Author Correction: A new coronavirus associated with human respiratory disease in China (Nature, (2020), 579, 7798, (265-269), 10.1038/s41586-020-2008-3);A new coronavirus associated with human respiratory disease in China

Nature

Volumn 579, Issue 7798, 2020, Pages 265-269

  Wu, Fan ^a   Zhao, Su ^b   Yu, Bin ^c   Chen, Yan Mei ^a   Wang, Wen ^d   Song, Zhi Gang ^a   Hu, Yi ^b   Tao, Zhao Wu ^b   Tian, Jun Hua ^c   Pei, Yuan Yuan ^a   Yuan, Ming Li ^b   Zhang, Yu Ling ^a   Dai, Fa Hui ^a   Liu, Yi ^a   Wang, Qi Min ^a   Zheng, Jiao Jiao ^a   Xu, Lin ^a   Holmes, Edward C ^a,e   Zhang, Yong Zhen ^a,d  

^a FUDAN UNIVERSITY   (China)

^b HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^c Institute of Schistosomiasis Control   (China)

^d CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^e University of Sydney   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; ANTIVIRUS AGENT; ASPARTATE AMINOTRANSFERASE; CREATINE KINASE; GENOMIC RNA; GLUCOCORTICOID; LACTATE DEHYDROGENASE; NUCLEOTIDE; VIRUS RNA; COVID-19; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2;

DISEASE PREVALENCE; EPIDEMIOLOGY; GENOME; HOSPITAL SECTOR; INFECTIOUS DISEASE; PHYLOGENETICS; PUBLIC HEALTH; RESPIRATORY DISEASE; SEVERE ACUTE RESPIRATORY SYNDROME; UNCERTAINTY ANALYSIS; VIRUS;

ADULT; ARTERIAL GAS; ARTICLE; BETACORONAVIRUS; BRONCHOALVEOLAR LAVAGE FLUID; CASE REPORT; CHEST TIGHTNESS; CHINA; CLINICAL ARTICLE; COMPUTER ASSISTED TOMOGRAPHY; CORONAVIRIDAE; CORONAVIRUS DISEASE 2019; CORONAVIRUS INFECTION; COUGHING; DIABETES MELLITUS; DISEASE SEVERITY; DIZZINESS; FEVER; HEPATITIS; HOSPITAL ADMISSION; HUMAN; HUMAN CELL; HYPOXEMIA; MALE; METAGENOMICS; NONHUMAN; NONINVASIVE VENTILATION; NUCLEOTIDE SEQUENCE; PAIN; PHYLOGENY; PHYSICAL EXAMINATION; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RESPIRATORY FAILURE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; RNA SEQUENCING; RNA VIRUS; SARS CORONAVIRUS; SEVERE ACUTE RESPIRATORY SYNDROME; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; THORAX RADIOGRAPHY; TUBERCULOSIS; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS STRAIN; WEAKNESS; CLASSIFICATION; COMMUNICABLE DISEASE; COMPLICATION; DIAGNOSTIC IMAGING; GENETIC RECOMBINATION; GENETICS; LUNG; PATHOLOGY; VIROLOGY; VIRUS PNEUMONIA; WHOLE GENOME SEQUENCING; X-RAY COMPUTED TOMOGRAPHY;

CHINA; HUBEI; WUHAN;

ANIMALIA; CORONAVIRIDAE; CORONAVIRUS; RNA VIRUSES; ZIKA VIRUS;

ADULT; BETACORONAVIRUS; CHINA; COMMUNICABLE DISEASES, EMERGING; CORONAVIRUS INFECTIONS; GENOME, VIRAL; HUMANS; LUNG; MALE; PHYLOGENY; PNEUMONIA, VIRAL; RECOMBINATION, GENETIC; RNA, VIRAL; SEVERE ACUTE RESPIRATORY SYNDROME; TOMOGRAPHY, X-RAY COMPUTED; WHOLE GENOME SEQUENCING;

EID: 85081626097     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/s41586-020-2202-3     Document Type: Erratum

References (43)

1. Drosten, C. et al. Identification of a novel coronavirus in patients with severe acute respiratory syndrome. N. Engl. J. Med. 348, 1967–1976 (2003).
2. Wolfe, N. D., Dunavan, C. P. & Diamond, J. Origins of major human infectious diseases. Nature 447, 279–283 (2007).
3. Ventura, C. V., Maia, M., Bravo-Filho, V., Góis, A. L. & Belfort, R. Jr. Zika virus in Brazil and macular atrophy in a child with microcephaly. Lancet 387, 228 (2016).
4. Shi, M. et al. Redefining the invertebrate RNA virosphere. Nature 540, 539–543 (2016).
5. Hu, D. et al. Genomic characterization and infectivity of a novel SARS-like coronavirus in Chinese bat. Emerg. Microbes Infect. 7, 1–10 (2018).
6. Shi, M. et al. The evolutionary history of vertebrate RNA viruses. Nature 556, 197–202 (2018).
7. Yadav, P. D. et al. Nipah virus sequences from humans and bats during Nipah outbreak, Kerala, India, 2018. Emerg. Infect. Dis. 25, 1003–1006 (2019).
8. McMullan, L. K. et al. Characterisation of infectious Ebola virus from the ongoing outbreak to guide response activities in the Democratic Republic of the Congo: a phylogenetic and in vitro analysis. Lancet Infect. Dis. 19, 1023–1032 (2019).
9. Li, D., Liu, C. M., Luo, R., Sadakane, K. & Lam, T. W. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics 31, 1674–1676 (2015).
10. Wang, W. et al. Discovery, diversity and evolution of novel coronaviruses sampled from rodents in China. Virology 474, 19–27 (2015).
11. Hu, B. et al. Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus. PLoS Pathog. 13, e1006698 (2017).
12. Lin, X.-D. et al. Extensive diversity of coronaviruses in bats from China. Virology 507, 1–10 (2017).
13. Xu, L. et al. Detection and characterization of diverse alpha- and betacoronaviruses from bats in China. Virol. Sin. 31, 69–77 (2016).
14. Ren, W. et al. Difference in receptor usage between severe acute respiratory syndrome (SARS) coronavirus and SARS-like coronavirus of bat origin. J. Virol. 82, 1899–1907 (2008).
15. Li, F., Li, W., Farzan, M. & Harrison, S. C. Structure of SARS coronavirus spike receptor-binding domain complexed with receptor. Science 309, 1864–1868 (2005).
16. Hulswit, R. J. G. et al. Human coronaviruses OC43 and HKU1 bind to 9-O-acetylated sialic acids via a conserved receptor-binding site in spike protein domain A. Proc. Natl Acad. Sci. USA 116, 2681–2690 (2019).
17. Ge, X. Y. et al. Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor. Nature 503, 535–538 (2013).
18. Yang, X. L. et al. Isolation and characterization of a novel bat coronavirus closely related to the direct progenitor of severe acute respiratory syndrome coronavirus. J. Virol. 90, 3253–3256 (2016).
19. Martin, D. P. et al. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26, 2462–2463 (2010).
20. Menachery, V. D. et al. A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence. Nat. Med. 21, 1508–1513 (2015).
21. Bermingham, A. et al. Severe respiratory illness caused by a novel coronavirus, in a patient transferred to the United Kingdom from the Middle East, September 2012. Euro Surveill. 17, 20290 (2012).
22. Hamre, D. & Procknow, J. J. A new virus isolated from the human respiratory tract. Proc. Soc. Exp. Biol. Med. 121, 190–193 (1966).
23. McIntosh, K., Becker, W. B. & Chanock, R. M. Growth in suckling-mouse brain of “IBV-like” viruses from patients with upper respiratory tract disease. Proc. Natl Acad. Sci. USA 58, 2268–2273 (1967).
24. van der Hoek, L. et al. Identification of a new human coronavirus. Nat. Med. 10, 368–373 (2004).
25. Woo, P. C. et al. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J. Virol. 79, 884–895 (2005).
26. Li, W. et al. Bats are natural reservoirs of SARS-like coronaviruses. Science 310, 676–679 (2005).
27. Lau, S. K. et al. Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats. Proc. Natl Acad. Sci. USA 102, 14040–14045 (2005).
28. Wang, W. et al. Discovery of a highly divergent coronavirus in the Asian house shrew from China illuminates the origin of the Alphacoronaviruses. J. Virol. 91, e00764-17 (2017).
29. Zhou, P. et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature 10.1038/s41586-020-2012-7 (2020).
30. Gorbalenya, A. E. Severe acute respiratory syndrome-related coronavirus — the species and its viruses, a statement of the Coronavirus Study Group. Preprint at bioRxiv 10.1101/2020.02.07.93786 (2020).
31. WHO. WHO Director-General’s remarks at the media briefing on 2019-nCoV on 11 February 2020. https://www.who.int/dg/speeches/detail/who-director-general-s-remarks-at-the-media-briefing-on-2019-ncov-on-11-february-2020 (WHO, 11 February 2020).
32. Bolger, A. M., Lohse, M. & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114–2120 (2014).
33. Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-seq data without a reference genome. Nat. Biotechnol. 29, 644–652 (2011).
34. Li, B., Ruotti, V., Stewart, R. M., Thomson, J. A. & Dewey, C. N. RNA-seq gene expression estimation with read mapping uncertainty. Bioinformatics 26, 493–500 (2010).
35. Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357–359 (2012).
36. Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078–2079 (2009).
37. Katoh, K. & Standley, D. M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30, 772–780 (2013).
38. Guindon, S. et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307–321 (2010).
39. Tamura, K. et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731–2739 (2011).
40. Lole, K. S. et al. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73, 152–160 (1999).
41. Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792–1797 (2004).
42. Waterhouse, A. et al. SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic Acids Res. 46, W296–W303 (2018).
43. Hwang, W. C. et al. Structural basis of neutralization by a human anti-severe acute respiratory syndrome spike protein antibody, 80R. J. Biol. Chem. 281, 34610–34616 (2006).