Phylogenetic analysis of Korean Prunus (Rosaceae) based on ITS sequences of nuclear ribosomal DNA

Korean Journal of Genetics

Volumn 24, Issue 3, 2002, Pages 247-258

  Jung, Yong Hwan ^a   Han, Sang Hyun ^a   Oh, Moon You ^a  

^a Jeju National University   (South Korea)

Author keywords

Divergence; ITS; Monophyletic; P. yedoensis; Phylogenetic; Prunus; RAPD

Indexed keywords

CELL NUCLEUS DNA; INTERNAL TRANSCRIBED SPACER 1; INTERNAL TRANSCRIBED SPACER 2; RIBOSOME DNA;

ARTICLE; BASE PAIRING; CULTIVAR; GENETIC VARIABILITY; KOREA; MONOPHYLY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRUNUS; RANDOM AMPLIFIED POLYMORPHIC DNA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SPECIES; SPECIES DIFFERENTIATION; TAXONOMY; WILDLIFE;

PRUNOPHORA; PRUNUS; PRUNUS LEVEILLEANA; ROSACEAE;

EID: 0036387412     PISSN: 02545934     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (35)

1. Badenes ML and Parfitt DE (1995) Phylogenetic relationships of cultivated Prunus species from an analysis of chloroplast DNA variation. Theor. Appl. Genet. 90: 1035-1041.
2. Bailey LH and Bailey EZ (1976) Prunus L.: A Concise Dictionary of Plants Cultivated in the United States and Canada. Macmillan Publishing Company, New York, 921 pp.
3. Baldwin BG (1992) Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: An example from the Compositae. Mol. Phyl. Evol. 1: 3-16.
4. Baldwin BG (1993) Molecular phylogenetics of Calycadenia (Compositae) based on ITS sequences of nuclear ribosomal DNA: chromosomal and morphological evolution reexamined. Amer. J. Bot. 210: 1-17.
5. Baldwin BG, Sanderson MJ, Porter JM, Wojcichowski MF, Campbell CS and Donoghue MJ (1995) The ITS region of nuclear ribosomal DNA: A valuable source of evidence of angiosperm phylogeny. Ann. Missouri. Bot. Gard. 82: 247-277.
6. Downie SR and Katz-Downie DS (1996) A molecular phylogeny of Apiaceae subfamily Apioideae: Evidence from nuclear ribosomal DNA internal transcribed spacer sequences. Amer. J. Bot. 83: 234-251.
7. Doyle JJ and Doyle JA (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 17: 144-163.
8. Felsenstein J (1993) PHYLIP (Phylogeny Inference Package) ver. 3.572. Computer program distributed by the author. Dept. of Genetics, The University of Washington, Seattle, WA.
9. Han SH, Jung YH, Ko MH, Oh YS, Koh SC, Kim MH and Oh MY (2000) Phylogenetic relationship between Dendropanax morbifera Leveille and D. trifidus Makino (Araliaceae) based on nuclear ribosomal DNA internal transcribed spacer (ITS) sequences. Korean J. Genetics 22: 257-264.
10. Higgins DG, Bleasby AJ and Fuchs R (1992) Clustal V: Improved softword for multiful sequence alignment. Computer Applic. Biosci. 8: 189-191.
11. Jobst J, King K and Hemleben V (1998) Molecular evolution of the internal transcribed spacers (ITS1 and ITS2) and phylogenetic relationships among species of the family Cucurbitaceae. Mol. Phyl. Evol. 9: 204-219.
12. Jung YH, Han SH, Oh YS, Ko MH, Koh SC, Kim MH and Oh MY (2000) Genetic variation and phylogenetic analysis of genus Abies distributed in Korea based on RAPD and nuclear rDNA ITS2 sequences. Korean J. Genetics 22: 341-354.
13. Jung YH, Ko MH, Oh YS, Kim GO, Kim MH and Oh MY (1997) Phylogenetic relationship among selected taxa of Prunus in Mt. Halla and cultivated Prunus yedoensis by the RAPD analysis. Kor. J. Plant Tax. 27: 415-428.
14. Kaneko T, Terachi T and Tsunewaki K (1986) Studies on the origin of crop species by restriction endonuclease analysis of organellar DNA. II. Restriction analysis of ctDNA of 11 Prunus species. Jpn. J. Genet. 61: 157-168.
15. Kim KJ and Jansen RK (1994) Comparisons of phylogenetic hypotheses among different data sets in dwarf dandelions (Krigia, Asteraceae): additional information from internal transcribed spacer sequences of nuclear ribosomal DNA. Pl. Syst. Evol. 190: 157-185.
16. Kim CS, Lee KY, Moon MO, Hyun HJ, Ihm BS and Kim MH (1998) Natural habitat of Prunus yedoensis Matsumura and its morphological variations. Kor. J. Plant. Tax. 28: 117-137.
17. Kim WG, Kim BC and Kim MH (1990) A systematic study on genus Prunus in Korea. Kor. J. Plant Tax. 20: 65-79.
18. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparable studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
19. Kiss T, Kis M, Abel S and Solymosy F (1988) Nucleotide sequence of the 17S-25S spacer from tomato rDNA. Nucleic Acids Res. 16: 71-79.
20. Kitamura S and Murata G (1979) Coloured illustrations of wood plants of Japan vol. II″, Hoikusha publishing Co. Ltd, Tokyo, 217 pp.
21. Koidzumi G (1932) Prunus yedoensis Matsum. is a native of Quelpaert. Acta. Phytotax. et Geobot. 1: 177-179.
22. Lersten NR and Horner HT (2000) Calcium oxalate crystal types and trends in their distribution patterns in leaves of Prunus (Rosaceae: Prunoideae). Plant Syst. Evol. 224: 83-96.
23. Park SH, Kim MH and Lee ST (1984) A palynological study on the several cherry trees in Mt. Halla. Kor. J. Plant. Tax. 14: 153-158.
24. Rehder A (1940) Manual of cultivated trees and shrubs, 2nd Eds, McMillan Press, New York, 481 pp.
25. Sambrook J, Fritsch EF and Maniatis T (1989) Molecular cloning: A Laboratory Manual. 2nd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp 9.16-9.23.
26. Schiebel K and Hemleben V (1989) Nucleotide sequence of the 18S-25S spacer region from rDNA of mung bean. Nucleic Acids Res. 17: 2852.
27. Suh YB, Cho HJ, Kim ST and Park CW (1996) Comparative analysis of ITS sequences from Acer species (Aceraceae) in Korea. J Plant Biol 39: 1-8.
28. Swofford DL (1993) PAUP (Phylogenetic analysis using parsimony) ver. 3.1.1. Illinois Natural History Survey, Champaign, IL, USA.
29. Takaiwa F, Oono K and Sugiura M (1985) Nucleotide sequence of the 17S-25S spacer region from mice rDNA. Pl. Mol. Biol. 4: 355-364.
30. Takenaka Y (1963) The origin of the Yoshino cherry tree. J. Hered. 54: 207.
31. Torres RA, Ganal M and Hemleben V (1990) GC balance in the internal transcribed spacers ITS1 and ITS2 nuclear ribosomal DNA. J. Mol. Evol. 30: 170-181.
32. Venkateswarlu K and Nazar R (1991) A conserved core structure in the 18S-25S rRNA intergenic region from tobacco, Nicotiana rustica. Pl. Mol. Biol. 17: 189-194.
33. Watkins R (1976) Cherry, plum, peach, apricot and almond. In Simmonds NW (ed) Evolution of crop plants, Longman, London, pp. 242-247.
34. White TJ, Bruns T, Lee S and Taylor J (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Aplications (M. Innis, S. Gelfand, J. Sninsky and T. White, Eds.), Academic Press, San Diego, pp. 315-322.
35. Yokota Y, Kawata T, Iida Y, Kata A and Tanifuji S (1989) Nucleotide sequences of the 5.8S rRNA gene and internal transcribed spacer regions in carot and broad bean ribosomal DNA. J. Mol. Evol. 29: 294-301.