A phylogenetic study of the palm family (Palmae) based on chloroplast DNA sequences from the trnL - trnF region

Plant Systematics and Evolution

Volumn 219, Issue 1-2, 1999, Pages 111-126

  Baker, William J ^a,b   Asmussen, Conny B ^c   Barrow, Sasha C ^b   Dransfield, John ^b   Hedderson, Terry A ^a  

^a UNIVERSITY OF READING   (United Kingdom)

^b ROYAL BOTANIC GARDENS   (United Kingdom)

^c UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

Arecaceae; Chloroplast DNA; Molecular phylogenetics; Palm family; Palmae; Parsimony analysis; Systematics; TrnL (UAA) trnF (GAA)

Indexed keywords

ARECACEAE; EMBRYOPHYTA;

EID: 0033387676     PISSN: 03782697     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF01090303     Document Type: Article

References (40)

1. Asmussen C. B., Doyle J. J. (1997) The rpl16 intron as potential genetic marker within the palm family (Arecaceae). Amer. J. Bot. Abstracts 84: 174.
2. Baker W. J. (1997) Systematic studies of the calamoid palms. PhD Thesis, University of Reading.
3. Baker W. J., Asmussen C. B., Barrow S., Dransfield J., Hedderson T. A. (1997) A molecular phylogeny for the palm family (Arecaceae) based on chloroplast DNA sequence data. Amer. J. Bot. Abstracts 84: 176.
4. Baker W. J., Dransfield J., Harley M. M., Bruneau A. (1999) Morphology and cladistic analysis of subfamily Calamoideae (Palmae). In: Henderson A., Borchsenius F. (eds.) Evolution, variation and classification of palms. Mem. New York Bot. Gard. 83: 307-323.
5. Barrow S. (1996) A Monograph of Phoenix L. (Palmae: Coryphoideae). PhD Thesis, University of Reading.
6. Böhle U.-R., Hilger H., Cerff R., Martin W. F. (1994) Non-coding chloroplast DNA for plant molecular systematics at the infrageneric level. In: Schierwater B., Streit B., Wagner G. P., DeSalle R. (eds.) Molecular ecology and evolution: approaches and applications. Birkhäuser, Basel, pp. 391-403.
7. Chase M. W., Duvall M. R., Hills H. G., Conran J. G., Cox A. V., Eguiarte L. E., Hartwell J., Fay M. F., Caddick L. R., Cameron K. M., Hoot S. (1995a) Molecular phylogenetics of the Lilianae. In: Rudall P. J., Cribb P. J., Cutler D. F., Humphries C. J. (eds.) Monocotyledons: systematics and evolution. Royal Botanic Gardens, Kew, pp. 109-138.
8. Chase M. W., Soltis D. E., Olmstead R. G., Morgan D., Les D. H., Mishler B. D., Duvall M. R., Price R. A., Hills H. G., Qiu Y.-L., Kron K. A., Rettig J. H., Conti E., Palmer J. D., Manhart J. R., Sytsma K. J., Michaels H. J., Kress W. J., Karol K. G., Clark W. D., Hedrén M., Gaut B. S., Jansen R. K., Kim K.-J., Wimpee C. F., Smith J. F., Furnier G. R., Strauss S. H., Xiang Q.-Y., Plunkett G. M., Soltis P. S., Swensen S. M., Williams S. E., Gadek P. A., Quinn C. J., Eguiarte L. E., Golenberg E., Learn G. H. Jr., Graham S. W., Barrett S. C. H., Dayanandan S., Albert V. A. (1993) Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Ann. Missouri Bot. Gard. 80: 528-580.
9. Chase M. W., Stevenson D. W., Wilkin P., Rudall P. J. (1995b) Monocot systematics: a combined analysis. In: Rudall P. J., Cribb P. J., Cutler D. F., Humphries C. J. (eds.) Monocotyledons: systematics and evolution. Royal Botanic Gardens, Kew, pp. 685-730.
10. Dransfield J., Uhl N. W. (1986) An outline classification of palms. Principes 30: 3-12.
11. Doyle J. J., Doyle J. L. (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
12. Drude O. (1887) Palmae. In: Engler A., Prantl K. (eds.) Die Natürlichen Pflanzenfamilien 2(3): 1-93. Verlag von Wilhelm Engelmann, Leipzig.
13. Farris J. S. (1969) A successive approximations approach to character weighting. Syst. Zool. 18: 374-385.
14. Farris J. S. (1989) The retention index and the rescaled consistency index. Cladistics 5: 417-419.
15. Farris J. S. (1995) Parsimony Jackknifer, Version 4.22. Distributed by the author.
16. Farris J. S., Albert V. A., Källersjö M., Lipscomb D., Kluge A. G. (1996) Parsimony jackknifing outperforms neighbor-joining. Cladistics 12: 99-124.
17. Ferris C., Oliver R. P., Davy A. J., Hewitt G. M. (1993) Native oak chloroplasts reveal an ancient divide across Europe. Molec. Ecol. 2: 337-344.
18. Ferris C., Oliver R. P., Davy A. J., Hewitt G. M. (1995) Using chloroplast DNA to trace post-glacial migration routes of oaks into Britain. Molec. Ecol. 4: 731-738.
19. Ferris C., King R. A., Gray A. J. (1997) Molecular evidence for the maternal parentage in the hybrid origin of Spartina anglica C. E. Hubbard. Molec. Ecol. 6: 185-187.
20. Gaut B. S., Morton B. R., McCaig B. C., Clegg M. T. (1996) Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. Proc. Natl. Acad. U.S.A. 93: 10274-10279.
21. Gielly L., Taberlet P. (1994) The use of chloroplast DNA to resolve plant phylogenies: noncoding versus rbcL sequences. Molec. Biol. Evol. 11: 769-777.
22. Gielly L., Taberlet P. (1996) A phylogeny of the European gentians inferred from chloroplast trnL (UAA) intron sequences. Bot. J. Linn. Soc. 120: 57-75.
23. Gielly L., Yuan Y. M., Küpfer P., Taberlet P. (1996) Phylogenetic use of noncoding regions in the genus Gentiana L.: chloroplast trnL (UAA) intron versus nuclear ribosomal internal transcribed spacer sequences. Molec. Phyl. Evol. 5: 460-466.
24. Givnish T. J., Sytsma K. J. (1997) Consistency, characters, and the likelihood of correct phylogenetic inference. Molec. Phyl. Evol. 7: 320-330.
25. Goloboff P. A. (1993) Estimating character weights during tree search. Cladistics 9: 83-91.
26. Ham R. C. H. J. van, Hart H. 'T, Mes T. H. M., Sandbrink J. M., (1994) Molecular evolution of noncoding regions of the chloroplast genome in the Crassulaceae and related species. Current Genetics 25: 558-566.
27. Hillis D. M., Huelsenbeck J. P. (1992) Signal, noise, and reliability in molecular phylogenetic analyses. J. Heredity 83: 189-195.
28. Kim J. H., Hart H. 'T, Mes T. H. M. (1996) The phylogenetic position of East Asian Sedum species (Crassulaceae) based on chloroplast DNA trnL (UAA) - trnF (GAA) intergenic spacer sequence variation. Acta Bot. Neerl. 45: 309-321.
29. Kita Y., Ueda K., Kadota Y. (1995) Molecular phylogeny and evaluation of the Asian Aconitum subgenus Aconitum (Ranunculaceae). J. Pl. Res. 108: 429-442.
30. Martius C. F. P. von (1823-1850) Historia Naturalis Palmarum. T. O. Weigel, Leipzig.
31. Mes T. H. M., Hart, H. 'T (1994) Sedum surculosum and S. jaccardianum (Crassulaceae) share a unique 70 bp deletion in the chloroplast DNA trnL (UAA) - trnF (GAA) intergenic spacer. Plant Syst. Evol. 193: 213-221.
32. Mes T. H. M., van Brederode J., Hart H. 'T (1996) Origin of the woody macaronesian Sempervivoideae and the phylogenetic position of the East African species of Aeonium. Bot. Acta 109: 477-491.
33. Mes T. H. M., Wiejers G. J., Hart H. 'T (1997) Phylogenetic relationships in Monanthes (Crassulaceae) based on morphological, chloroplast and nuclear DNA variation. J. Evol. Biol. 10: 193-216.
34. Moore H. E. (1973) The major groups of palms and their distribution. Gentes Herb. 11: 27-141.
35. Schrank E. (1994) Palynology of the Yesomma formation in northern Somalia: a study of pollen, spores and associated phytoplankton from the Late Cretaceous Palmae Province. Paleontographica 231: 63-112.
36. Taberlet P., Gielly L., Pautou G., Bouvet J. (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Pl. Molec. Biol. 17: 1105-1109.
37. Uhl N. W., Dransfield J. (1987) Genera Palmarum: a classification of palms based on the work of H. E. Moore, Jr. International Palm Society and L. H. Bailey Hortorium, Lawrence, KS, pp. 1-610.
38. Uhl N. W., Dransfield J. (1999) Genera Palmarum: after ten years. In: Henderson A., Borchsenius F. (eds.) Evolution and classification of palms. Mem. New York Bot. Gard. 83: 245-253.
39. Uhl N. W., Dransfield J., Davis J. I., Luckow M. A., Hansen K. S., Doyle J. J. (1995) Phylogenetic relationships among palms: cladistic analyses of morphological and chloroplast DNA restriction site variation. In: Rudall P. J., Cribb P. J., Cutler D. F., Humphries C. J. (eds.) Monocotyledons: systematics and evolution. Royal Botanic Gardens, Kew, pp. 623-661.
40. Wilson M. A., Gaut B., Clegg M. T. (1990) Chloroplast DNA evolves slowly in the palm family (Arecaceae). Molec. Biol. Evol. 7: 303-314.