Nucleotide sequence and genome organization of Apple latent spherical virus: A new virus classified into the family Comoviridae

Journal of General Virology

Volumn 81, Issue 2, 2000, Pages 541-547

  Li, Chunjiang ^a   Yoshikawa, Nobu ^a   Takahashi, Tsuyoshi ^a   Ito, Tsutae ^b   Yoshida, Kouji ^b   Koganezawa, Hiroki ^c  

^a IWATE UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF FRUIT TREE SCIENCE   (Japan)

^c NATIONAL AGRICULTURAL RESEARCH CENTER FOR WESTERN REGION   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; CYSTEINE PROTEINASE; HELICASE; RNA POLYMERASE; VIRUS ENZYME; VIRUS PROTEIN; VIRUS RNA;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; DENSITY GRADIENT CENTRIFUGATION; MOLECULAR WEIGHT; MOSAIC VIRUS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLANT VIRUS; PRIORITY JOURNAL; RNA SEQUENCE; VIRUS CLASSIFICATION; VIRUS GENOME; VIRUS ISOLATION; VIRUS PARTICLE;

APPLE LATENT SPHERICAL VIRUS; CHENOPODIUM QUINOA; COMOVIRIDAE; FABAVIRUS; MALUS X DOMESTICA; MIRIDAE; RNA VIRUSES;

EID: 0033972929     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-81-2-541     Document Type: Article

References (40)

1. Bacher, J. W., Warkentin, D., Ramsdell, D. & Hancock, J. F. (1994). Sequence analysis of the 3′ termini of RNA1 and RNA2 of blueberry leaf mottle virus. Virus Research 33, 145-156.
2. Brooks, M. & Bruening, G. (1995). A subgenomic RNA associated with cherry leafroll virus infections. Virology 211, 33-41.
3. Chen, X. & Bruening, G. (1992a). Nucleotide sequence and genetic map of cowpea severe mosaic virus RNA2 and comparisons with RNA2 of other comoviruses. Virology 187, 682-692.
4. Chen, X. & Bruening, G. (1992b). Cloned DNA copies of cowpea severe mosaic genomic RNAs: infectious transcripts and complete nucleotide sequence of RNA1. Virology 191, 607-618.
5. De Sequeira, O. A. & Lister, R. M. (1969). Purification and relationships of some filamentous viruses from apple. Phytopathology 59, 1740-1749.
6. Dessens, J. T. & Lomonossoff, G. P. (1991). Mutational analysis of the putative catalytic triad of the cowpea mosaic virus 24K protease. Virology 184, 738-746.
7. Fuchs, M., Pinck, M., Serghini, M. A., Ravelonandro, M., Walter, B. & Pinck, L. (1989). The nucleotide sequence of satellite RNA in grapevine fanleaf virus, strain F13. Journal of General Virology 70, 955-962.
8. Gallitelli, D., Martelli, G. P. & Rana, G. L. (1984). Artichoke vein banding virus. CMI/AAB Descriptions of Plant Viruses, no. 285.
9. Gorbalenya, A. E., Donchenko, A. P., Blinov, V. M. & Koonin, E. V. (1989). Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serine proteases. FEBS Letters 243, 103-114.
10. Gorbalenya, A. E., Koonin, E. V. & Wolf, Y. I. (1990). A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses. FEBS Letters 262, 145-148.
11. Greif, C., Hemmer, O. & Fritsch, C. (1988). Nucleotide sequence of tomato black ring virus RNA-1. Journal of General Virology 69, 1517-1529.
12. Gubler, U. & Hoffman, B. J. (1983). A simple and very efficient method for generating cDNA libraries. Gene 25, 263-269.
13. Hellen, C. U. T., Krausslich, H. G. & Wimmer, E. (1989). Proteolytic processing of polyproteins in the replication of RNA viruses. Biochemistry 28, 9881-9890.
14. Ito, T. & Yoshida, K. (1997). The etiology of apple russet ring disease. Annals of the Phytopathological Society of Japan 63, 487 (Abstract).
15. Ito, T., Koganezawa, H. & Yoshida, K. (1992). Back-transmission of apple russet ring A virus, an isometric virus isolated from an apple tree with fruit russet ring and leaf pucker symptoms, to apple seedlings. Annals of the Phytopathological Society of Japan 58, 617 (Abstract).
16. Iwanami, T., Kondo, Y. & Karasev, A. (1999). Nucleotide sequence and taxonomy of satsuma dwarf virus. Journal of General Virology 80, 793-797.
17. Jones, A. T., Mayo, M. A. & Henderson, S. J. (1985). Biological and biochemical properties of an isolate of cherry rasp leaf virus from red raspberry. Annals of Applied Biology 106, 101-110.
18. Koganezawa, H., Yanase, H., Ochiai, M. & Sakuma, T. (1985). An isometric viruslike particle isolated from russet ring-diseased apple. Annals of the Phytopathological Society of Japan 51, 363 (Abstract).
19. Koonin, E. V. & Dolja, V. V. (1993). Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Critical Reviews in Biochemistry and Molecular Biology 28, 375-430.
20. Koonin, E. V., Mushegian, A. R., Ryabov, E. V. & Dolja, V. V. (1991). Diverse groups of plant RNA and DNA viruses share related movement proteins that may possess chaperone-like activity. Journal of General Virology 72, 2895-2903.
21. Laemmli, U.K. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
22. Le Gall, O., Candresse, T., Brault, V. & Dunez, J. (1989). Nucleotide sequence of Hungarian grapevine chrome mosaic nepovirus RNA1. Nucleic Acids Research 17, 7795-7807.
23. Lütcke, H. A., Chow, K. C., Mickel, F. S., Moss, K. A., Kern, H. F. & Scheele, G. A. (1987). Selection of AUG initiation codons differs in plants and animals. EMBO Journal 6, 43-48.
24. Margis, R. & Pinck, L. (1992). Effects of site-directed mutagenesis on the presumed catalytic triad and substrate-binding pocket of grapevine fanleaf nepovirus 24-kDa proteinase. Virology 190, 884-888.
25. Mayo, M. A. & Fritsch, C. (1994). A possible consensus sequence for VPg of viruses in the family Comoviridae. FEBS Letters 354, 129-130.
26. Murphy, F. A., Fauquet, C. M., Bishop, D. H. L., Ghabrial, S. A., Jarvis, A. W., Martelli, G. P., Mayo, M. A. & Summers, M. D. (editors) (1995). Virus Taxonomy. Sixth Report of the International Committee on Taxonomy of Viruses. Vienna & New York: Springer-Verlag.
27. Mushegian, A. R. (1994). The putative movement domain encoded by nepovirus RNA-2 is conserved in all sequenced nepoviruses. Archives of Virology 135, 437-441.
28. Nakamura, S., Honkura, R., Iwai, T., Ugaki, M. & Ohashi, T. (1996). The complete nucleotide sequence of bean yellow mosaic virus genomic RNA. Annals of the Phytopathological Society of Japan 62, 472-477.
29. Németh, M. (1986). Virus, Mycoplasma and Rickettsia Diseases of Fruit Trees. Budapest: Académia Kiadó.
30. Ritzenthaler, C., Viry, M., Pinck, M., Margis, R., Fuchs M. & Pinck, L. (1991). Complete nucleotide sequence and genetic organization of grapevine fanleaf nepovirus RNA1. Journal of General Virology 72, 2357-2365.
31. Rott, M. E., Tremaine, J. H. & Rochon, D. M. (1991a). Nucleotide sequence of tomato ringspot virus RNA-2. Journal of General Virology 72, 1505-1514.
32. Rott, M. E., Tremaine, J. H. & Rochon, D. M. (1991b). Comparison of the 5′ and 3′ termini of tomato ringspot virus RNA1 and RNA2: evidence for RNA recombination. Virology 185, 468-472.
33. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406-425.
34. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
35. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain terminating inhibitors. Proceedings of the National Academy of Sciences, USA 74, 5463-5467.
36. Serghini, M. A., Fuchs, M., Pinck, M., Reinbolt, J., Walter, B. & Pinck, L. (1990). RNA2 of grapevine fanleaf virus: sequence analysis and coat protein cistron location. Journal of General Virology 71, 1433-1441.
37. Stace-Smith, R. & Hansen, A. J. (1976). Cherry rasp leaf virus. CMI/AAB Descriptions of Plant Viruses, no. 159.
38. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
39. Wellink, J. & van Kammen, A. (1988). Proteases involved in the processing of viral polyproteins. Archives of Virology 98, 1-26.
40. Yoshikawa, N., Sasaki, E., Kato, M. & Takahashi, T. (1992). The nucleotide sequence of apple stem grooving capillovirus genome. Virology 191, 98-105.