, T. (1992) J. Am. Chem. Soc. 114, 10663-10665.
28. Kim, P. S., & Baldwin, R. L. (1990) Annu. Rev. Biochem. 59, 631-660.
29. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
30. Kriwacki, R. W., Hengst, L., Tennant, L., Reed, S. I., & Wright, P. E. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 11504-11509.
31. Kuriyan, J., & Cowburn, D. (1993) Curr. Opin. Struct. Biol. 3, 828-837.
32. Lewis, P. N., Momany, F. A., & Scheraga, H. A. (1971) Proc. Natl. Acad. Sci. U.S.A. 68, 2293-2297.
33. Lim, W., Fox, R. O., & Richards, F. M. (1994) Protein Sci. 3, 1261-1266.
34. Logan, T. M., Olejniczak, E. T., Xu, R. X., & Fesik, S. W. (1993) J. Biomol. NMR 3, 225-231.
35. Logan, T. M., Theriault, Y., & Fesik, S. W. (1994) J. Mol. Biol. 236, 637-648.
36. Maignan, S., Guillotesu, J.-P., Fromage, N., Arnoux, B., Becquart, J., & Ducruix, A. (1995) Science 268, 291-293.
37. Merutka, G., Dyson, H. J., & Wright, P. E. (1995) J. Biomol. NMR 5, 14-24.
38. Montelione, G. T., Lyons, B. A., Emerson, S. D., & Tashiro, M. (1992) J. Am. Chem. Soc. 114, 10974-10975.
39. Neri, D., Szyperski, T., Otting, G., Senn, H., & Wüthrich, K. (1989) Biochemistry 28, 7510-7516.
40. Neri, D., Billeter, M., Wider, G., & Wüthrich, K. (1992) Science 257, 1559-1563.
41. Olivier, J. P., Raabe, T., Henkemeyer, M., Dickerson, B., Mbamalu, G., Margolis, B., Schlessinger, J., Hafen, E., & Pawson, T. (1993) Cell 73, 179-191.
42. Onuchic, J. N., Wolynes, P. G., Luthey-Schulten, Z., & Socci, N. D. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 3626-3630.
43. Otzen, D. E., Itzhaki, L. S., Elmasry, N. F., Jackson, S. E., & Fersht, A. R. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 10422-10425.
44. Pace, C. N. (1975) Crit. Rev. Biochem. 3, 1-43.
45. Pace, C. N., & McGrath, T. (1980) J. Biol. Chem. 255, 3862-3865.
46. Pawson, T. (1995) Nature 373, 573-580.
47. Ptitsyn, O. B. (1992) Curr. Opin. Struct. Biol. 2, 13-20.
48. Schellman, J. A. (1975) Biopolymers 14, 999-1018.
49. Schleucher, J., Sattler, M., & Griesinger, C. (1993) Angew. Chem., Int. Ed. Engl. 32, 1489-1491.
50. Schweers, O., Schonbrunn-Hanebeck, E., Marx, A., & Mandelkow, E. (1994) J. Biol. Chem. 269, 24290-24297.
51. Shen, F., Triezenberg, S. J., Hensley, P., Porter, D., & Knutson, J. R. (1996) J. Biol. Chem. 271, 4827-4837.
52. Shin, H. C., Merutka, G., Waltho, J. P., Wright, P. E., & Dyson, H. J. (1993) Biochemistry 32, 6348-6355.
53. Shortle, D. (1993) Curr. Opin. Struct. Biol. 3, 66-74.
54. Shortle, D. (1996) Curr. Opin. Struct. Biol. 6, 24-30.
55. Simon, M. A., Dodson, G. S., & Rubin, G. M. (1993) Cell 73, 169-177.
56. Skolnick, J., & Kolinski, A. (1989) Annu. Rev. Phys. Chem. 40, 207-235.
57. Smith, L. J., Bolin, K. A., Schwalbe, H., MacArthur, M. W., Thornton, J. M., & Dobson, C. M. (1996) J. Mol. Biol. 255, 494-506.
58. Spolar, R. S., & Record, M. T., Jr. (1994) Science 263, 777-784.
59. Terasawa, H., Kohda, D., Hatanaka, H., Tsuchiya, S., Ogura, K., Nagata, K., Ishii, S., Mandiyan, V., Ullrich, A., Schlessinger, J., & Inagaki, F. (1994) Nat. Struct. Biol. 1, 891-897.
60. Tobias, D. J., Mertz, J. E., & Brooks, C. L., III (1991) Biochemistry 30, 6054-6058.
61. Viguera, A. R., Martinez, J. C., Filimonov, V. V., Mateo, P. L., & Serrano, L. (1994) Biochemistry 33, 2142-2150.
62. Viguera, A. R., Jimenez, M. A., Rico, M., & Serrano, L. (1996) J. mol. Biol. 255, 507-521.
63. Vuister, G. W., & Bax, A. (1993) J. Am. Chem. Soc. 115, 7772-7777.
64. Waltho, J. P., Feher, V. A., Merutka, G., Dyson, H. J., & Wright, P. E. (1993) Biochemistry 32, 6337-6347.
65. Wang, Y., & Shortle, D. (1995) Biochemistry 34, 15895-15905.
66. Weinreb, P. H., Zhen, W., Poon, A. W., Conway, K. A., & Lansbury, P. T., Jr. (1996) Biochemistry 35, 13709-13715.
67. Wilson, I. A., & Stanfield, R. L. (1994) Curr. Opin. Struct. Biol. 4, 857-867.
68. Wishart, D. S., Bigam, C. G., Holm, A., Hodges, R. S., & Sykes, B. D. (1995) J. Biomol. NMR 5, 67-81.
69. Wittekind, M., Mapelli, C., Farmer, B. T., II, Suen, K.-L., Goldfarb, V., Tsao, J., Lavoie, T., Barbacid, M., Meyers, C. A., & Mueller, L. (1994) Biochemistry 33, 13531-13539.
70. Wright, P. E., Dyson, H. J., & Lerner, R. A. (1988) Biochemistry 27, 7167-7175.
71. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, John Wiley & Sons, New York.
72. Wüthrich, K. (1994) Curr. Opin. Struct. Biol. 4, 93-99.
73. Yang, A.-S., Hitz, B., & Honig, B. (1996) J. Mol. Biol. 259, 873-882.
74. Yao, J., Feher, V. A., Espejo, B. F., Raymond, M. T., Wright, P. E., & Dyson, H. J. (1994) J. Mol. Biol. 243, 736-753.
75. th International Conference on Magnetic Resonance in Biological Systems, Keystone, CO.
76. Zhang, O., & Forman-Kay, J. D. (1995) Biochemistry 34, 6784-6794.
77. Zhang, O., Kay, L. E., Olivier, J. P., & Forman-Kay, J. D. (1994) J. Biomol. NMR 4, 845-858.
78. Zhang, O., Forman-Kay, J. D., Shortle, D., & Kay, L. E. (1997) J. Biomol. NMR (in press).
79. Zimmerman, S. S., & Scheraga, H. A. (1977) Proc. Natl. Acad. Sci. U.S.A. 74, 4126-4129.