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Volumn 5, Issue , 2004, Pages

The retinome - Defining a reference transcriptome of the adult mammalian retina/retinal pigment epithelium

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ADULTHOOD; ANALYTIC METHOD; ARTICLE; CHROMOSOME STRUCTURE; COMPUTER INTERFACE; CONTROLLED STUDY; GENE CLUSTER; GENE EXPRESSION; GENE LOCATION; GENE MAPPING; GENETIC DATABASE; GENETIC DISORDER; GENETIC TRANSCRIPTION; GENOME ANALYSIS; HUMAN; MAMMAL; MATHEMATICAL COMPUTING; NONHUMAN; PIGMENT EPITHELIUM; PUBLICATION; RETINA; RETINA DISEASE; ADULT; ANIMAL; ANTIBODY SPECIFICITY; CATTLE; CHEMISTRY; CHROMOSOME MAP; DOG; GENETICS; GENOME; META ANALYSIS; MOUSE; SPECIES DIFFERENCE;

EID: 9444222475     PISSN: 14712164     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2164-5-50     Document Type: Article
Times cited : (25)

References (69)
  • 1
    • 9444234281 scopus 로고    scopus 로고
    • RetinaCentral - A portal to the Human Retina
    • RetinaCentral - A portal to the Human Retina [http://www.retinacentral.org/]
  • 3
    • 0034870041 scopus 로고    scopus 로고
    • The fundamental plan of the retina
    • Masland RH: The fundamental plan of the retina. Nat Neurosci 2001, 4:877-886.
    • (2001) Nat. Neurosci. , vol.4 , pp. 877-886
    • Masland, R.H.1
  • 5
    • 0034007194 scopus 로고    scopus 로고
    • Ca(2+)-binding proteins in the retina: Structure, function, and the etiology of human visual diseases
    • Palczewski K, Polans AS, Baehr W, Ames JB: Ca(2+)-binding proteins in the retina: structure, function, and the etiology of human visual diseases. Bioessays 2000, 22:337-350.
    • (2000) Bioessays , vol.22 , pp. 337-350
    • Palczewski, K.1    Polans, A.S.2    Baehr, W.3    Ames, J.B.4
  • 6
    • 0042285478 scopus 로고    scopus 로고
    • Genetic defects in vitamin A metabolism of the retinal pigment epithelium
    • Thompson DA, Gal A: Genetic defects in vitamin A metabolism of the retinal pigment epithelium. Dev Ophthalmol 2003, 37:141-154.
    • (2003) Dev. Ophthalmol. , vol.37 , pp. 141-154
    • Thompson, D.A.1    Gal, A.2
  • 7
    • 0033399668 scopus 로고    scopus 로고
    • Molecular genetics of human retinal disease
    • Rattner A, Sun H, Nathans J: Molecular genetics of human retinal disease. Annu Rev Genet 1999, 33:89-131.
    • (1999) Annu. Rev. Genet. , vol.33 , pp. 89-131
    • Rattner, A.1    Sun, H.2    Nathans, J.3
  • 8
    • 0042357381 scopus 로고    scopus 로고
    • Progress toward understanding the genetic and biochemical mechanisms of inherited photoreceptor degenerations
    • Pacione LR, Szego MJ, Ikeda S, Nishina PM, McInnes RR: Progress toward understanding the genetic and biochemical mechanisms of inherited photoreceptor degenerations. Annu Rev Neurosci 2003, 26:657-700.
    • (2003) Annu. Rev. Neurosci. , vol.26 , pp. 657-700
    • Pacione, L.R.1    Szego, M.J.2    Ikeda, S.3    Nishina, P.M.4    McInnes, R.R.5
  • 13
    • 0037268694 scopus 로고    scopus 로고
    • Computational comparison of two mouse draft genomes and the human golden path
    • Xuan Z, Wang J, Zhang MQ: Computational comparison of two mouse draft genomes and the human golden path. Genome Biol 2003, 4:R1.
    • (2003) Genome Biol. , vol.4
    • Xuan, Z.1    Wang, J.2    Zhang, M.Q.3
  • 14
    • 0035417329 scopus 로고    scopus 로고
    • Assessment of the total number of human transcription units
    • Das M, Burge CB, Park E, Colinas J, Pelletier J: Assessment of the total number of human transcription units. Genomics 2001, 77:71-78.
    • (2001) Genomics , vol.77 , pp. 71-78
    • Das, M.1    Burge, C.B.2    Park, E.3    Colinas, J.4    Pelletier, J.5
  • 16
    • 0242636197 scopus 로고    scopus 로고
    • Alternative splicing and evolution
    • Boue S, Letunic I, Bork P: Alternative splicing and evolution. Bioessays 2003, 25: 1031-1034.
    • (2003) Bioessays , vol.25 , pp. 1031-1034
    • Boue, S.1    Letunic, I.2    Bork, P.3
  • 17
    • 0038349624 scopus 로고    scopus 로고
    • Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome
    • Zavolan M, Kondo S, Schonbach C, Adachi J, Hume DA, Hayashizaki Y, Gaasterland T: Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome. Genome Res 2003, 13: 1290-1300.
    • (2003) Genome Res. , vol.13 , pp. 1290-1300
    • Zavolan, M.1    Kondo, S.2    Schonbach, C.3    Adachi, J.4    Hume, D.A.5    Hayashizaki, Y.6    Gaasterland, T.7
  • 19
    • 33947273786 scopus 로고    scopus 로고
    • Identifying and mapping novel retinal-expressed ESTs from humans
    • Malone K, Sohocki MM, Sullivan LS, Daiger SP: Identifying and mapping novel retinal-expressed ESTs from humans. Mol Vis 1999, 5:5.
    • (1999) Mol. Vis. , vol.5 , pp. 5
    • Malone, K.1    Sohocki, M.M.2    Sullivan, L.S.3    Daiger, S.P.4
  • 20
    • 0033563233 scopus 로고    scopus 로고
    • Localization of retina/pineal-expressed sequences: Identification of novel candidate genes for inherited retinal disorders
    • Sohocki MM, Malone KA, Sullivan LS, Daiger SP: Localization of retina/pineal-expressed sequences: identification of novel candidate genes for inherited retinal disorders Genomics 1999, 58:29-33.
    • (1999) Genomics , vol.58 , pp. 29-33
    • Sohocki, M.M.1    Malone, K.A.2    Sullivan, L.S.3    Daiger, S.P.4
  • 21
    • 0033775182 scopus 로고    scopus 로고
    • A novel resource for the study of genes expressed in the adult human retina
    • Bortoluzzi S, d'Alessi F, Danieli GA: A novel resource for the study of genes expressed in the adult human retina. Invest Ophthalmol Vis Sci 2000, 41: 3305-3308.
    • (2000) Invest. Ophthalmol. Vis. Sci. , vol.41 , pp. 3305-3308
    • Bortoluzzi, S.1    d'Alessi, F.2    Danieli, G.A.3
  • 23
    • 0037195178 scopus 로고    scopus 로고
    • A computational/functional genomics approach for the enrichment of the retinal transcriptome and the identification of positional candidate retinopathy genes
    • Katsanis N, Worley KC, Gonzalez G, Ansley SJ, Lupski JR: A computational/functional genomics approach for the enrichment of the retinal transcriptome and the identification of positional candidate retinopathy genes. Proc Natl Acad Sci U S A 2002, 99: 14326-14331.
    • (2002) Proc. Natl. Acad. Sci. U S A , vol.99 , pp. 14326-14331
    • Katsanis, N.1    Worley, K.C.2    Gonzalez, G.3    Ansley, S.J.4    Lupski, J.R.5
  • 24
    • 0029864625 scopus 로고    scopus 로고
    • Characterization of a human fovea cDNA library and regional differential gene expression in the human retina
    • Bernstein SL, Borst DE, Neuder ME, Wong P: Characterization of a human fovea cDNA library and regional differential gene expression in the human retina. Genomics 1996, 32: 301-308.
    • (1996) Genomics , vol.32 , pp. 301-308
    • Bernstein, S.L.1    Borst, D.E.2    Neuder, M.E.3    Wong, P.4
  • 27
    • 0346949038 scopus 로고    scopus 로고
    • Expressed sequence tag analysis of human retina for the NEIBank Project: Retbindin, an abundant, novel retinal cDNA and alternative splicing of other retina-preferred gene transcripts
    • Wistow G, Bernstein SL, Wyatt MK, Ray S, Behal A, Touchman JW, Bouffard G, Smith D, Peterson K: Expressed sequence tag analysis of human retina for the NEIBank Project: retbindin, an abundant, novel retinal cDNA and alternative splicing of other retina-preferred gene transcripts. Mol Vis 2002, 8:196-204.
    • (2002) Mol. Vis. , vol.8 , pp. 196-204
    • Wistow, G.1    Bernstein, S.L.2    Wyatt, M.K.3    Ray, S.4    Behal, A.5    Touchman, J.W.6    Bouffard, G.7    Smith, D.8    Peterson, K.9
  • 28
    • 0345772133 scopus 로고    scopus 로고
    • Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: Over 6000 non-redundant transcripts, novel genes and splice variants
    • Wistow G, Bernstein SL, Wyatt MK, Fariss RN, Behal A, Touchman JW, Bouffard G, Smith D, Peterson K: Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: over 6000 non-redundant transcripts, novel genes and splice variants. Mol Vis 2002, 8:205-220.
    • (2002) Mol. Vis. , vol.8 , pp. 205-220
    • Wistow, G.1    Bernstein, S.L.2    Wyatt, M.K.3    Fariss, R.N.4    Behal, A.5    Touchman, J.W.6    Bouffard, G.7    Smith, D.8    Peterson, K.9
  • 29
    • 3042694499 scopus 로고    scopus 로고
    • Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina
    • Yu J, Farjo R, MacNee SP, Baehr W, Stambolian DE, Swaroop A: Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina. Genome Biol 2003, 4: 65.
    • (2003) Genome Biol. , vol.4
    • Yu, J.1    Farjo, R.2    MacNee, S.P.3    Baehr, W.4    Stambolian, D.E.5    Swaroop, A.6
  • 30
    • 0033986175 scopus 로고    scopus 로고
    • Expression profile and chromosomal location of cDNA clones, identified from an enriched adult retina library
    • Sinha S, Sharma A, Agarwal N, Swaroop A, Yang-Feng TL: Expression profile and chromosomal location of cDNA clones, identified from an enriched adult retina library. Invest Ophthalmol Vis Sci 2000, 41:24-28.
    • (2000) Invest. Ophthalmol. Vis. Sci. , vol.41 , pp. 24-28
    • Sinha, S.1    Sharma, A.2    Agarwal, N.3    Swaroop, A.4    Yang-Feng, T.L.5
  • 31
    • 0034816592 scopus 로고    scopus 로고
    • Generation and analysis of canine retinal ESTs: Isolation and expression of retina-specific gene transcripts
    • Lin CT, Sargan DR: Generation and analysis of canine retinal ESTs: isolation and expression of retina-specific gene transcripts. Biochem Biophys Res Commun 2001, 282:394-403.
    • (2001) Biochem. Biophys. Res. Commun. , vol.282 , pp. 394-403
    • Lin, C.T.1    Sargan, D.R.2
  • 32
    • 0036501462 scopus 로고    scopus 로고
    • Identification of an IMPDH1 mutation in autosomal dominant retinitis pigmentosa (RP10) revealed following comparative microarray analysis of transcripts derived from retinas of wild-type and Rho(-/-) mice
    • Kennan A, Aherne A, Palfi A, Humphries M, McKee A, Stitt A, Simpson DA, Demtroder K, Orntoft T, Ayuso C, et al.: Identification of an IMPDH1 mutation in autosomal dominant retinitis pigmentosa (RP10) revealed following comparative microarray analysis of transcripts derived from retinas of wild-type and Rho(-/-) mice. Hum Mol Genet 2002, 11:547-557.
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 547-557
    • Kennan, A.1    Aherne, A.2    Palfi, A.3    Humphries, M.4    McKee, A.5    Stitt, A.6    Simpson, D.A.7    Demtroder, K.8    Orntoft, T.9    Ayuso, C.10
  • 34
    • 0035977135 scopus 로고    scopus 로고
    • Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes
    • Blackshaw S, Fraioli RE, Furukawa T, Cepko CL: Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes. Cell 2001, 107:579-589.
    • (2001) Cell , vol.107 , pp. 579-589
    • Blackshaw, S.1    Fraioli, R.E.2    Furukawa, T.3    Cepko, C.L.4
  • 35
    • 0037039378 scopus 로고    scopus 로고
    • Profile of the genes expressed in the human peripheral retina, macula, and retinal pigment epithelium determined through serial analysis of gene expression (SAGE)
    • Sharon D, Blackshaw S, Cepko CL, Dryja TP: Profile of the genes expressed in the human peripheral retina, macula, and retinal pigment epithelium determined through serial analysis of gene expression (SAGE). Proc Natl Acad Sci U S A 2002, 99:315-320.
    • (2002) Proc. Natl. Acad. Sci. U S A , vol.99 , pp. 315-320
    • Sharon, D.1    Blackshaw, S.2    Cepko, C.L.3    Dryja, T.P.4
  • 38
    • 0347265312 scopus 로고    scopus 로고
    • Identification of novel bovine RPE and retinal genes by subtractive hybridization
    • Sharma S, Chang JT, Della NG, Campochiaro PA, Zack DJ: Identification of novel bovine RPE and retinal genes by subtractive hybridization. Mol Vis 2002, 8:251-258.
    • (2002) Mol. Vis. , vol.8 , pp. 251-258
    • Sharma, S.1    Chang, J.T.2    Della, N.G.3    Campochiaro, P.A.4    Zack, D.J.5
  • 39
    • 9444235458 scopus 로고    scopus 로고
    • Identifying differentially expressed genes in the mammalian retina and the retinal pigment epithelium by suppression subtractive hybridization
    • in press
    • Schulz HL, Rahman FA, Fadl El, Moule FM, Stojic J, Gehrig A, Weber BH: Identifying differentially expressed genes in the mammalian retina and the retinal pigment epithelium by suppression subtractive hybridization. Cytogenet Genome Research in press.
    • Cytogenet. Genome Research
    • Schulz, H.L.1    Rahman, F.A.2    Fadl, E.I.3    Moule, F.M.4    Stojic, J.5    Gehrig, A.6    Weber, B.H.7
  • 40
    • 0034832202 scopus 로고    scopus 로고
    • SGP-1: Prediction and validation of homologous genes based on sequence alignments
    • Wiehe T, Gebauer-Jung S, Mitchell-Olds T, Guigo R: SGP-1: prediction and validation of homologous genes based on sequence alignments. Genome Res 2001, 11:1574-1583.
    • (2001) Genome Res. , vol.11 , pp. 1574-1583
    • Wiehe, T.1    Gebauer-Jung, S.2    Mitchell-Olds, T.3    Guigo, R.4
  • 41
    • 0035162594 scopus 로고    scopus 로고
    • RefSeq and LocusLink: NCBI gene-centered resources
    • Pruitt KD, Maglott DR: RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res 2001, 29: 37-140.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 137-140
    • Pruitt, K.D.1    Maglott, D.R.2
  • 42
    • 9444253871 scopus 로고    scopus 로고
    • National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health [ftp://ftp.ncbi.nih.gov]
    • National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health [ftp://ftp.ncbi.nih.gov]
  • 43
    • 0036493224 scopus 로고    scopus 로고
    • A question of size: The eukaryotic proteome and the problems in defining it
    • Harrison PM, Kumar A, Lang N, Snyder M, Gerstein M: A question of size: the eukaryotic proteome and the problems in defining it Nucleic Acids Res 2002, 30:1083-1090.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1083-1090
    • Harrison, P.M.1    Kumar, A.2    Lang, N.3    Snyder, M.4    Gerstein, M.5
  • 44
    • 0242317345 scopus 로고    scopus 로고
    • Complex controls: The role of alternative promoters in mammalian genomes
    • Landry JR, Mager DL, Wilhelm BT: Complex controls: the role of alternative promoters in mammalian genomes. [iTrends Genet 2003, 19:640-648.
    • (2003) Trends Genet. , vol.19 , pp. 640-648
    • Landry, J.R.1    Mager, D.L.2    Wilhelm, B.T.3
  • 45
    • 1642473041 scopus 로고    scopus 로고
    • How prevalent is functional alternative splicing in the human genome?
    • Sorek R, Shamir R, Ast G: How prevalent is functional alternative splicing in the human genome? Trends Genet 2004, 20:68-71.
    • (2004) Trends Genet. , vol.20 , pp. 68-71
    • Sorek, R.1    Shamir, R.2    Ast, G.3
  • 48
    • 1242271304 scopus 로고    scopus 로고
    • Allele-specific gene expression uncovered
    • Knight JC: Allele-specific gene expression uncovered. Trends Genet 2004, 20:113-116.
    • (2004) Trends Genet. , vol.20 , pp. 113-116
    • Knight, J.C.1
  • 52
    • 0017220998 scopus 로고
    • The expression of three abundance classes of messenger RNA in mouse tissues
    • Hastie ND, Bishop JO: The expression of three abundance classes of messenger RNA in mouse tissues. Cell 1976, 9: 61-774.
    • (1976) Cell , vol.9 , pp. 761-774
    • Hastie, N.D.1    Bishop, J.O.2
  • 56
    • 0141854009 scopus 로고    scopus 로고
    • The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes
    • Versteeg R, van Schaik BD, van Batenburg MF, Roos M, Monajemi R, Caron H, Bussemaker HJ, van Kampen AH: The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. Genome Res 2003, 13:1998-2004.
    • (2003) Genome Res. , vol.13 , pp. 1998-2004
    • Versteeg, R.1    van Schaik, B.D.2    van Batenburg, M.F.3    Roos, M.4    Monajemi, R.5    Caron, H.6    Bussemaker, H.J.7    van Kampen, A.H.8
  • 58
    • 84872268104 scopus 로고    scopus 로고
    • Retinal Information Network
    • Retinal Information Network [http://www.sph.uth.tmc.edu/Retnet/]
  • 59
    • 9444236557 scopus 로고    scopus 로고
    • NCBI, SAGE Maps [ftp://ftp.ncbi.nih.gov/pub/sage/map/Hs/NlaIII]
    • NCBI, SAGE Maps [ftp://ftp.ncbi.nih.gov/pub/sage/map/Hs/NlaIII]
  • 60
    • 9444225871 scopus 로고    scopus 로고
    • NCBI, SAGE Maps [ftp://ftp.ncbi.nih.gov/pub/sage/map/Hs/Sau3A]
    • NCBI, SAGE Maps [ftp://ftp.ncbi.nih.gov/pub/sage/map/Hs/Sau3A]
  • 61
    • 84885687030 scopus 로고    scopus 로고
    • HomoloGene
    • NCBI
    • NCBI, HomoloGene [http://www.ncbi.nlm.nih.gov/HomoloGene]
  • 62
    • 79953842189 scopus 로고    scopus 로고
    • Basic local alignment search tool (BLAST)
    • Basic local alignment search tool (BLAST) [http://www.ncbi.nlm.nih.gov/BLAST]
  • 63
    • 9444285340 scopus 로고    scopus 로고
    • Gene Library Summariser (GLS)
    • Gene Library Summariser (GLS) [http://cgap.nci.nih.gov/Tis sues/LibrarySummarizer]
  • 64
    • 9444253872 scopus 로고    scopus 로고
    • UCSC Genomic Bioinformatics, Table Browser
    • UCSC Genomic Bioinformatics, Table Browser [http://genome.ucsc.edu/cgi-bin/hgText]
  • 66
    • 0001884644 scopus 로고
    • Individual comparisons by ranking methods
    • Wilcoxon F: Individual comparisons by ranking methods. Biometrics 1945, 1: 80-83.
    • (1945) Biometrics , vol.1 , pp. 80-83
    • Wilcoxon, F.1
  • 67
    • 9444269071 scopus 로고    scopus 로고
    • Unigene
    • NCBI
    • NCBI, Unigene [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=Search&DB=unigene]
  • 68
    • 9444294375 scopus 로고    scopus 로고
    • Retina cDNA Unnormalised Library
    • National Eye Institute (NEI)
    • National Eye Institute (NEI), Retina cDNA Unnormalised Library [http://neibank.nei.nih.gov/libs/NbLib0042/NbLib0042.shtml]
  • 69
    • 9444234280 scopus 로고    scopus 로고
    • RPE/choroid cDNA Unnormalised Library
    • National Eye Institute (NEI)
    • National Eye Institute (NEI), RPE/choroid cDNA Unnormalised Library [http://neibank.nei.nih.gov/libs/NbLib0047/NbLib0047.shtml]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.