Phylogenetic analysis of plastid trnL-trnF sequences from Arisaema species (Araceae) in Korea

Euphytica

Volumn 138, Issue 1, 2004, Pages 81-88

  Jung, Yong Hwan ^a   Song, Eun Young ^a   Chun, Seung Jong ^a   Jang, Ki Chang ^a   Kim, Misun ^a   Kang, Sang Heon ^a   Kim, Seong Cheol ^a  

^a National Institute of Animal Science   (South Korea)

Author keywords

Arisaema; chloroplast DNA; duplication motif; length mutation; maximum parsimony; trnL trnF

Indexed keywords

ARACEAE; ARISAEMA; ARISAEMA AMURENSE F. SERRATUM; ARISAEMA CANDIDISSIMUM; ARISAEMA HETEROPHYLLUM; ARISAEMA RINGENS F. PRAECOX; ARISAEMA ROBUSTUM F. PURPUREUM; ARISAEMA SERRATUM; ARISAEMA SIKOKIANUM; ARISAEMA THUNBERGII; INSERTION SEQUENCES; PINELLIA;

EID: 8544220442     PISSN: 00142336     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:EUPH.0000047078.20546.b6     Document Type: Article

References (40)

1. Aldrich, J., B.W. Cherney, E. Merlin & L. Christopherson, 1988. The role of insertions/deletions in the evolution of the intergenic region between psbA and trnH in the chloroplast genome. Curr Genet 14: 137-146.
2. Amane, M., N. Ouazzani, R. Lumaret & C. Debain, 2000. Chloroplast-DNA variation in the wild and cultivated olives (Olea europaea L.) of Morocco. Euphytica 116: 59-64.
3. Baker, W.J., C.B. Asmussen, S.C. Barrow, J. Dransfield & T.A. Hedderson, 1999. A phylogeny study of the palm family (Palmae) based on chloroplast DNA sequences from the trnL-trnF region. Plant Syst Evol 219: 111-126.
4. Bayer, R.J. & J.R. Starr, 1998. Tribal phylogeny of the Asteraceae based on two non-coding chloroplast sequences, the trnL intron and trnL/trnF intergenic spacer. Ann Missouri Bot Gard 85: 242-256.
5. Curtis, S.E & M.T. Clegg, 1984. Molecular evolution of chloroplast DNA sequences. Mol Biol Evol 1: 291-301.
6. Doebley, J.F., D.P. Ma & W.T. Renfroe, 1987. Insertion/deletion mutations in the Zea chloroplast genome. Curr Genet 11: 617-624.
7. Doyle, J.J & J.A. Doyle, 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 17: 144-163.
8. Engler, A., 1879. Arisaema. In: DC., Monographiae Phanerogamarum 2: 533-560.
9. Felsenstein, J., 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
10. Fitch, W.M., 1971. Toward defining the course of evolution: Minimum change for a specific tree topology. Syst Zool 20: 406-416.
11. Gielly, L. & P. Taberlet, 1994. Chloroplast DNA polymorphism at the intrageneric level: Implications for the establishment of plant phylogenies. C R Acad Sci Life Sci 317: 685-692.
12. Gimenes, M.A., C.R. Lopes, M.L. Galgaro, J.F.M. Valls & G. Kochert, 2002. RFLP analysis of genetic variation in species of section Arachis, genus Arachis (Leguminosae). Euphytica 123: 421-429.
13. Herselman, L., 2003. Genetic variation among Southern African cultivated peanut (Arachis hypogaea L.) genotypes as revealed by AFLP analysis. Euphytica 133: 319-327.
14. Hota, M., 1971. Study of the family Araceae. General remarks. Jap J Bot 20: 269-310.
15. Jung, Y.H., K.H. Kim, S.H. Kang, S.J Jun, M.Y. Oh & S.C. Kim, 2003a. Phylogenetic analysis of the genus Actinidia in Korea inferred from two non-coding chloroplast DNA sequences. Korean J Genetics 25: 95-101.
16. Jung, Y.H., S.C. Kim, M. Kim, K.H. Kim, H.M. Kwon & M.Y. Oh, 2003b. Chloroplast inheritance patterns in Actinidia hybrids determined by single stranded conformation polymorphism analysis. Mol Cells 15: 277-282.
17. Jung, Y.H., S.H. Han & M.Y. Oh, 2002. Phylogenetic analysis of Korean Prunus (Rosaceae) based on ITS sequences of nuclear ribosomal DNA. Korean J Genet 24: 247-258.
18. Kimura, M., 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
19. Ko, S.C. & Y.S. Kim, 1985. A taxonomic study on genus Arisaema in Korea. Kor J Plant Tax 15: 67-109.
20. Ko, S.C., B.U. Oh, H.S. Lee & Y.S. Kim, 1990. A phylogenetic study of Arisaema by anatomical and palynological characters I. - Anatomical characters. Kor J Plant Tax 20: 9-35.
21. Ko, S.C., K.H. Tae, T.O. Kwon & Y.S. Kim, 1987. A cytotaxonomic study on some species of Arisaema. Kor J Plant Tax 17: 189-205.
22. Lakshmi, M., P. Senthilkumar, M. Parani, M.N. Jithesh & A.K. Parida, 2000. PCR-RFLP analysis of chloroplast gene regions in Cajanus (Leguminosae) and allied genera. Euphytica 116: 243-250.
23. Lee, T.B., 1980. Illustrated Flora of Korea. Hyangmunsa, Seoul.
24. Li, H., 1980. Himalayas-Hengduan Mountains-the centre of distribution and differentiation of the genus Ansaema. Acta Bot Yunnan 2: 402-416.
25. Maekawa, F., 1944. Dennansho Zoku Wa Honrai Niyo no monode aru. J Jap Bot 20: 191.
26. Martius, K.F.P. von., 1831. Arisaema. Flora 4: 458-459.
27. Mes, T.H.M., J. Van Brederode & H.T. Hart, 1996. Origin of the woody Macaronesian Sempervivoideae and the phylogenetic position of the East African species of Aeonium. Botanica Acta 109: 477-491.
28. Murata, J., 1990a. Present status of Arisaema systematics. Bot Mag Tokyo 103: 371-382.
29. Murata, J., 1990b. Developmental patterns of pedate leaves in tribe Areae (Araceae-Aroideae) and their systematic implication. Bot Mag Tokyo 103: 339-343.
30. Nakai, T., 1950. Classes, Ordines, Familiae, Subfamiliae, Tribus, Genera nova quae attinent ad Plantas Koreanas (Supplementum). J Jap Bot 25: 5-7.
31. Oh, B.U., S.C. Ko, W.P. Hong & Y.S. Kim, 1990. A phylogenetic study of Arisaema by anatomical and palynological characters II. - Palynological characters. Kor J Plant Tax 20: 37-52.
32. Ohashi, H. & J. Murata, 1980. Taxonomy of the Japanese Arisaema. J Fac Sci Univ Tokyo III 12: 281-336.
33. Palmer, J.D., B. Osorio, J. Aldrich & W.F. Thompson, 1987. Chloroplast DNA evolution among legumes: Lose of a large inverted repeat occurred prior to other sequence rearrangements. Curr Genet 11: 275-286.
34. Sang, T., D.J. Crawford & T.F. Stuessy, 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). Amer J Bot 84: 1120-1136.
35. Serizawa, S., 1981. Studies on the genus Arisaema in Japan (4), Arisaema amurense group and A. longipedunculatum group. Phytotax Geobot 32: 22-30.
36. Soltis, D.E., P.S. Soltis & B.G. Milligan, 1992. Intraspecific chloroplast DNA variation: Systematic and phylogenetic implications. In: P.E. Soltis, D.E. Soltis & J.J. Doyle (Eds.), Molecular Systematics of Plants, pp. 117-150. Chapman and Hall, New York.
37. Swofford, D.L., 1999. PAUP 4.0b phylogenetic analysis using parsimony (and other methods). Sinauer, Sunderland, Mass.
38. Thompson, J.D., T.J. Gibson & F. Plewniak, 1997. The Clustal-X Windows Interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
39. Watanabe, K., T. Kobayashi & J. Murata, 1998. Cytology and systematics in Japanese Arisaema (Araceae). J Plant Res 111: 509-521.
40. His and the ribosomal proteins S19 and L2. Nucleic Acids Res 12: 6547-6558.