A new potato virus in a new lineage of picorna-like viruses

Archives of Virology

Volumn 149, Issue 11, 2004, Pages 2141-2154

  Thompson, J R ^a   Perry, K L ^a   De Jong, W ^a  

^a Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

5' UNTRANSLATED REGION; AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CLASSIFICATION; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PICORNAVIRUS; POTATO; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIROLOGY;

5' UNTRANSLATED REGIONS; AMINO ACID SEQUENCE; MOLECULAR SEQUENCE DATA; PICORNAVIRIDAE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SOLANUM TUBEROSUM;

ANIMALIA; APPLE LATENT SPHERICAL VIRUS; CHERRY RASP LEAF VIRUS; CITRUS SINENSIS; COMOVIRIDAE; FRAGARIA X ANANASSA; MALUS X DOMESTICA; MENTHA X PIPERITA; NAVEL ORANGE INFECTIOUS MOTTLING VIRUS; SATSUMA DWARF VIRUS; SEQUIVIRIDAE; SOLANUM TUBEROSUM; STRAWBERRY MOTTLE VIRUS; UMBILICUS; UNCLASSIFIED VIRUSES;

EID: 8744266449     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-004-0362-3     Document Type: Article

References (39)

1. Brown DJF, Halbrendt JM, Robbins RT, Vrain TC (1993) Transmission of nepoviruses by Xiphinema americanum-group nematodes. J Nematol 25: 349-354
2. Brown DJF, Halbrendt JM, Jones AT, Vrain TC, Robbins RT (1994) Transmission of three North American nepoviruses by populations of four distinct species of the Xiphinema americanum group. Phytopathology 84: 646-649
3. Culley AI, Lang AS, Suttle CA (2003) High diversity of unknown picorna-like viruses in the sea. Nature 424: 1054-1057
4. De Jong WS, De Jong DM, De Jong H, Kalazich J, Bodis M (2003) An allele of dihydroflavonol 4-reductase associated with the ability to produce red anthocyanin pigments in potato (Solanum tuberosum L.). Theor Appl Genet 107: 1375-1383
5. FAO (2002) Food and Agriculture Organization of the United Nations Statistical Database
6. Goldbach RW (1986) Molecular evolution of plant RNA viruses. Ann Rev Phytopathol 24: 289-310
7. Goldbach RW, Wellink J (1996) Comoviruses: Molecular biology and replication. In: Harrison BD, Murant AF (eds), Polyhedral virions and bipartite RNA genomes. The plant viruses vol 5. pp 35-76, Plenum Press, New York
8. Gorbalenya AE, Donchenko AP, Blinov VM, Koonin EV (1989) Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serine proteases. A distinct protein superfamily with a common structural fold. FEBS Lett 243: 103-114
9. Gorbalenya AE, Koonin EV, Wolf YI (1990) A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses. FEBS Lett 262: 145-148
10. Hansen AJ, Nyland G, McElroy FD, Stace-Smith R (1974) Origin, cause, host range and spread of Cherry rasp leaf disease in North America. Phytopathology 64: 721-727
11. Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42: 182-192
12. Iwanami T, Kondo Y, Kobayashi M, Han SS, Karasev AV (2001) Sequence diversity and interrelationships among isolates of satsuma dwarf-related viruses. Arch Virol 146: 807-813
13. James D, Howell WE, Mink GI (2001) Molecular evidence of the relationship between a virus associated with Flat apple disease and Cherry rasp leaf virus as determined by RT-PCR. Plant Dis 85: 47-52
14. James D, Upton C (2002) Nucleotide sequence analysis of RNA-2 of a flat apple isolate of Cherry rasp leaf virus with regions showing greater identity to animal picornaviruses than to related plant viruses. Arch Virol 147: 1631-1641
15. Jones AT, Mayo MA, Henderson SJ (1985) Biological and biochemical properties of an isolate of cherry rasp leaf virus from red raspberry. Ann Appl Biol 106: 101-110
16. Karasev AV, Han SS, Iwanami T (2001) Satsuma dwarf and related viruses belong to a new lineage of plant picorna-like viruses. Virus Genes 23: 45-52
17. Koonin EV (1991) The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J Gen Virol 72(Pt 9): 2197-2206
18. Kozak M (2002) Pushing the limits of the scanning mechanism for initiation of translation. Gene 299: 1-34
19. Lamberti F, Ciancio A (1993) Diversity of Xiphinema americanum-group species and hierarchical cluster analysis of morphometrics. J Nematol 25: 332-343
20. Lange BM, Wildung MR, Stauber EJ, Sanchez C, Pouchnik D, Croteau R (2000) Probing essential oil biosynthesis and secretion by functional evaluation of expressed sequence tags from mint glandular trichomes. Proc Natl Acad Sci USA 97: 2934-2939
21. Li C, Yoshikawa N, Takahashi T, Ito T, Yoshida K, Koganezawa H (2000) Nucleotide sequence and genome organization of apple latent spherical virus: a new virus classified into the family Comoviridae. J Gen Virol 81: 541-547
22. Li TSC, Eastwell KC, Hansen AJ (1996) Transmission of cherry viruses by approach grafting from herbaceous to woody hosts. Can J Plant Pathol 18: 429-432
23. Lütcke HA, Chow KC, Mickel FS, Moss KA, Kern HF, Scheele GA (1987) Selection of AUG initiation codons differs in plants and animals. EMBO J 6: 43-48
24. Mason PA (2002) Plant parasitic nematodes identified from North Dakota potato fields. Phytopathology 92 (6 Suppl): S52
25. Mayo MA, Robinson DJ (1996) Nepoviruses: molecular biology and replication. In: Harrison BD, Murant AF (eds), Polyhedral virions and bipartite RNA genomes. The plant viruses vol 5. pp 139-185, Plenum Press, New York
26. Nyland G, Lownsbery BF, Lowe SK, Mitchel JF (1969) The transmission of Cherry rasp leaf virus by Xiphinema americanum. Phytopathology 59: 1111-1112
27. Parish CL (1977) A relationship between flat apple disease and cherry rasp leaf disease. Phytopathology 67: 982-984
28. Ritzenthaler C, Viry M, Pinck M, Margis R, Fuchs M, Pinck L (1991) Complete nucleotide sequence and genetic organization of grapevine fanleaf nepovirus RNA1. J Gen Virol 72(Pt 10): 2357-2365
29. Robbins RT (1993) Distribution of Xiphinema americanum and related species in North America. J Nematol 25: 344-348
30. Roossinck MJ (1997) Mechanisms of plant virus evolution. Annu Rev Phytopathol 35: 191-209
31. Rott ME, Gilchrist A, Lee L, Rochon D (1995) Nucleotide sequence of tomato ringspot virus RNA1. J Gen Virol 76(Pt 2): 465-473
32. Slack SA, German TL (2001) Origin, history, and importance of the potato. In: Stevenson WR, Loria R, Franc GD, Weingartner DP (eds), Compendium of potato diseases. The American Phytopathological Society, St. Paul, MN, pp 57-73
33. Stanway G (1990) Structure, function and evolution of picornaviruses. J Gen Virol 71(Pt 11): 2483-2501
34. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882
35. Thompson JR, Leone G, Lindner JL, Jelkmann W, Schoen CD (2002) Characterization and complete nucleotide sequence of Strawberry mottle virus: a tentative member of a new family of bipartite plant picorna-like viruses. J Gen Virol 83: 229-239
36. Thurston HD (2001) Origin, history, and importance of the potato. In: Stevenson WR, Loria R, Franc GD, Weingartner DP (eds), Compendium of potato diseases. The American Phytopathological Society, St. Paul, MN, pp 1-2
37. van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (2000) Virus taxonomy, Seventh report of the ICTV. Academic Press, San Diego
38. Wang S, Gergerich RC, Wickizer SL, Kim KS (2002) Localization of transmissible and nontransmissible viruses in the vector nematode Xiphinema americanum. Phytopathology 92: 646-653
39. Wellink J (1998) Comovirus isolation and RNA extraction. In: Foster GD, Taylor SC (eds), Plant virology protocols. Humana Press Inc., Totowa, NJ, pp 205-209