A computational/functional genomics approach for the enrichment of the retinal transcriptome and the identification of positional candidate retinopathy genes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 99, Issue 22, 2002, Pages 14326-14331

  Katsanis, Nicholas ^a,b,c   Worley, Kim C ^a   Gonzalez, Guillermo ^a   Ansley, Stephen J ^b   Lupski, James R ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE MAPPING; GENETIC ANALYSIS; GENOMICS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RETINA; RETINOPATHY; SEQUENCE ANALYSIS;

AUTOMATIC DATA PROCESSING; DATABASES, NUCLEIC ACID; EXPRESSED SEQUENCE TAGS; GENOME; HUMANS; RETINA; RETINAL DISEASES; TRANSCRIPTION, GENETIC;

EID: 0037195178     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.222409099     Document Type: Article

References (30)

1. Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., Smith, H. O., Yandell, M., Evans, C. A., Holt, R. A., et al. (2001) Science 291, 1304-1351.
2. Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., et al. (2001) Nature 409, 860-921.
3. Kapranov, P., Cawley, S. E., Drenkow, J., Bekiranov, S., Strausberg, R. L., Fodor, S. P. A. & Gingeras, T. R. (2002) Science 296, 916-919.
4. Hogenesch, J. B., Ching, K. A., Batalov, S., Su, A. I., Walker, J. R., Zhou, Y., Kay, S. A., Schultz, P. G. & Cooke, M. P. (2001) Cell 106, 413-415.
5. Jimenez-Sanchez, G., Childs, B. & Valle, D. (2001) Nature 409, 853-855.
6. den Hollander, A. I., van Driel, M. A., de Kok, Y. J. M., van de Pol, D. J. R., Hoyng, C. B., Brunner, H. G., Deutman, A. F. & Cremers, F. P. M. (1999) Genomics 58, 240-249.
7. Quackenbush, J., Liang, F., Holt, I., Pertea, G. & Upton, J. (2000) Nucleic Acids Res. 28, 141-145.
8. Sohocki, M. M., Malone, K. A., Sullivan, L. S. & Daiger, S. P. (1999) Genomics 58, 29-33.
9. Malone, K., Sohocki, M. M., Sullivan, L. S. & Daiger, S. P. (1999) Mol. Vis. 5, 5.
10. Mu, X., Zhao, S., Pershad, R., Hsieh, T. F., Scarpa, A., Wang, S. W., White, R. A., Beremand, P. D., Thomas, T. L., Gan, L. & Klein, W. H. (2001) Nucleic Acids Res. 29, 4983-4993.
11. Sinha, S., Sharma, A., Agarwal, N., Swaroop, A. & Yang-Feng, T. L. (2000) Invest. Ophthalmol. Vis. Sci. 41, 24-28.
12. Sharon, D., Blackshaw, S., Cepko, C. L. & Dryja, T. P. (2002) Proc. Natl. Acad. Sci. USA 99, 315-320.
13. Velculescu, V. E., Vogelstein, B. & Kinzler, K. W. (2000) Trends Genet. 16, 423-425.
14. Blackshaw, S., Fraiolli, R. E., Furukawa, T. & Cepko, C. L. (2002) Cell 107, 579-589.
15. Sullivan, L. S., Heckenlively, J. R., Browne, S. J., Zuo, J., Hide, W. A., Gal, A., Denton, M., Ingleheam, C. F., Blanton, S. H. & Daiger, S. P. (1999) Nat. Genet. 22, 255-259.
16. Sohocki, M. M., Bowne, S. J., Sullivan, L. S., Blackshaw, S., Cepko, C. L., Payne, A. M., Bhattacharya, S. S., Khaliq, S., Qasim Mehdi, S., Birch, D. G., et al. (2000) Nat. Genet. 24, 79-83.
17. den Hollander, A. I., ten Brink, J. B., de Kok, Y. J. M., van Soest, S., van den Bom, L. I., van Driel, M. A., van de Pol, D. J. R., Payne, A. M., Bhattacharya, S., Kellner, U., et al. (1999) Nat. Genet. 23, 17-22.
18. den Hollander, A. I., Heckenlively, J. R., van den Bom, L. I., de Kok, Y. J. M., van der Velde-Vissner, S. D., Kellner, U., Jurklies, M. J., van Schooneveld, M. J., Blankenagel, A., Rohrschneider, K., et al. (2001) Am. J. Hum. Genet. 69, 198-203.
19. Katsanis, N., Worley, K. C. & Lupski, J. R. (2001) Nat. Genet. 29, 88-91.
20. Bailey, J. A., Yavor, A. M., Massa, H. F., Trask, B. J. & Eichler, E. E. (2001) Genome Res. 11, 1005-1017.
21. Semple, C. A. M., Morris, S. W., Porteus, D. J. & Evans, K. L. (2002) Genome Res. 12, 424-429.
22. Kent, W. J. (2002) Genome Res. 12, 656-664.
23. Lolley, R. N., Craft, C. M. & Lee, R. H. (1992) Neurochem. Res. 17, 81-89.
24. Freund, C., Gregory-Evans, C., Furukawa, T., Papaioarmou, M., Looser, J., Ploder, L., Bellingham, J., Ng, D., Herbrick, J., Duncan, A., et al. (1997) Cell 91, 543-553.
25. Strausberg, R. L. (2001) J. Pathol. 195, 31-40.
26. Allikmets, R., Singh, N., Sun, H., Shroyer, N. F., Hutchinson, A., Chidambaram, A., Gerrard, B., Baird, L., Stauffer, D., Peiffer, A., et al. (1997) Nat. Genet. 15, 236-246.
27. Stohr, H. & Weber, B. H. F. (2001) Genomics 74, 377-384.
28. Barbieri, A. M., Lupo, G., Bulfone, A., Andreazzoli, M., Mariani, M., Fougerousse, F., Consalez, G. G., Borsani, G., Beckmann, J. S., Barsacchi, G., et al. (1999) Proc. Natl. Acad. Sci. USA 96, 10729-10734.
29. Claverie, J.-M. (2000) Genome Res. 10, 1277-1279.
30. Huttenhofer, A., Kiefmann, M., Meier-Ewert, S., O'Brien, J., Lehrach, H., Bachellerie, J. P. & Brosius, J. (2001) EMBO J. 20, 2943-2953.